Genomic Location: sc0000191_pilon:390077...399175
NR annotation: XP_015766954.1, PREDICTED: 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families
| CDS |
| amic_s0191.g27.t1 |
| Transcript |
| amic_s0191.g27.t1 |
| Protein |
| amic_s0191.g27.t1 |
| UniProt accession | Description |
|---|---|
| P48416 | Cytochrome P450 10 OS=Lymnaea stagnalis OX=6523 GN=CYP10 PE=2 SV=1 |
| A8WGA0 | Cytochrome P450 27C1 OS=Danio rerio OX=7955 GN=cyp27c1 PE=1 SV=2 |
| P17178 | Sterol 26-hydroxylase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Cyp27a1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000338 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00067 all species → | p450 | Cytochrome P450 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050479 all species → | Family | Cytochrome P450, families 11 and 27 | Interproscan |
| IPR001128 all species → | Family | Cytochrome P450 | Interproscan |
| IPR036396 all species → | Homologous_superfamily | Cytochrome P450 superfamily | Interproscan |
| IPR017972 all species → | Conserved_site | Cytochrome P450, conserved site | Interproscan |
| IPR002401 all species → | Family | Cytochrome P450, E-class, group I | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24279 all species → | - | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005743 all species → | Cellular Component | mitochondrial inner membrane | Interproscan |
| GO:0006700 all species → | Biological Process | C21-steroid hormone biosynthetic process | Interproscan |
| GO:0006704 all species → | Biological Process | glucocorticoid biosynthetic process | Interproscan |
| GO:0008203 all species → | Biological Process | cholesterol metabolic process | Interproscan |
| GO:0034650 all species → | Biological Process | cortisol metabolic process | Interproscan |
| GO:0071375 all species → | Biological Process | cellular response to peptide hormone stimulus | Interproscan |
| GO:0004497 all species → | Molecular Function | monooxygenase activity | Interproscan |
| GO:0005506 all species → | Molecular Function | iron ion binding | Interproscan |
| GO:0016705 all species → | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
amic_s0191.g27.t1.Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
