Gene detail

Detailed information of amic_s0182.g55.t1 in Acropora microphthalma

Genomic Location: sc0000182_pilon:747895...770613
NR annotation: XP_044172715.1, exportin-7-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0182.g55.t1

ATGGAAGAACAGGAGATCGCACAACTCGACCTCCTTTGCAAACAGCTGTATGAGGCTACGGACACTGCAACTCGAAACGCAGCTGAGAGGGCTCTGTCCACCTTCACCAACTCCCCCGATTGCCTCACAAAATGCCAATATCTTCTTGAACGTGGAAACTCTTCTTATTCTCAGCTGATTGCTGCATCTTCTTTGACTAGGCTTATCAGTAAAAATACTACTATCTCTGTTGAACAGAGGCTACACATGCGAAACTATGTCTTGACCTATCTTGGGACAAGACCAAATCTGGCTTCTTATGTTTCACAGTCCTTGATACAGTTTCTGGCAAGACTGACAAAATTGAGCTGGTTTGATGTTCAGAAAAATGAATTTGTGTTCAGAACCATTGTAGATGATGTTGGAAAGTTTCTTCAGGGCTCTGTAGACCATTGTATCATTGGTGTTCATGTCTTGTCACAGCTTGTATGTGAAATGAACCAGGGTGATTCAACGCGATCTCTCACAAAGCACAGAAAGATTGCATCCTCTTTCAGAGATTTATCACTTTTCAATATTTTCAACCTGTCCATAACACTTTTACGTGAAGCCTACAACAAACAGCTGAACTTGCAAGATGGAAGTCAGCATTCATTGATGAGCCACCTTCTTCAACTGACGTGCAGTTGCCTGTCGTTTGACTTCATTGGCACATCCATGGATGAGTCATCAGATGACCTTGGCACAGTTCAGATTCCAACAAACTGGAGAGGAGCATTTCTAAATTTTGCTACCCTTCAGCTGTTTTTTGACCTTTACAGAGCTTTACCAACTTCACTATCACCCATGGCTCTGTCTTGCTTGGTTCAGCTGGCATCAATAAGGCGATCATTGTTTAACAACACTGAGAGAGCAAAATTTCTTGAACAGCTTGTTCTGGGTGTCAAAGGAATTCTTGAATCACCACAGTCACTTGCAGACCCCAACAATTATCATGAGTTTTGTCGACTCCTGGCAAGACTGAAGTCAAACTATCAACTTGGTGAAATAGTGAAGGTGGAAGTCTACAGGGATTTCATTGCACTAATAGCAAAGTTCACAGTTACCAGTTTACAGATGTGGCAATTTGCTCCAAACAGCTTGCATTATCTTTTGAGTTTGTGGCAAAGGATGGTTGCTTCAATGCCATATGTCAAAAACACAGAACCACATCTTCTGGAATCTTATGTTCCTGAGGTCACCAAAGCGTATGTTACATCAAGGCTGGCTTCTGTTGAGGCAGTGATAAGGGACAATGTAGAGGATCCACTGGATGATACTGGTACAGTTCAACAGCAGCTTGACCAGCTTTCCACCTTTGGAAGGTGTGAATATGAGAAGACTTGCCAGCTATTGATCTCATTATTTGATCAAGCAGCACAAAGCTATCAAGAGTTGGTTCAAAGCACCTCCGCTTCTACCAATGATATGGCGATTCAGGAAGGTCGGTTGACGTGGCTTGTTTACATCATTGGTTCAGTAATCGGTGGTCGAGTATCTTATTCCACCATAGATGAGTATGATGCCTTGGACGGCGAATTGGTTTGTCGAGTTTTGCAGTTGATGAATTTAACAGATTCGCAACTTTCTCAGCGCGGAAGTGAGAAGTTGGAACTTTCCATTTTGAGTTTCTTTGAGCAGTTTCGCAAGATGTATGTTGGAGATCAGGCACAAAAAACATCCAAGGTGTATCGGCGGCTGTCCGAAAGACTTGGACTTCATGATGAATCAAATGTTTTGAGTGTCTTCATGGGCAAAATAATCACAAACATGAAGTTCTGGGGCAGCAGTGAAGCAATCATCTCTAAAACGCTGCAACTTCTCAGTGACCTGTCTATCGGATATCCTTTTGTGTTTGTAGACGATTTCAAGGTGggaggcagcgtggccgagtggtttaaggcgcagAAGATATGGAATTGTTCCTTAATACACTTTAATTATAGCAGTGCCCGTAAACTGATCAAGTTAGAAGCTGTTCAGTTTGTGCTCAACAACCACACGAGTGAACATTTTCCATTCCTTGGAATTCACGCCTCGCGACCGTACAAAGACATGCGCAGTAGAACCACATTTTATATTGCCCTTGGTAGACTGCTTATGGTGGACTTGGGAGAAGACGAAGACAAATTTGAAACATTCATGACTCCTATCACAGTTGCAATGGATTCAGTAGCGAGTCGCTTGGTGTCCGCTGAAAGGAATGCCTTCCAACTTGAGGAAACAAAGCGTACCTTGGTTGGCCTGTGCCGCGACATACGTGGGCTCTCTTTTGCTTTCAGTAAATCGAGTTACATGATGCTGTTTGACTGGATCTATCCTACATACACTTCAGTTCTTCTCCGTGCAATAGAGTGGTGGTACCACGACCCTAATGTTTCCACACCAGTACTAAAACTCATGGCTGAACTCGTTCAGAATCGATCACAGAGACTGCACTTCGACGTGTCTTCACCTAATGGAATCCTTCTCTTCCGTGTTACTAGCGAAATGATCGTCGCGTATGGTTCTCGTATCTTAACATTGGGAGACATCTCTGCAGATCAAGTGTACCCACTCAAACTCAAGGGAATCTCCATTTGCTTTTCGATGCTAAAGGCTGCATTATGTGGTGGTTACGTCAATTTTGGTGTGTTTAGCTTATATGGAGATGATACTTTGGAGAAAGCTTTGAAAACGTTCGTGGAACTTTTATCTTCTATCCCTCACAGCAATTTATTGGAATATCCGAAACTGAGTCAGTCGTATTATGCATTGTTGGAGATTCTAGCTCAAGATCACATGAATTTTCTAAGTAGCCTTGAACCTAGAGTATTTATTTACATTTTATCCTCCATATTGGAGGGCCTCACTGCCTTAGATATTATGGTCTGTACGGGATGTTGTGGCACATTAGATTTCATAGTGACACATCTATTCAAAACGCTCTCAAAGAGAAGAAAGAAGAATCTCCCTGCATTGGACCAACAGCCCCCATGTTTAAGAATTTTGGAATCACATCCGGAAATGATTCAGCAGATGCTGTCGACAGTTCTGAACATTGTTATGTTTGAGGATTGCAAAAATCAGTGGTCGATGTCCAGGCCTCTACTTGGCTTAATTCTCTTGAACGAAAAGTACTTCCAAGAGTTGCAGCGAAATGTTATAGCAATGCAACCAGTCGAAAAACAGGAAGACATGGCACAGTGCTTCAGGAATCTCATGGAAGGAGTAGAACCATCACTTATAACCAAAAACAGGGACAGGTTTACGCAGAACTTGTCAATATTTCGACGAGAGGTCAACAACTCCTTAAAGGCATCAAGCAACGGAACAAGTGTACTCAAACCAGATGGCGGAATTGATATGGTGGCGTGA

Transcript

amic_s0182.g55.t1

ATGTATGGCAACCAGGCGGGGCTGGTGTTGGCACATCCAACTTTGCCAACGCAATTTTACGTCATCAAGCAGGACTTTAAACTGCCAACATATATTTCTGTTTGTCACCTCTGCCCAAAGAAGAACCAGTTATTTGACAGGTGCAGAGAAGTGGCAACCAGATATATTCAGGCTTCCGCTCCATAGCATGCCGTGGGAGGGTGGCTGTTCGGTCCTCAACCACAGCTACCACATTTTTTTGTTTGGACCACCCGCTTAAATGGGTGTCTAACACCCTACTTGCATTGCCGTAATTTAACACTGATGTTACACCCTTACAAACGTTAAGTTTCGGCTGGTTATCGCTTTGTCGGGCACTGTGGCGCATTTTACGGGCTAAAATGGAAAAATTCCGCTGAAATAAACCAATGAAAAGTGAGAATCAAATACTAAACGGCCAATCAACACCGAGAAGCCAGTTCAGTGTTTGTTGACGTTTTCTTGCAGCGTTGGTGAAGGAAATATTCTTCAAACTCTTTTTCCTTTTTGTCATCATTCTTAGTTTTTATTTTCTCGATGCCCTCCACAGTGATACTTACAGTAGTATagtttatgttcttgggcataagtacattttgggcccttcgattctaagaactcattgtaaccGTAGCTAGTTGCAGTAAACGGGGGTCACTTCCTCCCGCGAAAAACTATATTCAAATTATTGAGCCTTCATACGATGACGTCATCAGCGAACTTTCTTTATGCGCGTGCAACGTGCGCCTGACCACGTCTGATTCCAAAACAAGTATGGAAGAACAGGAGATCGCACAACTCGACCTCCTTTGCAAACAGCTGTATGAGGCTACGGACACTGCAACTCGAAACGCAGCTGAGAGGGCTCTGTCCACCTTCACCAACTCCCCCGATTGCCTCACAAAATGCCAATATCTTCTTGAACGTGGAAACTCTTCTTATTCTCAGCTGATTGCTGCATCTTCTTTGACTAGGCTTATCAGTAAAAATACTACTATCTCTGTTGAACAGAGGCTACACATGCGAAACTATGTCTTGACCTATCTTGGGACAAGACCAAATCTGGCTTCTTATGTTTCACAGTCCTTGATACAGTTTCTGGCAAGACTGACAAAATTGAGCTGGTTTGATGTTCAGAAAAATGAATTTGTGTTCAGAACCATTGTAGATGATGTTGGAAAGTTTCTTCAGGGCTCTGTAGACCATTGTATCATTGGTGTTCATGTCTTGTCACAGCTTGTATGTGAAATGAACCAGGGTGATTCAACGCGATCTCTCACAAAGCACAGAAAGATTGCATCCTCTTTCAGAGATTTATCACTTTTCAATATTTTCAACCTGTCCATAACACTTTTACGTGAAGCCTACAACAAACAGCTGAACTTGCAAGATGGAAGTCAGCATTCATTGATGAGCCACCTTCTTCAACTGACGTGCAGTTGCCTGTCGTTTGACTTCATTGGCACATCCATGGATGAGTCATCAGATGACCTTGGCACAGTTCAGATTCCAACAAACTGGAGAGGAGCATTTCTAAATTTTGCTACCCTTCAGCTGTTTTTTGACCTTTACAGAGCTTTACCAACTTCACTATCACCCATGGCTCTGTCTTGCTTGGTTCAGCTGGCATCAATAAGGCGATCATTGTTTAACAACACTGAGAGAGCAAAATTTCTTGAACAGCTTGTTCTGGGTGTCAAAGGAATTCTTGAATCACCACAGTCACTTGCAGACCCCAACAATTATCATGAGTTTTGTCGACTCCTGGCAAGACTGAAGTCAAACTATCAACTTGGTGAAATAGTGAAGGTGGAAGTCTACAGGGATTTCATTGCACTAATAGCAAAGTTCACAGTTACCAGTTTACAGATGTGGCAATTTGCTCCAAACAGCTTGCATTATCTTTTGAGTTTGTGGCAAAGGATGGTTGCTTCAATGCCATATGTCAAAAACACAGAACCACATCTTCTGGAATCTTATGTTCCTGAGGTCACCAAAGCGTATGTTACATCAAGGCTGGCTTCTGTTGAGGCAGTGATAAGGGACAATGTAGAGGATCCACTGGATGATACTGGTACAGTTCAACAGCAGCTTGACCAGCTTTCCACCTTTGGAAGGTGTGAATATGAGAAGACTTGCCAGCTATTGATCTCATTATTTGATCAAGCAGCACAAAGCTATCAAGAGTTGGTTCAAAGCACCTCCGCTTCTACCAATGATATGGCGATTCAGGAAGGTCGGTTGACGTGGCTTGTTTACATCATTGGTTCAGTAATCGGTGGTCGAGTATCTTATTCCACCATAGATGAGTATGATGCCTTGGACGGCGAATTGGTTTGTCGAGTTTTGCAGTTGATGAATTTAACAGATTCGCAACTTTCTCAGCGCGGAAGTGAGAAGTTGGAACTTTCCATTTTGAGTTTCTTTGAGCAGTTTCGCAAGATGTATGTTGGAGATCAGGCACAAAAAACATCCAAGGTGTATCGGCGGCTGTCCGAAAGACTTGGACTTCATGATGAATCAAATGTTTTGAGTGTCTTCATGGGCAAAATAATCACAAACATGAAGTTCTGGGGCAGCAGTGAAGCAATCATCTCTAAAACGCTGCAACTTCTCAGTGACCTGTCTATCGGATATCCTTTTGTGTTTGTAGACGATTTCAAGGTGggaggcagcgtggccgagtggtttaaggcgcagAAGATATGGAATTGTTCCTTAATACACTTTAATTATAGCAGTGCCCGTAAACTGATCAAGTTAGAAGCTGTTCAGTTTGTGCTCAACAACCACACGAGTGAACATTTTCCATTCCTTGGAATTCACGCCTCGCGACCGTACAAAGACATGCGCAGTAGAACCACATTTTATATTGCCCTTGGTAGACTGCTTATGGTGGACTTGGGAGAAGACGAAGACAAATTTGAAACATTCATGACTCCTATCACAGTTGCAATGGATTCAGTAGCGAGTCGCTTGGTGTCCGCTGAAAGGAATGCCTTCCAACTTGAGGAAACAAAGCGTACCTTGGTTGGCCTGTGCCGCGACATACGTGGGCTCTCTTTTGCTTTCAGTAAATCGAGTTACATGATGCTGTTTGACTGGATCTATCCTACATACACTTCAGTTCTTCTCCGTGCAATAGAGTGGTGGTACCACGACCCTAATGTTTCCACACCAGTACTAAAACTCATGGCTGAACTCGTTCAGAATCGATCACAGAGACTGCACTTCGACGTGTCTTCACCTAATGGAATCCTTCTCTTCCGTGTTACTAGCGAAATGATCGTCGCGTATGGTTCTCGTATCTTAACATTGGGAGACATCTCTGCAGATCAAGTGTACCCACTCAAACTCAAGGGAATCTCCATTTGCTTTTCGATGCTAAAGGCTGCATTATGTGGTGGTTACGTCAATTTTGGTGTGTTTAGCTTATATGGAGATGATACTTTGGAGAAAGCTTTGAAAACGTTCGTGGAACTTTTATCTTCTATCCCTCACAGCAATTTATTGGAATATCCGAAACTGAGTCAGTCGTATTATGCATTGTTGGAGATTCTAGCTCAAGATCACATGAATTTTCTAAGTAGCCTTGAACCTAGAGTATTTATTTACATTTTATCCTCCATATTGGAGGGCCTCACTGCCTTAGATATTATGGTCTGTACGGGATGTTGTGGCACATTAGATTTCATAGTGACACATCTATTCAAAACGCTCTCAAAGAGAAGAAAGAAGAATCTCCCTGCATTGGACCAACAGCCCCCATGTTTAAGAATTTTGGAATCACATCCGGAAATGATTCAGCAGATGCTGTCGACAGTTCTGAACATTGTTATGTTTGAGGATTGCAAAAATCAGTGGTCGATGTCCAGGCCTCTACTTGGCTTAATTCTCTTGAACGAAAAGTACTTCCAAGAGTTGCAGCGAAATGTTATAGCAATGCAACCAGTCGAAAAACAGGAAGACATGGCACAGTGCTTCAGGAATCTCATGGAAGGAGTAGAACCATCACTTATAACCAAAAACAGGGACAGGTTTACGCAGAACTTGTCAATATTTCGACGAGAGGTCAACAACTCCTTAAAGGCATCAAGCAACGGAACAAGTGTACTCAAACCAGATGGCGGAATTGATATGGTGGCGTGACATGACAGGTGTGGCGTGACACGACTGGCCAGTCAATACGAGGATTGTAGCCCCATGATTGTGAGTGCTACTTCTGTGACAGAATCAGCAGTTTCACTGATTTCCAAAGTATTTGCGAGAATTTGAACCTGAGGTGGCTCGAGTAGGATGCTAGAATGAAAAGAAAGTTCTGCCCAAGCGAACACGTTATTTTGTTTAAAATAAGTCGTTCCATGCGTGACAGTGAAGTTATCATTTTAGCCAGTTTGTTGCTATTTTCCCAATCCTTTGCTCGAACGTAATTGCTGTGGACAAGAAGCCATGCATGATGAAAGCACCGAATGGGGTCTGGGTACGACTACAAAAAAAATCACCTAAAATGGAAATTTAGGGGCAAAGATTCGTACGTTTTCTGAGGAAGAGGTTCGGAATGGTTTGAGGAGGAAAATGTACTCTTTAAATTTTTTTCAAAAATCTCGAGTGTGAACAAATTTCAAACATTTGAAAGCCTGTTCCGCTTGCAGTCAGGATTGGTGTAGGGTTAGGGTTCGGGTTAGTTGACTTAGAGCAAAATTGATATAATATGCTAAGCCCTCGGTTGTTTCAAAGGTTGCTGATTGTAACTACGTAGTCGATCATGTCGCTAATTAAAGCAACAGGAAAGAACACTAGTGGTAATAGAGAAAGCGAATGATAAGGCTCTCGGCTACCGAGTCGCGACAGACCACTTTCAAATGGTTCTGCTTAACCTGGCCCCTGAATAGGTACAAAATAGTCTTCGTATTATTGCCTCCAACCAGTGAACATCACTGCGTGAGTTCTTGTATTGTGCTACTTGTGCAGCTTGAGTGCTAAGGTTTTGTGAGTGAGGAAAGCTTGGGCTATGTTGTTAGAGCTAGTTGTCGATATGGAAAAGCCTTTCAGGCGCCTGAAAGAGAAGCTTATTCTAATTTATATTGAGAAGTACTTGCCCAATCTGAAAATGCTTTTCTCCGTGGTCTGCTGTCACTCGGCAGCCAGAGACTCCTAAATAGTTTTTGGAAGGTTTCGTAGCCGACTGCTTTTGGATATCTTAAAATGCTAGCTCATATTACAGCCTTCCCAAAAAGCTAGTATTAAACATCGTGGAAGGCGATGGACGCGTGCGAAAATGTCACTGATTTTTTCTTCGATTGAATTGTGTTGCGCAGTGAACACTGTGTGGTCTTCGTTAACCCCGCGACGCTCTTTGACTACAATGATGTGTCAAATCGAGGCTTTGAGATGTGTGCGAACCGTACTTGCTAGAAAAGCCGTAAATCGCAGGGCTAGATTCGTGTTGTGTTTGTGTGATATTTTGTGTGTGATAGAATGAAGTCAATTTGAAATGAACCAAATTGCGAACTATTCAGCGGAGTGTCTTATGTACACGAAGTGGTAGCAGTTTCAGTGCGTTTTCGTAGTTTAGTATTTATGAGAACTCCTTGTTCCCTGTATCTTGCTTTCTAACCCCGTAAGCAAATTTCACGTTGTTCAGTTGATATTGTATTGAGTCAAATAAAGTTTGGAAATGGCAAACAACTTGAAAAGTATTGTCAACAGCAACAGGAAGTGTCAGTAATGTAAAAGAAGTCCTTTTGTGAACGTATTGTTACTCGTGTCAAACTGTAGGTCGCACTAGTCAAAAATATGTTGCCGTTCTTCGCAATGCTCACGACCGGCTTACTGCGCAGGCGCTAACTTTTCTCGAGCCCAGAGCTCTTCTCTTTTTCGCGTAGTCTTCCGAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZLT0	Exportin-7 OS=Gallus gallus OX=9031 GN=XPO7 PE=2 SV=1
Q9EPK7	Exportin-7 OS=Mus musculus OX=10090 GN=Xpo7 PE=1 SV=3
Q9UIA9	Exportin-7 OS=Homo sapiens OX=9606 GN=XPO7 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002883 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044189 all species →	Family	Exportin 4/7-like	Interproscan
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12596 all species →	EXPORTIN 4,7-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005049 all species →	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006611 all species →	Biological Process	protein export from nucleus	Interproscan
GO:0051169 all species →	Biological Process	nuclear transport	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18460	XPO7, EXP7; exportin-7	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.