Detailed information of amic_s0182.g7.t1 in Acropora microphthalma

Genomic Location: sc0000182_pilon:63486...84815
NR annotation: XP_029200486.2, pre-mRNA-processing factor 40 homolog B-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9R1C7Pre-mRNA-processing factor 40 homolog A OS=Mus musculus OX=10090 GN=Prpf40a PE=1 SV=1
O75400Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens OX=9606 GN=PRPF40A PE=1 SV=2
Q80W14Pre-mRNA-processing factor 40 homolog B OS=Mus musculus OX=10090 GN=Prpf40b PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004797 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00397
all species →		WWWW domainDomainInterproscan
PF01846
all species →		FFFF domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002713
all species →		DomainFF domainInterproscan
IPR036517
all species →		Homologous_superfamilyFF domain superfamilyInterproscan
IPR001202
all species →		DomainWW domainInterproscan
IPR039726
all species →		FamilyPre-mRNA-processing factor Prp40Interproscan
IPR036020
all species →		Homologous_superfamilyWW domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11864
all species →		PRE-MRNA-PROCESSING PROTEIN PRP40Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005685
all species →		Cellular ComponentU1 snRNPInterproscan
GO:0045292
all species →		Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071004
all species →		Cellular ComponentU2-type prespliceosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0182.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP