Gene detail

Detailed information of amic_s0185.g9.t1 in Acropora microphthalma

Genomic Location: sc0000185_pilon:142856...165171
NR annotation: XP_029183049.2, rap1 GTPase-activating protein 1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

amic_s0185.g9.t1

ATGAGAGATCTTGACCCTGTTAAAGAGGTTTTAGCTGCTGGTGGACCCTATCCTCTAGTTGTTTTGCCAGTTGGTGGTGAATACAGACTTGAGGGAAGCAATCATCAAGGCATCAATGTCTCTGACTTAAGATCAATTGACTGCAAGATTGAAACAAATAACATTATTCAGAGTTACCGGAGGGATTTCATGGGAAAGGAGCATCTTAATTTCATTTCGGATGATGAGAAATTTCCAATAATCTTGTCTGTAAAGCAGGAAATAGAGAAATTGGACGGCTGTGACACACAAGGCTTCATTAAAGTAATTCTCAGAACAACAGAAAAAACCATTGCAGATTCACTACCCATAGAAAATCTATCTGATAATCCAGGGCCTCGTGAGATAGTCAAGTATCTTCTTGGAGATGATGGAGAAAATATGGATCAGTTCCAGGTTTTGGCTCACCCTAAGGCATCAGAACTGATTGTCAAGTATGATGAACACAATTTATCCCATGCCTTCAAGTTTGGAGTGATTTACCAGAAGTATGGACAGACAACAGAGGAAGAATATTTCTGTAATAGAACTCACAGTGCTGCCATGACAGAGTTCCTTGAGTTACTTGGTAACCAAGTCAACCTGAAGAACTTTAAAGGGTTTCATGGAGGCTTGGATGTGAAGCATGGACAGACAGGAGAAACATCAATTCACACAGTGCTTGATTCAAAGGAGATAATGTTTCATGTATCTACACTCCTGCCATTCAGCAGTGGGGATAACCAGCAGGTGCAAAGAAAGAGGCACATTGGAAATGACATAGTTGCAATTGTTTTCCAGGATGAAAACACCCCCTTTTCTCCTGTCTCTATCCGGTCACATTTCTTACATGTGTTCATTGTGGTGCAAGTTGAAGAGCCAAACTCAAGCAATACACGATACAAGGTGTCAGTCACTGCCCGTGAAGATGTTCCCCAATTTGGTCCCAAGCTTCCAAATCTTGCTGTGTTTAAAAAGGGCCCCGAATTTCGAAAATTCCTTTTGACAAAACTTATCAATGCAGAACTTGCAGCTTACAACAGCGCCGAATTCGCCAAACTAGCAGATCGCACCCGCTCCACTTTGTTGGGCGGATTGGCCAAGGATTTGATTGAAAAGAATGCTCTGATATTTGACGCAGGTGGAGAGGAGGTTCCGCAAAGGGAGCGCAAGATTTTCCCTTCATTCCGGAAGGTGTGGCGCGGCAGGAGTCCAGTGAGTCGAACCCAGTCCATGAGAGAATCTCACTCGACAACTGATGACGTAGACTCGGATGACAGCCTACCAAAAACCTGGGCGCGAAAGGCAAAAGAAAGACGAAAGTCTGTGCAAAGTTTACTGGCAGCCAAGAAAATATCCAAAGCACCGAAAAAAGAAACAGCTGGCCGATGTAAGAGTATGGAGTCTCTTGTGATCCAAGAACAGAGTAAGAACAATGCAATATTTCACACAGAAGATTCTGGTTCAGAGTCCAACACGTCTGAAATGTCCAGACATCGTGACGAGGATTCTACTTATTTCAGTACACAATACACACGCTCCCAGACTCCGGAGCCAAAAAAAGAGAAATTTATCTCAGAATTTACGTCCTCACCTCTCACATCTCCGCGCTTTCAAAAACCAGTGGCTCATTCGCCATCGATGTCACAATTGCAAGTTCAAGATCCTTTGTTTAGGACACCAAGTGAAGACCAGGACAAATCCTCACCCTCTCGTGTTTCTTACGAGGGCAGTTCGTCTATAGAATATCAAGTTCGGTATGTTGGAGGGTACCGCTCTGGTCCCGAAGACGATTCTGAGGAGCCAATTAAACTCGTGCCTTACTATAGGTCTCCGACACGTCACCGAAAAGTTGATGAATCGCTCGAAGGTACGGAAGGACGTCGACGTATTAATCAGCTGGACTCAACTTTACATCAGTATACTGTGACTTGTTCGCAATCGTCATATCAATCTAGGGATGGAGGGGTGGACATATCACAAAGCTATAACAGATCACCCTCAAGCTCGCCATATCACCACAGAAAAGCGATTGATCCCCAGAACTCTATTAATAACGCCCATTCTGTGGGATTAAGCCCAGTTTCTGTGCAAAAGCAAAAGAAGACGGCCATCGTTTCGCCGCTTCTAGACATGTCGGAGTCCAGGCCTCGCTCAGTCCCACCAGGAGTTTTGATGTTTGATCCAACTGACCCTGAGTCTGAACGAGTCGAGGAGGTGTTGCATGAAAGGTCACCTTCTCTTCCTAAACTCGATGGCGAAAGTGTCTTGCCACCTGAGGATTTACCATCCTCTGACTCGTTTTCAAGAGAAATCGAAAAGTTCCAGAACGAGATTTCTAAGCTGAAATGCGAGAAGCTTGATCTTAACAGGCAAAATCTGTTACTGCAGCGGGAAAACCGTGCGATAAAGGACAAAGCCATGCAACAGACCGCTGACCTATATGAGGCACGATGTGAAATAGCGCGCCTGAAGTCTCTTTTACCGAGTGAAAATGTGCACCTGAGGGACTCCTCCAGCATAGAAACAGTCACACTGCGGCAAGGGAGTTTCCCGTCTCCTAAGGGAGGCCTAGCGGGAAGAGATGCAGCGACAGGAGTGTATAAAGGAGAAAGAGAGGAACTAACAGATGTCTCTTCAAGGTCTTCCTATCGACACACGAGGCTCTGA

Transcript

amic_s0185.g9.t1

CAGTCAATCAACATTCGTGATAAGCGTAACTTGCGCGAGGAATGAGTTCGGCATATTGTACGTAACCAGGGAAATTTCAAAACAAGATATATACACATGCTCAATTACTTGTTTAAAAATAAAAGCCGAGTAATTCGAAGCGTGCAGAAGTCCATGTTGTGATAAAATCCAATCAAACCTTAGGTCTTCTTGTCAAACAGCTGAAGGGTCCATCAGAGCGCGGTGATTAAAGTAGTTACTTTCCTCACATCAGCATCTACGGTGACCAATACATACGTTGAGTGGCGCTATAACAATACATTGAGCGACACACTGAGCAAGGTGACTCGACGTTTAAGAACTACTTATCATCAAGTGAAACTCCAATAACAAGGCGAGGTCGGAAACCTACAATAGAAGAGCCTACCAGACGCTGTGGAATATACAAACCCACTGGATATAACAGGATTCCAAGAAGCTGTTCCATTCAGTAAAGGGCGAAGTAACAAAACCTCTGCCAATTGCAGTCGGGCACGACTGAGTGGAAAAGACTCTTTCAATCTACTGCAGTTCCTATCATTTCTTCGCTCAAGTAAAGTACTATTAGCCATCGAGTTTGGTTAATTATCCTGTCAGGCCATTCACTTGCTCTGTCCGCTTCAGGTACTTTTTACAGCAAATATTTTTGTCATACATAGTTATTATTATTTGGAACGTTAGAAAAGGGACTCGACAAAAATTGTGTTTGTCGCAGTTAAATCCAACATTTACTTGCTCACATAGCGGACAAAAATATATAAAAAAAAAATATGCAACTCAACCCAACCACCACAAAAACCATGGTCGAAACTTGAATCGTGATTTGAACCTTGGATCGAAATTGAAGTATGCCGCTGACTTTAAAATTAGGACTGAAATTTAACTAATAATCAGGCCCGAGTTCCTCGAGTCAATGGTTAGCACTAACCATGCTGCGCTGAGAAACTGGCCCCACATTGATAATGGATAACCATAATGATAGAAGCCTGCCAGCCGTCTGTGGCACGTGCTGTCAGAAGTATGCACTCTTTCATTCAATATGTGCAGTTGTCTTGCATTGCTGACAGCAGAGTTAACTCTGCTGACAGTTATCTTCAGAAATTTCTATAAGAGAAAGTGAAGCTTTGAATCCAAGTGCGCAATACAATATGCTCGAACGGGTTTGTAGTCATTTGAAAAATAACGAAACCGCAGGCAGCTAAAAGGCGTATAAGTAAGCGCGAAAAGAGAAAATGTAAATCGCTTGACCCGTAGGCCCGTAGGGACATAATGATTTGCATTGAAACGGAAACAATAGAAAGCAACGCAAGAATGTTACAGAGGCGTGGTTGTATTTAAAAGAGTTGAGTAGGCAAATTTTTGTCTGCTTGCTTCAAGGGAAACTATTGAAACCCACTGTTGCGTTGATTTTTCCAAGAACGTCAAAGGAGTTTGTATTATCGATCTGTATCCTTGAATTACGTCGCCTGAATTTCATGAATTTCTATCCTTGAATCCTTATCCTTACATATAAACTTAACTGGTCGACCTGACTTTTAATCGAACCACCCTTCCTTTGATAACTGAAGAAGGGTTCTTGCATTCTTGAAAAATTTAATAATACCAGGTCGCTATCAAGCTCCACGAAAATTAGGGAAGAGAATAGAAACTTTTGAAAGAATAGAAAGTTCAGCAAGGCGGAAGAAAAGGCAACCTTCTCGCGGTTTTCTAATACTAATGAAGCTACGGCAAGATTGAAAGAACAGTTTTCTGTTGGTGTCACGTAACCCCAGAAACAAGCATCTGCCAATCCGTTGTCTATCAGCGTGTTGCACTGATGTTCTTGACTTGGTCAGTACTCCGCGTTACTTCGAATTTAAAAAAGAAATTATGTTACAAGCACGCAATAAATCTGAATAGTGTTAAGAACTGCGTTTGTGAATTCATCAAAAAGCAAAAATCTTCGTTGAAATTAGACACGAAGGAAACCTGGTCCCGCGGTGCCTAGCCAATACAGGGCAAGGCTATGAAACAACAGTCTCTTCACATCCCCTCTGTGTGTGCTGTTTGCAGGTTTATCCTCTATCAGGGACTATGCGGCCAATTGAGGCCGGAATGGCAATGAAAGATCAAAAGGACTTACTTGATATTATAGGAAAAGCTCAGTCTAATCGCCTCGATGAGCAAAGAGTAGAGTTACCCAGTTCATTACGGAGTTCTTGCAGCGTACCATCCTTGCTAATAAGGACAACCTATATAGAAAACCAGGAAGCTGAAGAGAGTGATAATTCAGAAAGAGAAGACACCGAAGTTGAACAAGACGAAGAAGAAATAATGAGAGATCTTGACCCTGTTAAAGAGGTTTTAGCTGCTGGTGGACCCTATCCTCTAGTTGTTTTGCCAGTTGGTGGTGAATACAGACTTGAGGGAAGCAATCATCAAGGCATCAATGTCTCTGACTTAAGATCAATTGACTGCAAGATTGAAACAAATAACATTATTCAGAGTTACCGGAGGGATTTCATGGGAAAGGAGCATCTTAATTTCATTTCGGATGATGAGAAATTTCCAATAATCTTGTCTGTAAAGCAGGAAATAGAGAAATTGGACGGCTGTGACACACAAGGCTTCATTAAAGTAATTCTCAGAACAACAGAAAAAACCATTGCAGATTCACTACCCATAGAAAATCTATCTGATAATCCAGGGCCTCGTGAGATAGTCAAGTATCTTCTTGGAGATGATGGAGAAAATATGGATCAGTTCCAGGTTTTGGCTCACCCTAAGGCATCAGAACTGATTGTCAAGTATGATGAACACAATTTATCCCATGCCTTCAAGTTTGGAGTGATTTACCAGAAGTATGGACAGACAACAGAGGAAGAATATTTCTGTAATAGAACTCACAGTGCTGCCATGACAGAGTTCCTTGAGTTACTTGGTAACCAAGTCAACCTGAAGAACTTTAAAGGGTTTCATGGAGGCTTGGATGTGAAGCATGGACAGACAGGAGAAACATCAATTCACACAGTGCTTGATTCAAAGGAGATAATGTTTCATGTATCTACACTCCTGCCATTCAGCAGTGGGGATAACCAGCAGGTGCAAAGAAAGAGGCACATTGGAAATGACATAGTTGCAATTGTTTTCCAGGATGAAAACACCCCCTTTTCTCCTGTCTCTATCCGGTCACATTTCTTACATGTGTTCATTGTGGTGCAAGTTGAAGAGCCAAACTCAAGCAATACACGATACAAGGTGTCAGTCACTGCCCGTGAAGATGTTCCCCAATTTGGTCCCAAGCTTCCAAATCTTGCTGTGTTTAAAAAGGGCCCCGAATTTCGAAAATTCCTTTTGACAAAACTTATCAATGCAGAACTTGCAGCTTACAACAGCGCCGAATTCGCCAAACTAGCAGATCGCACCCGCTCCACTTTGTTGGGCGGATTGGCCAAGGATTTGATTGAAAAGAATGCTCTGATATTTGACGCAGGTGGAGAGGAGGTTCCGCAAAGGGAGCGCAAGATTTTCCCTTCATTCCGGAAGGTGTGGCGCGGCAGGAGTCCAGTGAGTCGAACCCAGTCCATGAGAGAATCTCACTCGACAACTGATGACGTAGACTCGGATGACAGCCTACCAAAAACCTGGGCGCGAAAGGCAAAAGAAAGACGAAAGTCTGTGCAAAGTTTACTGGCAGCCAAGAAAATATCCAAAGCACCGAAAAAAGAAACAGCTGGCCGATGTAAGAGTATGGAGTCTCTTGTGATCCAAGAACAGAGTAAGAACAATGCAATATTTCACACAGAAGATTCTGGTTCAGAGTCCAACACGTCTGAAATGTCCAGACATCGTGACGAGGATTCTACTTATTTCAGTACACAATACACACGCTCCCAGACTCCGGAGCCAAAAAAAGAGAAATTTATCTCAGAATTTACGTCCTCACCTCTCACATCTCCGCGCTTTCAAAAACCAGTGGCTCATTCGCCATCGATGTCACAATTGCAAGTTCAAGATCCTTTGTTTAGGACACCAAGTGAAGACCAGGACAAATCCTCACCCTCTCGTGTTTCTTACGAGGGCAGTTCGTCTATAGAATATCAAGTTCGGTATGTTGGAGGGTACCGCTCTGGTCCCGAAGACGATTCTGAGGAGCCAATTAAACTCGTGCCTTACTATAGGTCTCCGACACGTCACCGAAAAGTTGATGAATCGCTCGAAGGTACGGAAGGACGTCGACGTATTAATCAGCTGGACTCAACTTTACATCAGTATACTGTGACTTGTTCGCAATCGTCATATCAATCTAGGGATGGAGGGGTGGACATATCACAAAGCTATAACAGATCACCCTCAAGCTCGCCATATCACCACAGAAAAGCGATTGATCCCCAGAACTCTATTAATAACGCCCATTCTGTGGGATTAAGCCCAGTTTCTGTGCAAAAGCAAAAGAAGACGGCCATCGTTTCGCCGCTTCTAGACATGTCGGAGTCCAGGCCTCGCTCAGTCCCACCAGGAGTTTTGATGTTTGATCCAACTGACCCTGAGTCTGAACGAGTCGAGGAGGTGTTGCATGAAAGGTCACCTTCTCTTCCTAAACTCGATGGCGAAAGTGTCTTGCCACCTGAGGATTTACCATCCTCTGACTCGTTTTCAAGAGAAATCGAAAAGTTCCAGAACGAGATTTCTAAGCTGAAATGCGAGAAGCTTGATCTTAACAGGCAAAATCTGTTACTGCAGCGGGAAAACCGTGCGATAAAGGACAAAGCCATGCAACAGACCGCTGACCTATATGAGGCACGATGTGAAATAGCGCGCCTGAAGTCTCTTTTACCGAGTGAAAATGTGCACCTGAGGGACTCCTCCAGCATAGAAACAGTCACACTGCGGCAAGGGAGTTTCCCGTCTCCTAAGGGAGGCCTAGCGGGAAGAGATGCAGCGACAGGAGTGTATAAAGGAGAAAGAGAGGAACTAACAGATGTCTCTTCAAGGTCTTCCTATCGACACACGAGGCTCTGAAAAAAAGACACCACAGCATAATACCGTCCAGAATATTCTGTCGCATTTTTAAAACCCATAGAAAAAAAAATATGATAGATTCTATATGCTTATCGACGTTCAGATGAAATTGCTGTTTGTTAAGGTAGAATGCGCATGATATTACGTATATTCCCTTTGTTCCTTTTGTGTTTCTTTCTTTTGATGTAATGAAACGTTTAATTCTTCGAAGCTCGAAAAACTAGTGAAGGCGTATTGTAGGTTTATTGTATACTAAAAAACTGACGTATTTCTCAATGGAGTCTGCTCTTCTCCATTTGAATGATACCGAAATTTTCTGTAACACGAGAAAGAACTTATCAAAATTTTATAACCATACTAGACTCATTTTTATGCCTGCTGAAATTCCTGTTTACGGAAAGTGGTATTTTTATAGAGAATTATTTGTCGCCTCAGGATACACTTTGTAAGAATTACAGTGGAATAATATTTCTATTTTTCTGCACTAATGAAAGTCCTTTGAGCTATTGCAGGTTCAACAGGTGTCCTAATACATAATGCCCATATTGAGGCATGGAAGAAGACTAAAGAGGAATTAATAAATATTGCTCAGCAAATGTCAGCCTTGAAGTAGTCCCATATTTTCCATTTAACTGTGCATTGATTCGGGTTGCCGCATTTGCAGTTCCCTGTATGAGCTGTGTTTCAGTCAGTCTTTATGTTCTTACGCTATGTTGACAAATGCTGAGCGGCAGCAAAGTAGAACTTCTGATATATGTGTATGGTGTTTTGGGAGACAGCGTTTGAAATAAAGCACTTTTATGTTC

Protein

Uniprot

Uniprot term	Description
P47736	Rap1 GTPase-activating protein 1 OS=Homo sapiens OX=9606 GN=RAP1GAP PE=1 SV=2
A2ALS5	Rap1 GTPase-activating protein 1 OS=Mus musculus OX=10090 GN=Rap1gap PE=1 SV=2
Q5ZMV8	Rap1 GTPase-activating protein 2 OS=Gallus gallus OX=9031 GN=RAP1GAP2 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21022	Rap-GAP_dimer	Rap/Ran-GAP protein dimerization domain	Domain	Interproscan
PF02145	Rap_GAP	Rap/ran-GAP	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050989	Family	Rap1/Ran GTPase-activating	Interproscan
IPR000331	Domain	Rap/Ran-GAP domain	Interproscan
IPR035974	Homologous_superfamily	Rap/Ran-GAP superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15711	RAP GTPASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0090630	Biological Process	activation of GTPase activity	Interproscan
GO:0051056	Biological Process	regulation of small GTPase mediated signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17700	RAP1GAP, RAPGAP; RAP1 GTPase activating protein 1	-	Rap1 signaling pathway	ko04015	deepkoala