Gene detail

Detailed information of amic_s0197.g23.t1 in Acropora microphthalma

Genomic Location: sc0000197_pilon:228016...230032
NR annotation: XP_029194960.2, major facilitator superfamily domain-containing protein 6-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0197.g23.t1

TTTACAGAGCTTCTTTTGTGTTGTAATACCACGTCTAATTTGAAAACAGCTTTTGTTGGCAAAACATGACCTGTGCGCTCAGCCCGCAATGCCTGCCAAAAAGATGGTGAATGAAACACAGGACTGCGACGAAACAAAGAAAATCCTTTGTCTGAACTTTAGCCGCTTAAATCGAAAACTTGTGGTGTCAAAAGTTTTTTATTTTTGTTACTGGGGAGCTGTTGGCTCGTTTTTTCCTCTCCTAGGAGTTTATTTCAAGCAACTTGGAATGAATCCCAGTCTAAGCGGCATTTTAGTCGGTTGTCGACCAATGGTGGAATTTTTCAGCGCTCCGCTTTTGGGATCACTCGCCGACAGACTGAACAAACGCAAGCTTCTATTGTTATTTTCTCTAGTATGTTGGATATCTTTTAATTTTTCACTGGCCTTTATAAAACCGGCACCAGTAACTTGTAGGAAATATTTTATCCTGACAGAAAATGTATCCAAAATTGTTTCAGGAGAAACCTCGGAAATCAAAGAGTTTTTGGGACCAAACACCCCAGATAAGAAGGAACCAGAGTTTAAAGCCAAAAGCTCTTTAGTTTATGACCGAGAAGGCGTTCATCAAGTGTTTTTAGTACTTTTGTTTTTAACAGTGGTTGGAGAGTTTTTCTCGGCGCCAGCCATAACTTTAGCCGATTCTGCAACTCTTGGAATCCTCGGAGAGAACAAAGAACTTTACGGCCGACAGCGCATGTGGGGAAGCCTTGGTTGGGGTGCCGCCATGTTCCTTCTTGGTTTTGTCATCGATAATATGAAAGGAGTTGAAGTTTGCGGTGAAATCATCAGTCAAAACTACACAGTTGGTTTTTATTTCTTTTTCGTTTTTATGATGTGCGCTCTAACCGTGGCCACCCGTTTGTCGTTTCCAAACAAAGACAAGATAGAACTGGAAGGAGAGCTTTCTGAAAAAGGCTCAGGTTTATATCGTATTCTGCTTTCTCTCCGGTATGGATCTTTTCTACTGGTGACTTTCTTCCTTGGTTTTGGAGTAGGCCTTATCTTCACATTTCTTTTCTGGCACTTGGAGGACCTGGGCGGTCCGCCGACTTTGTTCGGGATAGCTTCGTTAATCGACCACATTTCGGAAATCGTTTGTTATTTCAACGTTGGTCGGCTTATCTGCTGTGTCGGTCATATTCGCGTCCTCTACATTGGCCTTTTGGGTAATCTCATTCGTTTCATCTACATTTCGTTCCTTAAAAAGCCATGGTTAGTGCTTCCACTTGAGATTTTACAAGGAATTACCCATGCTGCAGTTTGGGCCGCTTGTACCAGCTATGTTGGGCGTATTGCCCCTCCTGGTTACGCCACTTCTGCGCAAGGAATTTTACAAGGATTGCATCATGGTCTCGGCAGGGGTTGTGGGGCGATCATTGGTGGGTTACTCATTCACAACTTTGGTACTGAGATGACATTCAGAGCTTATGGCATAGCCAGCCTCGTTGTCTTGATCCTGTTTGCAGCTGTGCAGAAAATCCTGGGCACAGACGAGCGAATGGCCGATACAACAGCTAGACCAAGTCGATTGGACGTTACAACCAAAGCTAAGCAGAGCCCCAATAACAGCCCCGAGATGGATTCACCGCCTTCCGTAGTAGCACCTCTCTTGTCTGGTCTCTTTTCTCATCGAAATTCGGGAGACCGTAACTTTGGAGTTGTAGGAAGACACATTCAGCCAAGAAGTACATCCAGCTGACAGACAATCCTTTGAACCCAGGATTATGTAGTCCTGTTCCGAACTCCCTCCTTAACCGCCCCACATGGGATCTGAACAGAGGTCCTATGTAGGGCGGGGTAAAGATGGAGTCCGGAACAGGACTAAGGATTAACATAAGTTGTTAGAATCCGGTTTTCCGTGACCGAGTCACTGTTATCCTGAAAATGAATTTCTTTTTGACTTGCGTTTCGACAATTCATGAAGAAATTTCGCTCAACTAAGTTGTGAAAACATCAATAAAAAACAATAGCCATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1DWM3	Major facilitator superfamily domain-containing protein 6 OS=Sus scrofa OX=9823 GN=MFSD6 PE=2 SV=1
Q8CBH5	Major facilitator superfamily domain-containing protein 6 OS=Mus musculus OX=10090 GN=Mfsd6 PE=1 SV=1
Q1LUQ4	Major facilitator superfamily domain-containing protein 6-A OS=Danio rerio OX=7955 GN=mfsd6a PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000245 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12832 all species →	MFS_1_like	MFS_1 like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024989 all species →	Domain	Major facilitator superfamily associated domain	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR051717 all species →	Family	Major facilitator superfamily MFSD6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16172 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0197.g23.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.