Detailed information of amic_s0182.g48.t1 in Acropora microphthalma

Genomic Location: sc0000182_pilon:697234...698899
NR annotation: XP_015769948.1, PREDICTED: homeobox protein Nkx-6.3-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6GLB9Homeobox protein EMX1 OS=Xenopus tropicalis OX=8364 GN=emx1 PE=2 SV=1
Q804S6Homeobox protein EMX1 OS=Danio rerio OX=7955 GN=emx1 PE=2 SV=1
Q04742Homeobox protein EMX1 OS=Mus musculus OX=10090 GN=Emx1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000082 (this species only)
Transcription factor familyHomeobox · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR050877
all species →		FamilyEMX/VAX/Noto Homeobox Transcription FactorsInterproscan
IPR020479
all species →		DomainHomeobox domain, metazoaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24339
all species →		HOMEOBOX PROTEIN EMX-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007417
all species →		Biological Processcentral nervous system developmentInterproscan
GO:0030182
all species →		Biological Processneuron differentiationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0182.g48.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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