Gene detail

Detailed information of amic_s0189.g5.t1 in Acropora microphthalma

Genomic Location: sc0000189_pilon:91356...94402
NR annotation: XP_029211848.2, 5' exonuclease Apollo-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0189.g5.t1

ATGAACGGAGCTGTAATTCCAAACACTCCAATCGCTGTTGACTTCTGGAGAGTGAGAAGATGTCCACACTCGAGGATTTTCTTTCTATCTCACATGCACGCTGATCACACTGCTGGCCTCACGTCTTCGTGGAATTCCCACACCATCTACTGCTCAGTAATCACAAAGAAGCTTTTAACGGCCAAACTTCACGTCAGAAGCGAACTTGTTGTTGGCCTACCGCTCTATGAACCTGTGACAATAAATTTAGATGAAGTTGGGAGAGAAACAATGACCGTGACACTTGTAGATGCCAACCATTGCCCCGGATCTGTCATGTTTATTTTCGAGGGATACTTTGGAAGAATCCTTTACACCGGGGATTTTCGTTTCTGCGATCGACTCTTAAAGTACTCTGCTATTAAGGGAAAGCAATTTGACATCCTGTACCTTGATAACACGTATTGTCATCCAAAGTGTTTTTTTCCTACACGTTCTAATGCTACAACTACCGTAGTGGAAATCATTCGAAATCATCCTCAGCACACTGTTGTCATTGGCCTTCATTCTTTGGGCAAAGAAACTCTGTTGTATGATATTGCAGTTGCATGTAAATGTTGGATTGGAATGGACCCCTCAAGAAGCGAGACGATGGAACTGGTTGGAATGCCACAAGTGTTTACTTGTGATGTGGACAGCACAAGAATTCGTGTGGTTAGTTTTCAGGAAGTCAACAAGAGAAACATAGATCTTTGGAACTCAAAAGAACCAACAATTGCAATACTACCAACTTGCCTCTATGTGGGCGGAAGCAATCCATACGAGAATGTGCCAAATGTTTTTGTCGTTCCATACTCTGATCATTCTTCTTTTGAAGAATTGAAGGCGTTTGTGTCAGATATCAGGCCTCGTAAGATTATACCAATAGTTCACAAACACAGACTTTCAGCAGATGAAAATCCTAACAGTAGAGTAAACATGAACATTTTCCAGTCCCTAATGGAACCTTCACCATTGCAAAAGTTCATTGTACCCCCTTCTGTGGAATGTTTCATGGCTCCAGAAATGAAACAAGACGTAAAGAAAAGGATGAAAGCAACAACTAAACTTGGGATTAGAAAAGTTGCCAAAAGCAGAAAGGCATGTGGGGTTGTTTTCCTTCCCAGTCAAGAAGAGTGCGAGGAACGGAAGTTCTGTGGTAGGGCCAATGGCGATTTAGAAGGTAAAGAAAACACAGATAGTGAAAGAGGTGATTGTGTGGCTAAAGAGATAGATATTCAGGAAAGGCATGATAGCATGTTTTCCCTTATGAAGAATGACAGGGAGTCAGGATATGGGTTTCTTGTTGATAACAAAGGTGTGGCCATTAATGACAACTCAGGGGATAAAGTTGGATCAGTGTACTTCATTTTGAAAGAAGGGTTTGAGGTAAATGAGAACATCCGTGAGTTTTCAAATGAACAAATGTTAGAGGAATCTAACATTAGGGAGAGTTCCCTTGCACGTTTTTGTTTCAAACAAGTTGATGGTTCCAGAGAGAAAGAGGGTGATAGAATTGACAAAGATGAAGAAATATTAAATGAAATTAGTAGTGAGTGTACTACATTTGCTGATTTGAAAGGTGTTTGTTCAGGGACGAAAAGAATAGAGAATGATATTGCTGGCATTGAGGACACTCATGATGATGGATACGTAGTTGGTTCTTCATTAGTGCAAAGGGGTCATGCAGAAAAGAGAAGGAGGATAGATGAAGAAGGCACAGATTGCAAAGATGCTACTAAGGCTGAAGAATTAAGGAGTACAGAAACATCATTAATCAAGCAAAGCAGCTTTGTGATGGATGAGGAAATCAAAGAATGCCACAATGACTTTGTTAGTGGAGCTGAGGAAAACAAGGAAAACAATGGAAGGTGTGCGTTTGCATCTCCTTCTGTCAGAAATACAAGTGGTTTTAGCGAAAACGAGAAGAATGTTGTCAAACCAGAGGAGACCAACATATTTTCTTCGATGAGAACAGACAGCTGTTCCAGTAAGAAAAGAAGGGTTGGAGACCAAGATGGTGTTGAAAAGGTCGAGACTGACAATGCCCAGGAAGAACACAAAGTGGATTCTTCCCCAATGCAGGGGGATCATGTTAGAAAGAGAGCAAAGATGGACAATGGTGACAAAGATATCACCATTGTAGGGGACAGTGATGGCGAAGGGAACAAACACTCTGATTTAGATGACCAAGTGGATGATTTTGGATGTGACAATGGGACCTCTGATGATGAGTTGTTTGCGGTAGCGTCCTGCTATCAAAGAGATTACACCTCACGCGTCTGTCAACAAGATGAAAGGGTTACGTCAATCGAGAAATCTTTCACTGATAACCAAGGCAGTAAAAAGAAAGGATTTAATATGTACACCGGCCAAACATGTGATTTTGCAAGGAAAGTCTTGAAAGATATGGTTAGGAATGGATCCCTGTGA

Transcript

amic_s0189.g5.t1

GCGGGAATGAAACGAAAGTGGCGGCAACCTCACTGTTTGTGTTACGTTATTTTCGCATTTCTCTGAGATTCTTCTCGACTGAAACGAATCTACAATGAACGGAGCTGTAATTCCAAACACTCCAATCGCTGTTGACTTCTGGAGAGTGAGAAGATGTCCACACTCGAGGATTTTCTTTCTATCTCACATGCACGCTGATCACACTGCTGGCCTCACGTCTTCGTGGAATTCCCACACCATCTACTGCTCAGTAATCACAAAGAAGCTTTTAACGGCCAAACTTCACGTCAGAAGCGAACTTGTTGTTGGCCTACCGCTCTATGAACCTGTGACAATAAATTTAGATGAAGTTGGGAGAGAAACAATGACCGTGACACTTGTAGATGCCAACCATTGCCCCGGATCTGTCATGTTTATTTTCGAGGGATACTTTGGAAGAATCCTTTACACCGGGGATTTTCGTTTCTGCGATCGACTCTTAAAGTACTCTGCTATTAAGGGAAAGCAATTTGACATCCTGTACCTTGATAACACGTATTGTCATCCAAAGTGTTTTTTTCCTACACGTTCTAATGCTACAACTACCGTAGTGGAAATCATTCGAAATCATCCTCAGCACACTGTTGTCATTGGCCTTCATTCTTTGGGCAAAGAAACTCTGTTGTATGATATTGCAGTTGCATGTAAATGTTGGATTGGAATGGACCCCTCAAGAAGCGAGACGATGGAACTGGTTGGAATGCCACAAGTGTTTACTTGTGATGTGGACAGCACAAGAATTCGTGTGGTTAGTTTTCAGGAAGTCAACAAGAGAAACATAGATCTTTGGAACTCAAAAGAACCAACAATTGCAATACTACCAACTTGCCTCTATGTGGGCGGAAGCAATCCATACGAGAATGTGCCAAATGTTTTTGTCGTTCCATACTCTGATCATTCTTCTTTTGAAGAATTGAAGGCGTTTGTGTCAGATATCAGGCCTCGTAAGATTATACCAATAGTTCACAAACACAGACTTTCAGCAGATGAAAATCCTAACAGTAGAGTAAACATGAACATTTTCCAGTCCCTAATGGAACCTTCACCATTGCAAAAGTTCATTGTACCCCCTTCTGTGGAATGTTTCATGGCTCCAGAAATGAAACAAGACGTAAAGAAAAGGATGAAAGCAACAACTAAACTTGGGATTAGAAAAGTTGCCAAAAGCAGAAAGGCATGTGGGGTTGTTTTCCTTCCCAGTCAAGAAGAGTGCGAGGAACGGAAGTTCTGTGGTAGGGCCAATGGCGATTTAGAAGGTAAAGAAAACACAGATAGTGAAAGAGGTGATTGTGTGGCTAAAGAGATAGATATTCAGGAAAGGCATGATAGCATGTTTTCCCTTATGAAGAATGACAGGGAGTCAGGATATGGGTTTCTTGTTGATAACAAAGGTGTGGCCATTAATGACAACTCAGGGGATAAAGTTGGATCAGTGTACTTCATTTTGAAAGAAGGGTTTGAGGTAAATGAGAACATCCGTGAGTTTTCAAATGAACAAATGTTAGAGGAATCTAACATTAGGGAGAGTTCCCTTGCACGTTTTTGTTTCAAACAAGTTGATGGTTCCAGAGAGAAAGAGGGTGATAGAATTGACAAAGATGAAGAAATATTAAATGAAATTAGTAGTGAGTGTACTACATTTGCTGATTTGAAAGGTGTTTGTTCAGGGACGAAAAGAATAGAGAATGATATTGCTGGCATTGAGGACACTCATGATGATGGATACGTAGTTGGTTCTTCATTAGTGCAAAGGGGTCATGCAGAAAAGAGAAGGAGGATAGATGAAGAAGGCACAGATTGCAAAGATGCTACTAAGGCTGAAGAATTAAGGAGTACAGAAACATCATTAATCAAGCAAAGCAGCTTTGTGATGGATGAGGAAATCAAAGAATGCCACAATGACTTTGTTAGTGGAGCTGAGGAAAACAAGGAAAACAATGGAAGGTGTGCGTTTGCATCTCCTTCTGTCAGAAATACAAGTGGTTTTAGCGAAAACGAGAAGAATGTTGTCAAACCAGAGGAGACCAACATATTTTCTTCGATGAGAACAGACAGCTGTTCCAGTAAGAAAAGAAGGGTTGGAGACCAAGATGGTGTTGAAAAGGTCGAGACTGACAATGCCCAGGAAGAACACAAAGTGGATTCTTCCCCAATGCAGGGGGATCATGTTAGAAAGAGAGCAAAGATGGACAATGGTGACAAAGATATCACCATTGTAGGGGACAGTGATGGCGAAGGGAACAAACACTCTGATTTAGATGACCAAGTGGATGATTTTGGATGTGACAATGGGACCTCTGATGATGAGTTGTTTGCGGTAGCGTCCTGCTATCAAAGAGATTACACCTCACGCGTCTGTCAACAAGATGAAAGGGTTACGTCAATCGAGAAATCTTTCACTGATAACCAAGGCAGTAAAAAGAAAGGATTTAATATGTACACCGGCCAAACATGTGATTTTGCAAGGAAAGTCTTGAAAGATATGGTTAGGAATGGATCCCTGTGAAAAGGTAATTTCAAGGTCAGGAGAATTCAACCACAGCATGGTCATACTCTACAACTGCCAGATAGTTGTGCTGCTAAGAATGTGAATAATTTGTATCAATAGCTATTTTTATTGATGTCAAGTTTGAATATTTCTCGTTACAGACCCATCAAAGTTTGTTCTTGTATGTTTCAGTTGAGTTGTTGCGTTTTTGAGTTTTTTCAGCAAGTGTTATCCCTATGCCCATGCATGGAAATCATGCAGATAATGATAAAAGTTCTGTTCATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D2H8V8	5' exonuclease Apollo OS=Ailuropoda melanoleuca OX=9646 GN=DCLRE1B PE=3 SV=1
Q9H816	5' exonuclease Apollo OS=Homo sapiens OX=9606 GN=DCLRE1B PE=1 SV=1
Q8C7W7	5' exonuclease Apollo OS=Mus musculus OX=10090 GN=Dclre1b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002307 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07522 all species →	DRMBL	DNA repair metallo-beta-lactamase	Domain	Interproscan
PF12706 all species →	Lactamase_B_2	Beta-lactamase superfamily domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR011084 all species →	Domain	DNA repair metallo-beta-lactamase	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23240 all species →	DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0035312 all species →	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0036297 all species →	Biological Process	interstrand cross-link repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15341	DCLRE1B, SNM1B; DNA cross-link repair 1B protein	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.