Detailed information of amic_s0197.g26.t1 in Acropora microphthalma

Genomic Location: sc0000197_pilon:249036...270361
NR annotation: XP_029194929.2, DExH-box ATP-dependent RNA helicase DExH1-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
F4ILR7DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana OX=3702 GN=At2g35920 PE=2 SV=1
Q05B79ATP-dependent DNA/RNA helicase DHX36 OS=Bos taurus OX=9913 GN=DHX36 PE=1 SV=1
Q9H2U1ATP-dependent DNA/RNA helicase DHX36 OS=Homo sapiens OX=9606 GN=DHX36 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000674 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07717
all species →		OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF21010
all species →		HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan
PF04408
all species →		HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF00271
all species →		Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR011709
all species →		DomainDEAD-box helicase, OB foldInterproscan
IPR001650
all species →		DomainHelicase, C-terminal domain-likeInterproscan
IPR048333
all species →		DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR007502
all species →		DomainHelicase-associated domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934
all species →		ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0004386
all species →		Molecular Functionhelicase activityInterproscan
GO:0005622
all species →		Cellular Componentintracellular anatomical structureInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0197.g26.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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