Gene detail

Detailed information of amic_s0198.g16.t1 in Acropora microphthalma

Genomic Location: sc0000198_pilon:196826...211733
NR annotation: XP_029204765.1, gamma-aminobutyric acid receptor subunit beta-1-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0198.g16.t1

TACCACGTAATAAAGAGATAACTTGTTTAGCTATGGGGCTTCAAATTCAGTGGTGAAAAAAGAAGGAGCCTTGATTATATTCGACATGTACAACCACTTTTTAGAAGAGGAGTGACAGCTCAGTACACGGACAAATTCTAGCGGCAGTTTAAAACAGCTATAGTCAACACACGAAGAAACGAGTTACTGGAAGCTGAAGAACTTCAAATTAACCAGGTCAATTAGGAACAAATATTGAAGGTTTTCTAACACTGAAGTGCAAAATGCAAAGTTTCAGATTCCACAAATGGCCAAATAAGCATGCGCACTTAAGTACTCATTATTCCGAACAGTTATCAACTGAAAGTCTCTCACTCGTGAAATTTCCTCAAGAAGCTGGTCTTTGCAGATTTTGAAAGAGCCCAGTCGATGTAACTGCCGTAACGCTAAACAGCCTAAACTCTACAGTCGTCTCTCCCCTATCGAGAATGTTCAATAATTATGGCAGATATCATTGGTACTTGATTCCACTGGCCATCGTTGTTTTAAGCCAGTTGCCCCTCGCTAGCACTTCCAGTTCAAAAACTTCTGAAATGGAATCCAGTGTTTACACTAACTCCACTTTAATATTGGAAGCGCTTTTGAAGGGCTATGACAGGCGAATCAGGCCAGATGTTAAAGGTACTCCACAGAAAGTCCGGGTTGACATGTATGTTGCTAACATTTGGGCCATGGAAGAAGTTAAAATGGAGTTTACAATTGATATTTATTTACGTCAGTATTGGAGAGATGAACGGTTATCGTTTGCTCATTTGACCTCTGACCCCATCCTGACTCTGAGCAGTAACATCAACAAACAAATCTGGATCCCGAGTACGTATTTTCTGAGTACCAAGAGAGCTTACATGCATGATGTGACAACAGAGAATTACCTTCTCCAGATTCGACCCAATGGGAGTATATTTTACAGCATAAGGCTGACAATTACTACGTCCTGTATGCTGAATTTGCGTAAATTTCCTCACGACACGCAGAGGTGTACTCTGGCCTTGGAGAGCTATGGTTACCAAACATCAGACGTATGGTATGCTTGGAATGATAGGAATGACAACACTTCTGCCATTTTCGTCAACAAAGCGGTGGAGCTGCCTCAGTTTGAGTTGGTTGGTGTCGATAAAACATCGGTAATAAATCAATACAATATAGGCAACCACTCCTCCTTGATAGCCACTTTCAAGATGAGGCGTCGTATCGGCTACTTTTTAATTGACACTTACGTACCGTCGACCATCATAGTAATAATCAGCTGGATATCATTCTGGATTAGTCCCGAAAGTGCACCTGCGCGTGTTGCCCTCGGAATTACAACCGTGCTCACCATGACAACCCTAATATCCAGTGCCCGTGCTTCTCTTCCGAAAGTGAGTTATGTCAAAGCTATAGATTGGTACTTACTCTTGTGTCTTATCTTCGTGTTTGGATCCATTATGGAGTACACGTTTGTTGCGTTTATCTTAAACATTATGAAAACAAAGAAGAAGAAGCGAGAGGCGGCTTTAGAGGAAAGAGATTGGAGTACATGTTCCAAGGACAGAATAGAGTCAGGAGAATGTCCGTCCTTGTTTGCCCCGAAGTGTTCTCCGAAGCGAGGGAACAGACTAACACGGCTGTGTCATAAGAAGGAGAAAGATGAGCTACCAGAGGTGGATCTCAAAACGCTAGGCGACAAAATGAAGGAAAGGCATTGGTTTCCTATTCAGGACCCAATTACAGTCGACAGAATATCCAGGATTGGCTTTCCTTTGACCTTCTTTGCGTTTAATTGTATCTATTGGTTAATCCATACAACGGATTAAAATCGGGGCGGGTTTAGATGAGGGGTTTAGTGAAAACATATAGGATATTTCTGCACACACGGTTTAGTTGAAAACTGGGAGCCTTGGGCCTTGCACTAAAGTGACAATAAATGCAAGAGCATCAAGAAACCCAGCTTGTAGGTGGCAAGCAGTTCTGGCGCGGTGGGCTACGTTGAATAAGGGACTTACGGCGACAGAGCGTTATTTTAGCCTAGAACTGAATATCTGCGTTCAAATCTGGGAAGGCGACGAGTTGATGACACCAACCCCTACAAGAACATTTGCACCGGCAAGACCAGATAAGAAGATTCCAAAGAGGGAATAAACCTTCATACTTGGTATCAATCTACCTCTTCAACCTTGCAGAACCACAGGAAGTTTCACGCTCGCTTAACCTAATATATTAAGTGAACGGGTCGCCCCAATTGCAACTTCGAACATATgccccatgtaaggtattctaaacgagtcttggattctataccctactttagattccgaatttccctaagtggattttaggtttccgaactggccgaattcccagccgcagcgggattccGGAACCCTGCTGGCTTTACATGTGGCAATACATGTCATTAAACATTTTCGCGTAAAACGCAATACCTCTGTAACCTAAAATTGGACATAATAAGGAGTAAATTAATACAAAAAAGGTATCTCTAAACAAATGCTTGACGAGTATGATTTGTTCTGGTAGTGTAAAGCAAGATTGTTGCTATAAGCTCTCTTTAAAAATATTATATTTCCGCTTTCGTTAATTTGACAAATGACTCCGTAATTTAAGAAGGTACACAAGCCACTAAGATCCTCACCTATCAGGTAAAAACTGTGTGTCACGACACCAGCTAGCTGGGATTTTAGTACAAGGTATGGTTACCAAGCGCATGCCTGTACGAAGAGACTCGATGGCAGTGGATATCCCCCAGAGGTCCTACAGCAACTGTCGACAGTTTTGACCTAGCTTAGTTAGTTAAGGTTTGATTGATTTTTATTCAGTCAAGAAAACAGGTGTTTTTCAAAATTCAGTGATAATCCACAACAAAAAGAGAACACAATGTCACCAATGTAGCTGTCTGAACTGGACAACCTGACCCGAGAATGTAATGATTACTGCTGAAAACCAATCTCCGGTTTGCCTTCATCTTTTCTTGAACAGCATTAGTGACTGGCGGCTATCTCGATAATTTGTTCCTGTTTTAAATTGTCTAAATATGAATAAAACCTCGTTGTTACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50571	Gamma-aminobutyric acid receptor subunit beta-1 OS=Mus musculus OX=10090 GN=Gabrb1 PE=1 SV=1
P63080	Gamma-aminobutyric acid receptor subunit beta-3 OS=Mus musculus OX=10090 GN=Gabrb3 PE=1 SV=1
P63079	Gamma-aminobutyric acid receptor subunit beta-3 OS=Rattus norvegicus OX=10116 GN=Gabrb3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000255 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932 all species →	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006201 all species →	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR005437 all species →	Family	Gamma-aminobutyric acid receptor subunit gamma-1/4	Interproscan
IPR006028 all species →	Family	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR006029 all species →	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR018000 all species →	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18945 all species →	NEUROTRANSMITTER GATED ION CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005231 all species →	Molecular Function	excitatory extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005254 all species →	Molecular Function	chloride channel activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030594 all species →	Molecular Function	neurotransmitter receptor activity	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0050877 all species →	Biological Process	nervous system process	Interproscan
GO:1902476 all species →	Biological Process	chloride transmembrane transport	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0004890 all species →	Molecular Function	GABA-A receptor activity	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0007214 all species →	Biological Process	gamma-aminobutyric acid signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0198.g16.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.