Gene detail

Detailed information of amic_s0197.g27.t1 in Acropora microphthalma

Genomic Location: sc0000197_pilon:271406...276240
NR annotation: XP_029194882.2, serine/threonine-protein kinase DCLK1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0197.g27.t1

ATGGCGACAAGCAATTATAATTCCTCCTTTCGCGGTCCTACTGATCACGAAACCGCTCGCTCTTCCAAAACGGTCACGTTTTACATCAATGGTGACCGAAATTTCCATGGCCATGTTATGGTTATCACGTCCAGGAGATTTCGGAGCGTAGATATACTTTTGTTGGAGTTAGGTAACCTTCGATACTTCAAAGATTTACCTTTGGGAGTGCGTTACTTGTTCGCCTTGGAGACTGGCAGCAAAATTGACAATCTCGATCAGTTAATTGACGGCAAAGCTTACGTCTGCTCATCCCACTCACGTCTCAAGAAGATTTCATACGGAGGTAGACAGCGACAGTCCTTTTGGGGCGCTAGACAACAGTTTGAACTGCCTAATATTCATGAAATGGAGAGTAACGAGACAAGACGACGACACCTCGGAGTGAATCGATCGTCGGAAAGTTCAGAGCACCGAGGAAAATCAGATACACATGCCGCTGCGAGTGTTAGTAGGGTAAACAAAAAACCAAAAATTGTAACCGTGATCAGAAATGGACCACACAAGCCTCGAACAGTTGTGAAAACTCTTTTAAATAAAAGGACGGCACAAAAACTCGAACAAGTTCTAGACGAAGTTGCGTCGGCGTTTGGGAATACTGGCGGATTGAGCCCTCCAAGGAAACTGTTCACAGTTACGGGGCAGCATATCCGAGATGTGGCCGAGCTATTTCGGGACGAAAATAACGTCTTTATTGCCGTTGGAAAGGAAAAATTCAGCCCTGAAGAAATCTCGGATATTTTGGAAGACTTGGAACAAAATGCGAGTTCGAAAAGGCAAACTAAACACAAGCAACCGAAAGCGAGTAACGAAGGAATGTCATACGGTAAACAAAGAAAGGACAAAGAACTTGAACAAAGTAAATCTCTTGCGACTGCAGGAGAGAATAAACTGCCTAAGTTACCAGATATTCATACCAAAGTCGAGAGTCAACCGCAACAGGAAATCACTATTAAACCACACGCGCAAATAGCATCAACAACAAAACACACACGAGTGAGTCACGACAAAGGTGCGAAAGTAAGGGCTAACGAGTTACGCAATCCGGAAAGAAAACGCCAGGCCGGGTTGAAATTACCGCAAATTAGCGGTAATAACTTGGTGTCCAAAGCAGAAAAAGAAAATCAAGAAAAAACTGAAATATCCAAACCCAGTGATGAAGGAAACAACAGTGTTTTTGGAACAAATGCGACGCACAGCCAAGTCATAGGATCAAAAAATACGAGTGATGGTCACGGAGGGAAAGGAAAACAAAGGAAGAAAGATTCCGTGAGTAAGAATCAAACTTCTAGCAGCAACAAAACCCTCACTAAATCTTCAAGAGATGATAGTGGAATTGTAGCTGAGGACGATGTGAAATACGGTACTGTCACGGACAAAAACGTCGAAGATGTCTATCACATGGGAAAGAAAATTGGAGATGGTAATTTCGCTGACGTAAGAGAGTGTATGGATAAAATAACAAAGAAAGAATTCGCGTTAAAAATTGTGGACAAGAACAAGATTCGAGGCAAAGAGCAAATGATAAAGGACGAGATAGAGATCATGCGGAGATGCAAACACCCAAACATTGTTCAGATGTACGAAGATTATGACACACCACGCCATATTTACTTGGTGATGGAGCTGATCAAGGGGGGTGATCTGTTTGATGCCATCTCGTCCTCAGTCAAATTTACAGAAGATGTGACACGGAGCTATGTGAAGGACATCGCCAAGTCACTAGCGTATTTGCACAGGAGAAAAATAGTTCACAGGGATCTCAAGCCCGAAAATCTTCTGGTCCATAAGAAACCCAGCGGTCAAACAATCCTCAAACTGGCAGACTTTGGTTTAGCTATGGAGGTCAAAACTCCAATATTCACTGTTTGTGGAACACCAACTTACGTGGCACCCGAAATACTCGAGGAGACTGGGTATGGACTCAAGGTGGACATGTGGGCAGCGGGTGTCATCACCTATATCATGCTCTGTGGTTTCCCGCCATTCCGAAGCGCAAAACGGGATCAAGATGAACTATTCGATTTGATAATGGAAGGTGACTATGAATTTCTGTCCCCATACTGGGATCATATTTCAGAAGGAGCTAAAGATCTAATCTCTAAACTACTTGTTGTGAATCCAAACGAGCGGCATTCGGCCGAAGACGTGTTGGTTCACCGTTGGATAAAGAGCGCTTCTAATTCGGAACTCGGCGAGGACGAATTTCTTGGTCGAAAGATCACGACACGAAGAACGTTCAAAGCAGCCGCTTTGGCAGTGCAAGGAGCTAAGAGATTCGAAAGTCTAGCAGAACAGTTTAAGCATCAACGGGGAGAGAAAGTCATCGTCAGGTGA

Transcript

amic_s0197.g27.t1

TCGTACTCTCGCGCAGTGAGTTGCGAACTGAAGAAAGCAGTGATGTAATGAATAGGAAAGAGCTCAATTCGCCGCTTTAATTGCGATGTAGTAAATCTTCATGTCTTTTTAACGGCACTTGATTCATATTTGCAACTACGAAGAAACTAGAACGGGCGACAAAAGTCACAAAGTCACTTCATTGAAGCTTCAAGACTTAGCATAACATGGATCATCGATTTTCCGACTGTGGTATGTGTTAGTTGTACTGGCGATGTTATTTCCGAACGAGAAGTGATATCGGAAATGTTAATAGTAAGGAGCTCTTGGAAAGCCGTAAAGACCCTTTATCCACAAAGAAATAAGCCCATTTGAATAGGAAACAACAGATGCAAGATGGCGACAAGCAATTATAATTCCTCCTTTCGCGGTCCTACTGATCACGAAACCGCTCGCTCTTCCAAAACGGTCACGTTTTACATCAATGGTGACCGAAATTTCCATGGCCATGTTATGGTTATCACGTCCAGGAGATTTCGGAGCGTAGATATACTTTTGTTGGAGTTAGGTAACCTTCGATACTTCAAAGATTTACCTTTGGGAGTGCGTTACTTGTTCGCCTTGGAGACTGGCAGCAAAATTGACAATCTCGATCAGTTAATTGACGGCAAAGCTTACGTCTGCTCATCCCACTCACGTCTCAAGAAGATTTCATACGGAGGTAGACAGCGACAGTCCTTTTGGGGCGCTAGACAACAGTTTGAACTGCCTAATATTCATGAAATGGAGAGTAACGAGACAAGACGACGACACCTCGGAGTGAATCGATCGTCGGAAAGTTCAGAGCACCGAGGAAAATCAGATACACATGCCGCTGCGAGTGTTAGTAGGGTAAACAAAAAACCAAAAATTGTAACCGTGATCAGAAATGGACCACACAAGCCTCGAACAGTTGTGAAAACTCTTTTAAATAAAAGGACGGCACAAAAACTCGAACAAGTTCTAGACGAAGTTGCGTCGGCGTTTGGGAATACTGGCGGATTGAGCCCTCCAAGGAAACTGTTCACAGTTACGGGGCAGCATATCCGAGATGTGGCCGAGCTATTTCGGGACGAAAATAACGTCTTTATTGCCGTTGGAAAGGAAAAATTCAGCCCTGAAGAAATCTCGGATATTTTGGAAGACTTGGAACAAAATGCGAGTTCGAAAAGGCAAACTAAACACAAGCAACCGAAAGCGAGTAACGAAGGAATGTCATACGGTAAACAAAGAAAGGACAAAGAACTTGAACAAAGTAAATCTCTTGCGACTGCAGGAGAGAATAAACTGCCTAAGTTACCAGATATTCATACCAAAGTCGAGAGTCAACCGCAACAGGAAATCACTATTAAACCACACGCGCAAATAGCATCAACAACAAAACACACACGAGTGAGTCACGACAAAGGTGCGAAAGTAAGGGCTAACGAGTTACGCAATCCGGAAAGAAAACGCCAGGCCGGGTTGAAATTACCGCAAATTAGCGGTAATAACTTGGTGTCCAAAGCAGAAAAAGAAAATCAAGAAAAAACTGAAATATCCAAACCCAGTGATGAAGGAAACAACAGTGTTTTTGGAACAAATGCGACGCACAGCCAAGTCATAGGATCAAAAAATACGAGTGATGGTCACGGAGGGAAAGGAAAACAAAGGAAGAAAGATTCCGTGAGTAAGAATCAAACTTCTAGCAGCAACAAAACCCTCACTAAATCTTCAAGAGATGATAGTGGAATTGTAGCTGAGGACGATGTGAAATACGGTACTGTCACGGACAAAAACGTCGAAGATGTCTATCACATGGGAAAGAAAATTGGAGATGGTAATTTCGCTGACGTAAGAGAGTGTATGGATAAAATAACAAAGAAAGAATTCGCGTTAAAAATTGTGGACAAGAACAAGATTCGAGGCAAAGAGCAAATGATAAAGGACGAGATAGAGATCATGCGGAGATGCAAACACCCAAACATTGTTCAGATGTACGAAGATTATGACACACCACGCCATATTTACTTGGTGATGGAGCTGATCAAGGGGGGTGATCTGTTTGATGCCATCTCGTCCTCAGTCAAATTTACAGAAGATGTGACACGGAGCTATGTGAAGGACATCGCCAAGTCACTAGCGTATTTGCACAGGAGAAAAATAGTTCACAGGGATCTCAAGCCCGAAAATCTTCTGGTCCATAAGAAACCCAGCGGTCAAACAATCCTCAAACTGGCAGACTTTGGTTTAGCTATGGAGGTCAAAACTCCAATATTCACTGTTTGTGGAACACCAACTTACGTGGCACCCGAAATACTCGAGGAGACTGGGTATGGACTCAAGGTGGACATGTGGGCAGCGGGTGTCATCACCTATATCATGCTCTGTGGTTTCCCGCCATTCCGAAGCGCAAAACGGGATCAAGATGAACTATTCGATTTGATAATGGAAGGTGACTATGAATTTCTGTCCCCATACTGGGATCATATTTCAGAAGGAGCTAAAGATCTAATCTCTAAACTACTTGTTGTGAATCCAAACGAGCGGCATTCGGCCGAAGACGTGTTGGTTCACCGTTGGATAAAGAGCGCTTCTAATTCGGAACTCGGCGAGGACGAATTTCTTGGTCGAAAGATCACGACACGAAGAACGTTCAAAGCAGCCGCTTTGGCAGTGCAAGGAGCTAAGAGATTCGAAAGTCTAGCAGAACAGTTTAAGCATCAACGGGGAGAGAAAGTCATCGTCAGGTGATACAATGGCTTTTTCTTTAAAGATTCTATTAATCTATATGATCCCTCTTCCGACCAGAATGTGCGCTTGCGCTTATTAGATGCTACGACTTCGGCCTCTGAACGCAATGACATTGGTTGTTTGGTATTCAGTCATTCTGTCCTAACGAAAGCTCTCTCAACCTCTGTTGGAAGCAGGCTTGATATTTCATATAGTCATTCTGTCCTAACGAAGCCTCTGTCAACCTCAGTCTGTTGGAAGCAGGCTTCATATTTCCCTCGGATGGCCTTCCCAAACCCCGTTCTAAAGTTGCTGCACCGTCGTTGATTAAAATATCAAGTGGAATGCTTTTCTGGGGCATAAAAGTAAATGGAGTTGCATGCGTAGCTTTGAAAAGAAGACGTCCTTGTACTCTAACATTTTGTAATTTATCAATATCAAAGAAAATTTATTTCATGAGACTTCATCTAATCAGCCGGTTGAGAGCTGTGGTATTCACTTTGCCTAAAAAAAGTTGTTACGTCGAAGTAAAATTTGTCCGTTTCTCTCTAGAGTTCGAGATTTTAATTCATTCCCTTTCAATGTAGATAGTGTAATCAGAGTTGTACAATTTTATTTTGATTATTCACAATGACAATTGTCTTCACAAGTTAACTACAACTAGTTGTAAATGCTTCCCCGCAAACACTCAGATATTTATGGCGCTGGGTTCGAATAATCATGTCATATTTTAGTACTGTAGCCACGTATACAAATTAATATTGGGGAAAGTCGTTATATTATTACAGTATATATATATATAGTGATGTCAATGTTCATTGCACGAAGCCATTAAAAAAAATAATAAATGTACAATGTTGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9C098	Serine/threonine-protein kinase DCLK3 OS=Homo sapiens OX=9606 GN=DCLK3 PE=1 SV=2
O08875	Serine/threonine-protein kinase DCLK1 OS=Rattus norvegicus OX=10116 GN=Dclk1 PE=1 SV=1
Q8BWQ5	Serine/threonine-protein kinase DCLK3 OS=Mus musculus OX=10090 GN=Dclk3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000487 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF03607 all species →	DCX	Doublecortin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR036572 all species →	Homologous_superfamily	Doublecortin domain superfamily	Interproscan
IPR003533 all species →	Domain	Doublecortin domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24347 all species →	SERINE/THREONINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08805	DCLK1_2; doublecortin-like kinase 1/2	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.