Genomic Location: sc0000186_pilon:734775...803463
NR annotation: XP_044162822.1, Fanconi anemia group M protein homolog [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families
| CDS |
| amic_s0186.g42.t3 |
| Transcript |
| amic_s0186.g42.t3 |
| Protein |
| amic_s0186.g42.t3 |
| UniProt accession | Description |
|---|---|
| Q8IYD8 | Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2 |
| Q8BGE5 | Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3 |
| A0A1D5PRR9 | Fanconi anemia group M protein OS=Gallus gallus OX=9031 GN=FANCM PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003364 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00271 all species → | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF16783 all species → | FANCM-MHF_bd | FANCM to MHF binding domain | Domain | Interproscan |
| PF15020 all species → | CATSPERD | Cation channel sperm-associated protein subunit delta | Family | Interproscan |
| PF00270 all species → | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| PF02732 all species → | ERCC4 | ERCC4 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001650 all species → | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR031879 all species → | Domain | Fanconi anemia group M protein, MHF binding domain | Interproscan |
| IPR006166 all species → | Domain | ERCC4 domain | Interproscan |
| IPR044749 all species → | Domain | FANCM, DEAH-box helicase domain | Interproscan |
| IPR039686 all species → | Domain | FANCM/Mph1-like, insert domain | Interproscan |
| IPR010994 all species → | Homologous_superfamily | RuvA domain 2-like | Interproscan |
| IPR047418 all species → | Domain | Fanconi anemia group M protein, XPF-like nuclease domain | Interproscan |
| IPR028751 all species → | Family | Cation channel sperm-associated auxiliary subunit delta/epsilon | Interproscan |
| IPR014001 all species → | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR011545 all species → | Domain | DEAD/DEAH box helicase domain | Interproscan |
| IPR011335 all species → | Homologous_superfamily | Restriction endonuclease type II-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14025 all species → | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000400 all species → | Molecular Function | four-way junction DNA binding | Interproscan |
| GO:0009378 all species → | Molecular Function | four-way junction helicase activity | Interproscan |
| GO:0036297 all species → | Biological Process | interstrand cross-link repair | Interproscan |
| GO:0043138 all species → | Molecular Function | 3'-5' DNA helicase activity | Interproscan |
| GO:0045003 all species → | Biological Process | double-strand break repair via synthesis-dependent strand annealing | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0004518 all species → | Molecular Function | nuclease activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0036128 all species → | Cellular Component | CatSper complex | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
amic_s0186.g42.t3.Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
