Detailed information of amic_s0171.g18.t1 in Acropora microphthalma

Genomic Location: sc0000171_pilon:523792...566703
NR annotation: XP_044165145.1, nephrocystin-3-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P0CI65Nephrocystin-3 OS=Danio rerio OX=7955 GN=nphp3 PE=3 SV=1
A0JM23Nephrocystin-3 OS=Xenopus tropicalis OX=8364 GN=nphp3 PE=2 SV=2
Q6AZT7Nephrocystin-3 OS=Xenopus laevis OX=8355 GN=nphp3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003647 (this species only)

 Pfam domain
No Pfam domain signature was detected for amic_s0171.g18.t1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR051191
all species →		FamilyDDB1-CUL4-associated factor 12Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19860
all species →		DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0080008
all species →		Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0171.g18.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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