Detailed information of amic_s0191.g1.t1 in Acropora microphthalma

Genomic Location: sc0000191_pilon:1...55617
NR annotation: XP_044174391.1, uncharacterized protein LOC122958021 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5BIM1E3 ubiquitin-protein ligase TRIM45 OS=Bos taurus OX=9913 GN=TRIM45 PE=2 SV=1
Q6PFY8E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2
Q99PP7E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus OX=10090 GN=Trim33 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000199 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17170
all species →
DUF51286-bladed beta-propellerRepeatInterproscan
PF13445
all species →
zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF00628
all species →
PHDPHD-fingerDomainInterproscan
PF00643
all species →
zf-B_boxB-box zinc fingerDomainInterproscan
PF01436
all species →
NHLNHL repeatRepeatInterproscan
PF00630
all species →
FilaminFilamin/ABP280 repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011011
all species →
Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR001258
all species →
RepeatNHL repeatInterproscan
IPR001841
all species →
DomainZinc finger, RING-typeInterproscan
IPR017868
all species →
RepeatFilamin/ABP280 repeat-likeInterproscan
IPR014756
all species →
Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907
all species →
Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR000315
all species →
DomainB-box-type zinc fingerInterproscan
IPR000504
all species →
DomainRNA recognition motif domainInterproscan
IPR027370
all species →
DomainZinc finger, RING-type, eukaryoticInterproscan
IPR019787
all species →
DomainZinc finger, PHD-fingerInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR001965
all species →
DomainZinc finger, PHD-typeInterproscan
IPR003649
all species →
DomainB-box, C-terminalInterproscan
IPR050952
all species →
FamilyTripartite Motif and NHL Repeat Containing E3 LigasesInterproscan
IPR034464
all species →
DomainPARP-10, RNA recognition motif 1 and 2Interproscan
IPR011042
all species →
Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR035979
all species →
Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677
all species →
Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR001298
all species →
RepeatFilamin/ABP280 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24104
all species →
E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0000209
all species →
Biological Processprotein polyubiquitinationInterproscan
GO:0043161
all species →
Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →
Molecular Functionubiquitin protein ligase activityInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0191.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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