Gene detail

Detailed information of amic_s0182.g57.t1 in Acropora microphthalma

Genomic Location: sc0000182_pilon:793424...832934
NR annotation: XP_044172718.1, LOW QUALITY PROTEIN: FHF complex subunit HOOK interacting protein 2A-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0182.g57.t1

ATGCCCATATTTCATTTAATATTTCCAGCTTTGAACAGTGTCACTGAATATTACCGCGAAGACGAGGAAAGGATTGAGTGGTGGAACGACTGTGAAGCGAGAGACCAAAGAGCCCGCATCGAGAAAACGTTTAAACACGGTCGATACTCCAGAGAGAGCCACACCTTAGGGTTCACCAATGGCAAATGGTACTGTTGTTTTAAACAAGCAGGCTTGAGGGCCAAAGGACAGCCTCTTGATGATGAGGAGACTGAGAAGCCCTTGAGGGCCAAAGCACAGCCTCTTGAAGATGAGGAGACTGAGACAACCTTGAGGGCAAAAGCACAGCCTCTTGATGATGAGGAGACTGAGACGCATTTGAAAGAATGTCTTTCAGCAGTACTAGAGATGTTCAATAAGATCAAGTCTTTCATTCATGAGGCTGTCGAAGCTCTTGCTCCTGATGTCCCTCCACAAGAGACATTCGTCTTCCATTGGAAAGCTATTACAAACTACTTCATCGAAGCTACAGATGAAAAAGTTCCAGTGCAGTCCACTAACATTCCATATCATCTGGAGCAAATGCGGAATATTTTGAGACATGAGGAAGATGATCAAACGGGTGGAACAGCGGGACCCTGCCTTGAATACCTTTTACAGTACAAGATTTTGGATACTCTTCATACACTTGGACGTGCAGATTGTCCTCCTGGGATGAAACAACAAGTGTTGTTGTTCTTTGCGAACATACTGAGCAAGATGAAGCAGCCTCTGTTACCTCATGTTAATGTGTACAGACCGGTTCATAGACTAATTAGACTTTCTGGTGAAGTAAAAGCTGCTCCTTCTGAAAACGAAGAAATTCAATTTCTTTGTGTTGTCTGTGCAAAGCTAAGACAGGATCCATACTTGGTAAACTTTTTCCTAGAGTCCCTAGGTAACAGTCCAACAGGTCTTCATCCAGCAGAAGACTTCCATCCTCCACCAATTAAATCTGAAGGTCGTGACAAGCCAGACTATACTCTGGTGAATTCCCTACTCAACTTATCCAAGAGTGAGGATAGCAGAATAGCAGTTAAAGCGTGTGAAGGGCTGATGCTTTGTGCATCTCTTCCTGAAGATCATGCAGCCACTGTTATCATCCTGTATACTCCCTTTTGTGAAGTCATGGCAGACAGGTTGAAAGTTTTATTTGACCATTTACCCAAAAATATGGAGCCACTTGATATATCTGCTGTTGCTGCAAAATGGGGGCTTGATCATCAGAGCGACGATGAAGATGTTTTATCCTTCCCTGGCAAAAGGCGTTTAATCTCTTTTCTTTCTTGGTTGGATTATGTTGACCAATTGTCAAAGGAAGCACACAAGCTTGTTGGTAAGGCATTAGCAGTGGGAGTAAGAGAAAGATTTCTTCAGCCAGTTATGGAACCTGCTCTCATTCAACAATCAGAACTTGGTATCATTACAGCGACAGCAATCTTAAGAAGGTGTGTTAAGGCCGTCACTTCACCGCATCTGCTTCAAGAAATCTGTATATTTCTTCTTGGTGAAGAAACATCTCCGGAAGTTCCATCTAACACTGGAGACCACAAATTAAGACAAACACTTATTCAAAGATGTGATCACTTATCAGATGAGGTCAGCATAGAAACTTTGAAGTTGTTTGAGGCACTGCTTGACAAACCCTGTGAAATCATTTTTAATAATCTTGTTCTTCGGAACTTGAGGAGTAGGAAGTACTTTTGTGCTCCTGCACTTACTAATGGAGGTGCTGCAAGTAACGGACCCGTGACTGAAAATTTGTTAATGCCACCCTCCCCCTCCACTCCACCCTTGACACCAGATGGGTTGGAGTCACCCCAGATTATTGACGACGTTGATAGAGAAGAAGTGGAACAAGTTGTAAACAGTTTTATTTCACTGGTGCCTGATGAGATTAAAACCTCAGCTCTTACAGGAGATACTGGATATGACACCTATTTAAGAGATGCACACAAACAGTGCAGCCAACATTCCTTACAAACCAGCGGATTTGACTGGCCTAAATCTCCTATGCCAGTCAGCGATGTGGAAGACAACAGAGAGGCATTCTATGAAGGTGCATTTTTAAATATGTTATTCAAAAAGCTTCAAAGACTTTTGGATCAGCCATACGATGTAAACCTTCAAGTGACAAGTGTAATAGCACTGTTGTCTCAGTTTAATCATCCCCAGCTGCAAGAATATCTCCTCAATGCAACACTACCACTTGCCCAAGACTGTCGCACTCTTCATTCAACACTTCAAAATGTAGTACAAGATCTTAGAGGCCGAATACAAAGACTTCCAAACTTTCAACACCATGTTATTACTGTCAGAAGGCAATTAATGGGAGTGGCAACCACACCCGAACACAAGAGTCTGAGTGAAAGTAATCTTCTTGAAGCAGCCATAGTATTGGAAGAATTCTGCAAGGAATTGGCTGCTATTGCATTTGTAAAAGCTACTGAAAGAGTTCAAGGACGGTGA

Transcript

amic_s0182.g57.t1

CATCACGGTATTGGTTTGCCTGATCTGGTGATTTCTGTAGAAATATTTGCTTACATTCAGTCTAACATCTGTTGTTGTTTCTTATTCCTCTAATAGCACACAGCTTCCTTTCTTTTGGATATCTTCGAGCTGTTGCAGCTGTCCTTAGCTAAAAGCTGTAAGAAAGCGGATTTTTGCTCTTACCCCATTCTACGATAGTTACTCTGGACATTCCTTAGAAGGTGTGGATTCTGTACTTAGACCTATCAGGTTTCTGATGCCCATATTTCATTTAATATTTCCAGCTTTGAACAGTGTCACTGAATATTACCGCGAAGACGAGGAAAGGATTGAGTGGTGGAACGACTGTGAAGCGAGAGACCAAAGAGCCCGCATCGAGAAAACGTTTAAACACGGTCGATACTCCAGAGAGAGCCACACCTTAGGGTTCACCAATGGCAAATGGTACTGTTGTTTTAAACAAGCAGGCTTGAGGGCCAAAGGACAGCCTCTTGATGATGAGGAGACTGAGAAGCCCTTGAGGGCCAAAGCACAGCCTCTTGAAGATGAGGAGACTGAGACAACCTTGAGGGCAAAAGCACAGCCTCTTGATGATGAGGAGACTGAGACGCATTTGAAAGAATGTCTTTCAGCAGTACTAGAGATGTTCAATAAGATCAAGTCTTTCATTCATGAGGCTGTCGAAGCTCTTGCTCCTGATGTCCCTCCACAAGAGACATTCGTCTTCCATTGGAAAGCTATTACAAACTACTTCATCGAAGCTACAGATGAAAAAGTTCCAGTGCAGTCCACTAACATTCCATATCATCTGGAGCAAATGCGGAATATTTTGAGACATGAGGAAGATGATCAAACGGGTGGAACAGCGGGACCCTGCCTTGAATACCTTTTACAGTACAAGATTTTGGATACTCTTCATACACTTGGACGTGCAGATTGTCCTCCTGGGATGAAACAACAAGTGTTGTTGTTCTTTGCGAACATACTGAGCAAGATGAAGCAGCCTCTGTTACCTCATGTTAATGTGTACAGACCGGTTCATAGACTAATTAGACTTTCTGGTGAAGTAAAAGCTGCTCCTTCTGAAAACGAAGAAATTCAATTTCTTTGTGTTGTCTGTGCAAAGCTAAGACAGGATCCATACTTGGTAAACTTTTTCCTAGAGTCCCTAGGTAACAGTCCAACAGGTCTTCATCCAGCAGAAGACTTCCATCCTCCACCAATTAAATCTGAAGGTCGTGACAAGCCAGACTATACTCTGGTGAATTCCCTACTCAACTTATCCAAGAGTGAGGATAGCAGAATAGCAGTTAAAGCGTGTGAAGGGCTGATGCTTTGTGCATCTCTTCCTGAAGATCATGCAGCCACTGTTATCATCCTGTATACTCCCTTTTGTGAAGTCATGGCAGACAGGTTGAAAGTTTTATTTGACCATTTACCCAAAAATATGGAGCCACTTGATATATCTGCTGTTGCTGCAAAATGGGGGCTTGATCATCAGAGCGACGATGAAGATGTTTTATCCTTCCCTGGCAAAAGGCGTTTAATCTCTTTTCTTTCTTGGTTGGATTATGTTGACCAATTGTCAAAGGAAGCACACAAGCTTGTTGGTAAGGCATTAGCAGTGGGAGTAAGAGAAAGATTTCTTCAGCCAGTTATGGAACCTGCTCTCATTCAACAATCAGAACTTGGTATCATTACAGCGACAGCAATCTTAAGAAGGTGTGTTAAGGCCGTCACTTCACCGCATCTGCTTCAAGAAATCTGTATATTTCTTCTTGGTGAAGAAACATCTCCGGAAGTTCCATCTAACACTGGAGACCACAAATTAAGACAAACACTTATTCAAAGATGTGATCACTTATCAGATGAGGTCAGCATAGAAACTTTGAAGTTGTTTGAGGCACTGCTTGACAAACCCTGTGAAATCATTTTTAATAATCTTGTTCTTCGGAACTTGAGGAGTAGGAAGTACTTTTGTGCTCCTGCACTTACTAATGGAGGTGCTGCAAGTAACGGACCCGTGACTGAAAATTTGTTAATGCCACCCTCCCCCTCCACTCCACCCTTGACACCAGATGGGTTGGAGTCACCCCAGATTATTGACGACGTTGATAGAGAAGAAGTGGAACAAGTTGTAAACAGTTTTATTTCACTGGTGCCTGATGAGATTAAAACCTCAGCTCTTACAGGAGATACTGGATATGACACCTATTTAAGAGATGCACACAAACAGTGCAGCCAACATTCCTTACAAACCAGCGGATTTGACTGGCCTAAATCTCCTATGCCAGTCAGCGATGTGGAAGACAACAGAGAGGCATTCTATGAAGGTGCATTTTTAAATATGTTATTCAAAAAGCTTCAAAGACTTTTGGATCAGCCATACGATGTAAACCTTCAAGTGACAAGTGTAATAGCACTGTTGTCTCAGTTTAATCATCCCCAGCTGCAAGAATATCTCCTCAATGCAACACTACCACTTGCCCAAGACTGTCGCACTCTTCATTCAACACTTCAAAATGTAGTACAAGATCTTAGAGGCCGAATACAAAGACTTCCAAACTTTCAACACCATGTTATTACTGTCAGAAGGCAATTAATGGGAGTGGCAACCACACCCGAACACAAGAGTCTGAGTGAAAGTAATCTTCTTGAAGCAGCCATAGTATTGGAAGAATTCTGCAAGGAATTGGCTGCTATTGCATTTGTAAAAGCTACTGAAAGAGTTCAAGGACGGTGACATGAAACACTCCAATCAGTGGTGCGGCACGAGTTTCCTTCATGACTGAAAAGAGAATGTCTCACTGAGCGCTCTGTAGCATTCTAAAAGGAAGCTGTTCCTTTTTAAACATATATTTACAAATCACAACTCACTACTCGCAAATGTAATATATTTTTTTTGGCTTGTTGAATTTTTATGGGTATTTTAACAAGAGCTTATTGCACAGAACATTTTCAACCAATTTCAAACTTTCAGTTTGTCACAATTCTACTGCAGTTATTATTTTCCTCCCAAGCAATTATTGTTGTTTGAGTTAAAATTATCTTAACTTGTAATAAGTTTGTAACTTATTTTCAGACACCAAAAATTTAATCTGGTGTTTTCCTGCAACGTTTGACAATGAAAACATACAAATTGTGTAAGATATCCAACTGTTTTTCAGTTGAAAACGGTTTGAACTCAGGAGTGACACCTTGGTGAAGTTTGATAAACTGGGAGAGTGTAGTTGTTGGGTTATTGACATTGCGGTGACTTATGCCGAAGTCATCTTGAAGAGTCACTTGATTGTACAGAATACTTCCATATAGATTCTATCAAAGTATGTTTTTCAGTTGTTTAATTAACACAAAGCAAGATTCAAATTGCTTTGAATAGAATATTGGTAGGTGAAAGTTCAAATAAATTACAATAATTATTATATTATTAATGAATGAAAAAGGGTTTAGCCATATCATATAAAACATAAATAATATTGTTGATGGCTAAAGATCCCTCCATAGGAATGCATTTTCTTTGGAAGTTTTCTCATCAATGGAACTAAGGCCATCATCCTGACAGAGAATCTCAAAAACACTAATGGGAGAGTAAAGTCAGTAAAATGTTGGAAGCCAAAGAGATCAAGACATTGCATATAGTACCAAGTTCCAACTTTCTTTGCTCGGTTAAAAGTTCCCAAGCTTTTAATAACAATGATAGTATCGCTTTCATGGAGATGAAGTTTAAGGCTTTTCCATAGTCATTGATGTGGAAGGGTCCAAACTTAGAGGTATTTGCAATAAACAACTGAAAGGAAAGTTTTTTTAACTGGTGAGTGTCATCATCTATAACGCTTGTCTTACTTTAAAAGCAAACAAACAAACATTACAGGCAATCAATTGTTATTTGAGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CDM8	FHF complex subunit HOOK interacting protein 2A OS=Mus musculus OX=10090 GN=Fhip2a PE=1 SV=2
A0JPG1	FHF complex subunit HOOK interacting protein 2A OS=Xenopus laevis OX=8355 GN=fhip2a PE=2 SV=1
A0JNG7	FHF complex subunit HOOK interacting protein 2A OS=Bos taurus OX=9913 GN=FHIP2A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003421 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10257 all species →	RAI16-like	Retinoic acid induced 16-like protein	Repeat	Interproscan
PF19311 all species →	KELAA	KELAA motif	Motif	Interproscan
PF19314 all species →	DUF5917	Family of unknown function (DUF5917)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR019384 all species →	Family	FHF complex subunit HOOK interacting protein	Interproscan
IPR045668 all species →	Conserved_site	FHF complex subunit HOOK-interacting protein, KELAA motif	Interproscan
IPR045669 all species →	Domain	FHF complex subunit HOOK-interacting protein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21705 all species →	RAI16 PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0182.g57.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26421	FHIP2, FAM160B; FHF complex subunit HOOK interacting protein 2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.