Gene detail

Detailed information of amic_s0178.g3.t1 in Acropora microphthalma

Genomic Location: sc0000178_pilon:69696...185479
NR annotation: XP_044178243.1, ephrin type-A receptor 4-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0178.g3.t1

ATGGAGCATTTCTGGGTCACTGGGTTAATTGTTTTGGTGTTTTCAAGTTTGGTGTCGTCGGAGCAGAAGTATATAATGGAAGCACCAGACAGCAGCACTCGCATTTGGTCTTGGAATACAGCAGCGTACGTCCAATTTCCTGGCCTCATTGGGACGTGGTATCAACCAATTGGACAGCAACCCAGATATTCTATTTGCAATCTGGATAACCCCCAAGAACCAAATAACTGGTTACGAAGTCCTATCATTAAAGTTGGAGACATTCAAAGATTAGATGTCACCTTTAGATACTTTTCGCGGCAGTGCGGTCAATCTGCTTCTTTTTGTCAGGAATCTTTTTACGCGTATGTCTGGGAATCGAATACAAGTGTCATTCCGCGACAAATTCCTCATCCTATCAACGACTTTCAGTTATATCGACGTTTCGCTAATATCACTCGTCAGTCTGACCAAGATACAATTTTGACAGTACCCCTTCATGTGACCAGCAAATATATTGTGCTGGGAATTCGCGATCAAGGAGGATGCAGAACATTGTATTCCGTGAAAGTCTCTTATAAGGTTTGCGTTAAAAAGACACTTAAGGACCGCCTGGTATCTTTTCCTTCAATGTTAGCCCAAGTAGAGTCAACGCCTGTGCAAGGAATTTGCATGACGAACTCTAGGCAAATTGTGCCTGGCAATTTGACTGTTTTATGTGATAGCGATGGAGTGTGGAATACCAGTCGACTTGAAAGCAGATGTGTTTGCAAGAAAGACATGGAGAACAGACAAGGGAAATGCACAGCGTGTCCTGGTGGAACATACAACGAAGGGAGAGGACTTAATTGCACCGAAACACCATCAAAGCCACGAAGTGCGTCCGTATATTTCGTTAATGAAAGCTCAACTATCTTAACTTGGTTGGTTCCTGAGATCACTGGAACTCCAAACAACGTGTGGTATGATGTGAATTGTCGCCTGTCGTGCGAATATGTTAGGGGCTGTGAAAAAGAAACCTGCAACAGCGACATCAACGGCCAATTGACAGGGGAAGGGCTTAAAACGACTATCTTCACCTTAGCAAATCTGGCTTCCTTTGTAAACTATACTTGTAAAATAACTGCCAAGAACAGAGTCAGCAAGATTGCTGCTGCAAAAACACAGGCCTCTGAAAGCGAACGAAGCGTTACTTATGTAACTCTGAGGACCAAAGGATCTGTTCCTGGTGCACCTGAATATGATAGTGTCACTTATCACCACGAAACTAATTCTATCACCCTTTCATGGATTGTGAAATGTAAAAATGGCATTATTCAAGAGTACAGGATAGAATACTTCAGCGTGGACGATTTCTCTGGGAATAAAAAGCTGAGTACTAGAGACCCCAAAATACAGATAGGCAGTCTCCCGGCGGGGAAAACCTTAAGATTTCAGgtgtatgctgtgaataactttgggataggatcacctggtgtcacaacgttccatattctgaaagGCCATGAGGGTGATGATGTTTATCAGCAAACTGTTCGAACATTGAACGCATATTTTCAAGTGCAAGAAAATGCAGCGTACGAAAGGCATGTTCTTCGCCAGCTACGCCAAGAACCCGGAGAAGATGTCGACTCATTTGTGCTTCGACTTCGTAAACAAGCAAGACATCGTGGCTATGGGCAAGCGGAAATTGAATTCGCCGTGAGAGATCAGTTGTTGAAGAAAATCTCTTCCCTGGAATTACGGACCAAGCTGTTTGAGGAGCCAAATATACAGCTTGCTGCAGCGATAGATAAGGCGAGAGCGTGGGAAACGGCACGGCGTCAGGCGAGCAGCATTGCTGACGGAGAAGGAGGGCAGAGTAACGTGAACATGGTAAGGGACCGTGATGGCAAGAAAACCTCAACTGGATTTGGTAAGCAGAAATGTTATGCATGCGGCAAGATGGGACATTCTGCTCGTGACAAAATATGTCCAGCTCGGGGTAAAACGTGTGCTAAGTGCGGTGATATGGGGCACTGGGCAGCTTGTTGTAAAAGTGAGGCTGACAGCAAGAACAGTGGTAAAGAGGGTGGTAGAGTGAGAGATGAGAGAGCGCGTGGTGGTAAACAGAGGCGTTCCAAAGATGCCAAACATGATCCAAAATCAAGGAACAAGCAAGTTAATCAAGTAGAATACGACGGTGGAGATGAGGCTTTTGCATTCCCTATCGATTTCAACGGGGAGACAGCCTGTGAGGACAATGTGATAATGGTGAAGATCGATAACACAACCACAAGCATGCTTGTTGACTCTGGTGCCCAGTCTCCTGTCCTTGGTAAGAAGCAGTTTGACCCCCTTGTGAGGGATGGCCTTAAAGCAAAACTGCAACTAGAAGAAAGAAATTTGCGAGTGTATGGGAATGGCTACTTACCGGTTGTGGGCGACGAAGAGGAGGAAAAGTCAGGTGCTACCGATCAGCAGGCCCGATATCAGGATGCAGAGAAGAAAAAGCGAGGGCCTGAAGCTGCAAATAGGAGAGCTGCGGAGTCGGACGTAGCAGAAGGAGACAAGGTGCTGTTATTGCAAAAGAAACAAAACAAACCGTCTACAAAATATGATCCAGATCCATACAATGTGGTATCCAAGAAAGGAGACCTAGTGGTCATTGAGCGAGGTGAAACCCAACTTAAGAGGAATGTAGGCCATGTGAAGAGGTTCATAGTATCCACACCCCAGACTCGGCAGCCACAGAATGTTGGAATACAGCCATTAGCGCAGCCATTGGTTCAGCAACCGGTGACGGAACCTGCTACCCTGCCTGCCCCTGAGCCGGTTGAAGTCTTACCACAAGAAGCAGTGACTAAGTTTATGTGGGAACCTTCACCACAACCTGTTGTTGCTCGGGTACCAGAACGGAGCGGCGAACCTCGAAGATCTATGCGGCAGAGAAATGAGCCAAGATGGCTTAAGGACTATGTCACGTGA

Transcript

amic_s0178.g3.t1

agaagtataTtgggtaacagctttctctatatcttagcagtgtcattcacatctccaccatgaaccgtcgtggaattaatgtttctctctaacattggctcgtgttcttgcgtttatgcgattcttctacagtctgcagacttttaattgcctattgagtgAGCAAGAGATTCACATGGAGCATTTCTGGGTCACTGGGTTAATTGTTTTGGTGTTTTCAAGTTTGGTGTCGTCGGAGCAGAAGTATATAATGGAAGCACCAGACAGCAGCACTCGCATTTGGTCTTGGAATACAGCAGCGTACGTCCAATTTCCTGGCCTCATTGGGACGTGGTATCAACCAATTGGACAGCAACCCAGATATTCTATTTGCAATCTGGATAACCCCCAAGAACCAAATAACTGGTTACGAAGTCCTATCATTAAAGTTGGAGACATTCAAAGATTAGATGTCACCTTTAGATACTTTTCGCGGCAGTGCGGTCAATCTGCTTCTTTTTGTCAGGAATCTTTTTACGCGTATGTCTGGGAATCGAATACAAGTGTCATTCCGCGACAAATTCCTCATCCTATCAACGACTTTCAGTTATATCGACGTTTCGCTAATATCACTCGTCAGTCTGACCAAGATACAATTTTGACAGTACCCCTTCATGTGACCAGCAAATATATTGTGCTGGGAATTCGCGATCAAGGAGGATGCAGAACATTGTATTCCGTGAAAGTCTCTTATAAGGTTTGCGTTAAAAAGACACTTAAGGACCGCCTGGTATCTTTTCCTTCAATGTTAGCCCAAGTAGAGTCAACGCCTGTGCAAGGAATTTGCATGACGAACTCTAGGCAAATTGTGCCTGGCAATTTGACTGTTTTATGTGATAGCGATGGAGTGTGGAATACCAGTCGACTTGAAAGCAGATGTGTTTGCAAGAAAGACATGGAGAACAGACAAGGGAAATGCACAGCGTGTCCTGGTGGAACATACAACGAAGGGAGAGGACTTAATTGCACCGAAACACCATCAAAGCCACGAAGTGCGTCCGTATATTTCGTTAATGAAAGCTCAACTATCTTAACTTGGTTGGTTCCTGAGATCACTGGAACTCCAAACAACGTGTGGTATGATGTGAATTGTCGCCTGTCGTGCGAATATGTTAGGGGCTGTGAAAAAGAAACCTGCAACAGCGACATCAACGGCCAATTGACAGGGGAAGGGCTTAAAACGACTATCTTCACCTTAGCAAATCTGGCTTCCTTTGTAAACTATACTTGTAAAATAACTGCCAAGAACAGAGTCAGCAAGATTGCTGCTGCAAAAACACAGGCCTCTGAAAGCGAACGAAGCGTTACTTATGTAACTCTGAGGACCAAAGGATCTGTTCCTGGTGCACCTGAATATGATAGTGTCACTTATCACCACGAAACTAATTCTATCACCCTTTCATGGATTGTGAAATGTAAAAATGGCATTATTCAAGAGTACAGGATAGAATACTTCAGCGTGGACGATTTCTCTGGGAATAAAAAGCTGAGTACTAGAGACCCCAAAATACAGATAGGCAGTCTCCCGGCGGGGAAAACCTTAAGATTTCAGgtgtatgctgtgaataactttgggataggatcacctggtgtcacaacgttccatattctgaaagGCCATGAGGGTGATGATGTTTATCAGCAAACTGTTCGAACATTGAACGCATATTTTCAAGTGCAAGAAAATGCAGCGTACGAAAGGCATGTTCTTCGCCAGCTACGCCAAGAACCCGGAGAAGATGTCGACTCATTTGTGCTTCGACTTCGTAAACAAGCAAGACATCGTGGCTATGGGCAAGCGGAAATTGAATTCGCCGTGAGAGATCAGTTGTTGAAGAAAATCTCTTCCCTGGAATTACGGACCAAGCTGTTTGAGGAGCCAAATATACAGCTTGCTGCAGCGATAGATAAGGCGAGAGCGTGGGAAACGGCACGGCGTCAGGCGAGCAGCATTGCTGACGGAGAAGGAGGGCAGAGTAACGTGAACATGGTAAGGGACCGTGATGGCAAGAAAACCTCAACTGGATTTGGTAAGCAGAAATGTTATGCATGCGGCAAGATGGGACATTCTGCTCGTGACAAAATATGTCCAGCTCGGGGTAAAACGTGTGCTAAGTGCGGTGATATGGGGCACTGGGCAGCTTGTTGTAAAAGTGAGGCTGACAGCAAGAACAGTGGTAAAGAGGGTGGTAGAGTGAGAGATGAGAGAGCGCGTGGTGGTAAACAGAGGCGTTCCAAAGATGCCAAACATGATCCAAAATCAAGGAACAAGCAAGTTAATCAAGTAGAATACGACGGTGGAGATGAGGCTTTTGCATTCCCTATCGATTTCAACGGGGAGACAGCCTGTGAGGACAATGTGATAATGGTGAAGATCGATAACACAACCACAAGCATGCTTGTTGACTCTGGTGCCCAGTCTCCTGTCCTTGGTAAGAAGCAGTTTGACCCCCTTGTGAGGGATGGCCTTAAAGCAAAACTGCAACTAGAAGAAAGAAATTTGCGAGTGTATGGGAATGGCTACTTACCGGTTGTGGGCGACGAAGAGGAGGAAAAGTCAGGTGCTACCGATCAGCAGGCCCGATATCAGGATGCAGAGAAGAAAAAGCGAGGGCCTGAAGCTGCAAATAGGAGAGCTGCGGAGTCGGACGTAGCAGAAGGAGACAAGGTGCTGTTATTGCAAAAGAAACAAAACAAACCGTCTACAAAATATGATCCAGATCCATACAATGTGGTATCCAAGAAAGGAGACCTAGTGGTCATTGAGCGAGGTGAAACCCAACTTAAGAGGAATGTAGGCCATGTGAAGAGGTTCATAGTATCCACACCCCAGACTCGGCAGCCACAGAATGTTGGAATACAGCCATTAGCGCAGCCATTGGTTCAGCAACCGGTGACGGAACCTGCTACCCTGCCTGCCCCTGAGCCGGTTGAAGTCTTACCACAAGAAGCAGTGACTAAGTTTATGTGGGAACCTTCACCACAACCTGTTGTTGCTCGGGTACCAGAACGGAGCGGCGAACCTCGAAGATCTATGCGGCAGAGAAATGAGCCAAGATGGCTTAAGGACTATGTCACGTGAAAGACTGAGCTAAGCTGACTTATAAAAGACTCTGCTACTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF01404 all species →	Ephrin_lbd	Ephrin receptor ligand binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR001090 all species →	Domain	Ephrin receptor ligand binding domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005005 all species →	Molecular Function	transmembrane-ephrin receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0048013 all species →	Biological Process	ephrin receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0178.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.