Gene detail

Detailed information of amic_s0188.g5.t1 in Acropora microphthalma

Genomic Location: sc0000188_pilon:197622...208115
NR annotation: XP_015752016.1, PREDICTED: signal recognition particle subunit SRP68-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0188.g5.t1

CGAACACGGTGACAAAGTATTAGACGAAATGGAAACCAACACGAGCGATATTTCAAAGGAACTTGAACAACAGAAAACTGTCTTAACACTGGAAATCCTTCCAGTCATTAAAGACGCCCAAGGACAGCATGGACTTCGGCATGGAGATTACCAAAGATACCGCCAATACTGTCAGAGAAGATTGAGAAGGTTGTACAAGACAATGCATTTCCAGCATGGATCTCGACATGCATTTAAAGCAAAGAAGGTGTCCCAAGACTTGCTCAAAGATGTCAGGTATTTACACATTCCTCTTATGGATGCTGAGAGAGCGTGGAGTCATGCTATGGAGCTCAAACTTTTGGCCAACACAGAATTGCGCAAAAAGTTTCATTATATCAGGAGACTACGCAAGGCTGCAAACCATGCAGACCAACTGCAAGGGTTATGTGATGGTGAAGCATGTGATGCAAGGACTAAATTGGAGTCCCAGGCATATGCATCGTTCATGAAAGGTAGTGTTAGCTTTGAGTTGCAGAACTGGAAGGAAGCTCTTGAATTGTTCCGCCAGGCAAAGACAATCTATGAGAATTTGGCTGGTGCATTTTCAGAGGAGCAGGGTGCTATGTATCTTCAGCGGGTCGAGGAGATCACACCCAATATAAGCTACTGTGCTTACAATCTTAAAGAGGGATCAACTGATATTAATGATCTGATGCAACTGCGTTTGAGTGCTACAGCCACTGGAGGGACACATGATCCTGTTCTAACAGCCAAGATAGATGAAGTGATTGCTCAAACTCGTGATAAAGAAGCTGCCAGCATGACAGAAGTGACTTGGCGTGGTCGCACTGTACCAGTGAAAAATGAGAAAGTACGCTCATTCATATTACACTCACAACAAAGTGCAAGAGAGTTGGATAGGGCTGATACACTTGACAGCAAGTTGAGTTTGTATGATAGTCTGCTGATGGAGTGTAAAGATGCTCTGCAAGCAGTCAAAGATGAGTTGAAGGGGGATACGGGATCAGGAAAGTTACGTTCCCTAAAGACAGAGACACAAATTGGAAACCTGCAATTTCTTCATGTGTACATCACATACATTCGGTTGAGCAAAACTGTGGAGAGAAACTTACTTATGGCTGAATCTATGAAAAGCAACTTGCCGACCCTTCTTCAGAAATCCTCTGAGGAATGTATTGTAGAACCAGGCCCTGTGGGCAAAAAGATATCCAAACCTGAAGACCTTGTGCGAATTTATGATACAGTTTTGCAGAACCTGTCTGATATAGCTGAATTACCAGGAATTGACGAAGACTTGAATTTCTCCAAGGAGATTGCGGCTAAATTGTTGCAATGCAAAGCCCAAAGATGCCTTTTTGTGGCTCATTCATACCTGCTTGCCAAGAAGTGGCGCGAGGCCGTATCTTTGTATACACGTGTACTCAGTCACGCCAATTCTGCTGTTGCACATTTTCAGGACATGAACCCTCACCAAAATCAGGTAATTAGCAGTCTGCAGGAGCTGATATCTCAGACAAGAGGGTTCAAATGCTCTGCTTATGCTTCATCTTTATTGGAGAGAGAAATCGTTACAGATGAAATGGCTGGCATGTCTTTGAATGAGAAGCCTCTGTGTGCCCGTTTGGATCATTACATGTCTGATCCCTCTTTAACAAGCAAGAAACCTCATGTGACTGCCTTTCCACCTGATTTTAAACCTGTTCCTTGCAAGCCTCTTTACTTTGATTTAGCTTTGAATCAGATTCAGTTTCCATCCCTGGCTCACAGGTTGGAAGAGAAGAAAGTGGCTGGTTTGGCTGGTTACTTCAAAGGATGGCTATGGGGATCTGGCAGCTAAAAATGCTAATGACAACATTATTATGATCTTGATTTCCCAGAATAATGGAATGCTTTTGTTTGTTGCAATGCAGCAGTCCCTCAATTTTAACTCAATTTTTCTGGTTTCTTGGTTCAGAATTAAAATTACGATACTGTTTTGTTTTGTAGTCAGTCTTACGTGTTGTTACTTCTGTAACCAAGATGTAGGTAAACTAAAGCTGGTGGCAATGAATGTTACAAAATGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q00004	Signal recognition particle subunit SRP68 OS=Canis lupus familiaris OX=9615 GN=SRP68 PE=1 SV=1
Q8BMA6	Signal recognition particle subunit SRP68 OS=Mus musculus OX=10090 GN=Srp68 PE=1 SV=2
Q9UHB9	Signal recognition particle subunit SRP68 OS=Homo sapiens OX=9606 GN=SRP68 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006731 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16969 all species →	SRP68	RNA-binding signal recognition particle 68	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026258 all species →	Family	Signal recognition particle subunit SRP68	Interproscan
IPR034652 all species →	Domain	Signal recognition particle subunit SRP68, RNA-binding domain	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR038253 all species →	Homologous_superfamily	SRP68, N-terminal domain superfamily	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12860 all species →	SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005047 all species →	Molecular Function	signal recognition particle binding	Interproscan
GO:0005786 all species →	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312 all species →	Molecular Function	7S RNA binding	Interproscan
GO:0030942 all species →	Molecular Function	endoplasmic reticulum signal peptide binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03107	SRP68; signal recognition particle subunit SRP68	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.