Gene detail

Detailed information of amic_s0195.g23.t2 in Acropora microphthalma

Genomic Location: sc0000195_pilon:187817...195925
NR annotation: XP_029201073.2, uncharacterized protein LOC114965536 isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0195.g23.t2

GGAAGAATTGGTAAGGGACGCTATTTTTCATTTTATCGATGGCAGCCATGACAGACAGCCTAAAAGAGCGAGAAAATCTGTACAAGCTGATGATTAGCCAGCTTCGGTATGATGGATTTGAATCCATTGCGTCTACCTTGTCGAAAGTTGTCAATATCATCAGTGCTTGTCCTCCAATGGCGCGGTTGCATCAAGTTGTCAACCTCGGCATTCAGGCTGAAGCAGAAGGAGCAAGACCTGAACAGCCAGCCGTCCCTGGCCTAACACCTCAAGTTGAAACTAATAGAGGAATTGATTTAGAGTATGAACCCGAAGGAAATGAAGCATCTGGAGAATGGCAAAGGTCCTCTTCTGCAGATGAATTATTCATGAGCAATCTTGAACTCCAGAAAATAGATCGGGAAGCTGGCAAAGGCAAAGAAGACGATTCGCCCTCAGCTGATGCCGTCATTCAGCACATCTTTAAAATTACTTCCAATAGGAAGCTCTCTCACTTTTCGCAACTACGTGATCCTAAACCTTTAAGTCAAGCGTCGAACAATGTTACAAATCAAAATAGTGATGTAGTGGATGCTGAGGGTATCTGCGAACAGGTCAAAATTGAACTCATAAAGTACAGCATATCACAAGAAGTGTTTGCTAAGGCGGTCCTTGGAAAATCTCAAGGATATCTATCGGAAATGCTCAAACATGGAGAGAGTTTTTTCCGGCCGCAAGACCACACCCACTACAAGGGATGGTTGAATTTTGAGACCATGCGACAATTTCTTCAAAAACCCGAAGCCGAGCGCTTGCAAATTTATTATCAAAAGGGAGAAGAATTGAAGATGGAGAGACTGAAACGAAGGCAACTGGAAGTGTGTGGAAGAAGGACTAACATTGCACCTCGAGTGTTCTCAGAAGTGGAAGGTCCTTTAGCAAAAGGCGCTCCTGAGATTGACTTAGTGGAGTCAAAAATTGCTGCTCTGACCCAGTGTCAAAAGGGAACGCCAAaacaacaacaacaacaacaacaacaacaGGAAGCGAAATGTTTAGACACTGGAAGTCGAACAGATGTTTGTCCTGCAGTGTCAAAAATTCCCCCAAGTACAACCTGTCAGCCCTCTGCCCAGGAAGACCTTGCTGGTGGAAGGAATGGCGTATTGTCTCGGGAATCTTCCACTGGTGCAGACACTGTACAAACATTCTCGTTTGACACCCTAATCGACGGTTCCATGATGTTACACGAAGGATCATCTGAGAATGAAGAAGCTCTGGATGTTGGGCGGCAGATATATGTTGTACACTTAAACAACCAGATGGAGACCATTGTTCAAAACTGAGGTGCGATAAAAGTCCCTGTGAAGCTAAGAGAGACGTCAGTTTCTTATACCTGAAGCTAGCCTCCAGTGTTGTTGATAACAAAGTGGCTTTAACTATCCAAAATTTCTTAACGTTTTTGAAAGGGATCTAACTGGCAACTTAAGACAAGTTTCTGGTCACCAAATAGCAAATTGTTGTCACCAAAAACGTCCTACTGTTTTTCAGCAACTGAACAATCTACTTTTTTCACAAATTTAAGAAAGTTTGCTATGTCTTGCCAGACACTTTGCCGGAATCAATATTCACGGTGAAAAGAAAGCACATGATGTTGTGCGCCGGTATTTTGCAATCCAGGAGAGATCACcaaaaaacacaaaccaaaacaaaacagaaTTGAAACATGGGAGCCATGTAGGCAGCAATCCTTAATCAAGATGGATTTTGGTTATGATGAACCTCATTTCAATTTCACTCTAAAGATATTGAGAGAACAAAAAAGAAGACCCCTGTTGGCAGATGTCTTGAAATTTTGTTTTTGATCACTCTCTCTTTGTCATTAGCGGTGGCAACGTTAGTTAAATGTTGGTGACCGTGTCTGAAGTCCTGGTCACTAGCTGTCAATTGTTAGTTGCCTTGGTAACCAGGAAGGCACAATATTATTTTGGACCCTGGTCAGTGCAATATATATAATGATTATTATATCTTATACAAATGCATCTCATTAATATAAACACATCTCATTAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05048	Cleavage stimulation factor subunit 1 OS=Homo sapiens OX=9606 GN=CSTF1 PE=1 SV=1
Q99LC2	Cleavage stimulation factor subunit 1 OS=Mus musculus OX=10090 GN=Cstf1 PE=1 SV=1
Q5R8K2	Cleavage stimulation factor subunit 1 OS=Pongo abelii OX=9601 GN=CSTF1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002738 (this species only)
Transcription factor family	CUT · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16699 all species →	CSTF1_dimer	Cleavage stimulation factor subunit 1, dimerisation domain	Domain	Interproscan
PF02376 all species →	CUT	CUT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003350 all species →	Domain	CUT domain	Interproscan
IPR038184 all species →	Homologous_superfamily	CSTF1, dimerization domain superfamily	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR032028 all species →	Domain	Cleavage stimulation factor subunit 1, dimerisation domain	Interproscan

PANTHER

No PANTHER signature was detected for amic_s0195.g23.t2. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24885	HMBOX1; homeobox-containing protein 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.