Gene detail

Detailed information of amic_s0169.g80.t1 in Acropora microphthalma

Genomic Location: sc0000169_pilon:993660...1001957
NR annotation: XP_015777648.1, PREDICTED: acetyl-CoA acetyltransferase, cytosolic-like isoform X2 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0169.g80.t1

CGAGCTATAAAAATTCCGATGTTGTCATCGTAGCAGCAAAGAGAACACCGATAGGAAATCTAAATGGTTGCCTTAGTAGTCTTAAAGCACATGAACTTGGCGCTATAGTCATCCGAGATGTCCTGGCTCAAGCCCAAATTCCTCCATCTGACGTGTCCGAGGTAATCATGGGACAAGTTTTCACTGCAGCACAAGGTCAGGGTCCTGCGCGTCAGGCAGCAATGCATGCTGGTATCCCATCATCGGTTCCAGCTTACGGCATTAATATGTTGTGTGGCTCTGGTTTGAAGGCTGTGGCCTTGGGTTACCAAAGTGTTATGAGTGATACAACAGCTGTCATTGTTGCAGGTGGACAAGAAAGTATGAGTCAGGCCCCACACTGTTGTCACATGAGGTCACCTTTGAAGATGGGTGACATGAAACTTGTAGATTCTATGATGACTGATGGACTTATTGATGCCTTTCGTAATTATCACATGGGAATAACAGCTGAGAATGTTGCTAAACAATGGAAAATAAGCAGGCAAAATCAAGATGAGTTTGCTCTCTCATCACAAAATCAAGCAGAGAAGGCACAGAAAGATGGTCATTTCAATGATGAACTCATAAGTATTCCTGTAAAAATAAGGAAAGGAATGATAGATGTTAAAGAGGATGAGTTTCCGCGTCACGGGACTACCCTAGAAGGTCTAGCACGTCTAAAACCCTGCTTTGTTCAGGATGGTAGTGGGACTGTCACAGCAGGAAATGCTTCGGGAATTAACGATGGCTCAGCTGCGGTGATTCTCATGACTTATGCAGAGGCTTCGAGGAGAGGAATGACCCCCTTAGCTCGCATTGTGTCATGGGGTCAGGCTGGCGTGGACCCAGAAGTAATGGGCACAGGTCCCATACCAGCGACATGGAAAGCTCTTCAAAAGGCCAACTGGCATATCAGAGATGTTGACCTGTTCGAATTAAATGAAGCATTTGCCGCTCAATCTTGTGCTGTCGTTAAAGATCTTGGAGTTGATCCTCAAAAGGTCAACGTTAGCGGTGGTGCTATCGCTCTTGGACATCCTATTGGCGCATCCGGTTGTCGAATTCTCGTCACTTTATTACATGGCCTGAAAAGGACGCAAAGAAGACGTGGAGTCGCTGCGTTGTGTATCGGTGGCGGAATGGGAATTGCTATGTGTGTAGAAAGGTGTTAAAATGGCAAAAATGAGACGGAGCTCTTGCAGTAACGACGCCAACATCTGTAAAGACGTGACATGAACAGAGAACATAACGTCAACGGGATCCAAGTTGTACTGTGTTGGCGAAAGTGCTGCAACAACTCATTTTTAATAAGCTAAATCTAAAATAAATTCCTTACGTGCAGCGCGCCTCTTGACTCAAGAAAATTGTTTGTTGGTAGCGTCGCAGTTTACTGAAAGCTGCTGTCGTCGTTGCTAAAGCTGCTTGATGTAAAAAAAATGGGACGCATTTTTCTCGGACCATTCAAAAAGAGGAATTTTGGAATATTTAATTAATCGATAAGTAAAGTGCGCGTTTATTAAAATTGTTTTAGCGCAAAAATCACAGACGGCCTACTAAGGAACTCAAATTATTTAACAATTATTCACTGAGTGTGgaggtaaatatccaccattttcaccgataccgaggtgaataattgttttagtaaataccgcacaagttgacaaaatagcaccaaaaacaaaatagcaccaaaaattttatcgaagacaattaactgaaaaatgatcgattttcatagtttcgcgctcgattcttcggcgtgaatgtaattgtgtaatcacctcccagttaaccaatcagggagcgccaaaagcactcttcacttgagtggtctatactaaaTAAATTTAAAATATGATATTTTAATTGTGATTATAAGTTACATAACAAATAAATTTATCTCGGCTGTTTGAAGTCAAACTAAGCGTTAATCAAACGACgtttgtttgtttgttgtttttttttgCTAATTTAATCATTCAAAAGTTCATCAAGTCAAGCGGATtagagcggttttcaaatgactgtcgaaaaaccaaaaccaaagcaattactccgaccaatcatgacagaggcaaacagcgcgatgaaccaatcacaattcctagcaattacatgtaactcgctcgaagcgcgggaaaaatcacgcgtacatggtgcgattggttttggttttgattcttattggttgaaaaactggcgcgagtcttttaagccaatcactaagcgtagcaatcgcaatcacgtaattactttcgacagtcaattgaaaactgctctatttaccaagtcaaaaattagttgtaaacaaatTAAAGATAATGTTGCTTGGTTATTTGATCAACACATATATCATCTAAACTATAAAATTGGAacctttttagtttgtatcttttgtttacccaattcagatcacgtgatattctcattctttgtgttttcataagttatacgtacatttgcacgtgcataagacgacatttgaaaggaaccattcgctagaatagcatcaggtggtctgcaatgggaagcgaaacatacaagctgaaaaggtctattGAAATACTAATggccaatttcgatattttaaaattcagccgtaaacaatagacctcagcacgaggctccagggaataaacactgtattgtattccccggaccctcgtgctgaggtctgttgtttTGGCCTATTGATTGGATTCCCTACAACTATATTTTGAGTGAGGTGGCATGCGCATTCTGATTGGTCATTTTTGGGGACAGAAAGTGCAGCCTTCTAAATTTGTTGCCGGATTAAGAAATCGTGAAATGCAATAAATGTCTTAGAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50174	Acetyl-CoA acetyltransferase OS=Rhizobium meliloti (strain 1021) OX=266834 GN=phaA PE=3 SV=1
Q9BWD1	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens OX=9606 GN=ACAT2 PE=1 SV=2
P07097	Acetyl-CoA acetyltransferase OS=Shinella zoogloeoides OX=352475 GN=phaA PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001062 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00108 all species →	Thiolase_N	Thiolase, N-terminal domain	Domain	Interproscan
PF02803 all species →	Thiolase_C	Thiolase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020610 all species →	Active_site	Thiolase, active site	Interproscan
IPR020616 all species →	Domain	Thiolase, N-terminal	Interproscan
IPR020617 all species →	Domain	Thiolase, C-terminal	Interproscan
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR020613 all species →	Conserved_site	Thiolase, conserved site	Interproscan
IPR002155 all species →	Family	Thiolase	Interproscan
IPR020615 all species →	Active_site	Thiolase, acyl-enzyme intermediate active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18919 all species →	ACETYL-COA C-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0003985 all species →	Molecular Function	acetyl-CoA C-acetyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00626	ACAT, atoB; acetyl-CoA C-acetyltransferase	EC:2.3.1.9	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.