Gene detail

Detailed information of amic_s0198.g34.t1 in Acropora microphthalma

Genomic Location: sc0000198_pilon:391254...402645
NR annotation: XP_015771173.1, PREDICTED: allene oxide synthase-lipoxygenase protein-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0198.g34.t1

GAACAAGCTTTCAGCTTTTCAAGTCAGAGCAGTTGCAGTCGCATTCTGATAGAAAAACTGCCTCAGTAGGTATGTACAAGTACGCTATTGCCAATCTGGCCAATGAGCTCTTGTGATTTATCGTCAATATGCTAAGGACAGTACAGTTTTTACAAAGCAGGACATTTTTCTTTGAAGACCACAAGAAGCCAGGATTTCTGTAACAGGAAAGAAATAAGCGACAAAATGGAATGGAAAAACTTGGGCTATGAAATTTACAAGGAAAGAAAGGGAGAAGAAGAATTTAAGAGGAAAATGGAGGAAGCTGACACGATACCACCAAGCAGCGTCTTTGATAGAGCTAAACTTTACTTCACAACGGAAAAGTTTAAACTGATGTTTGGGACTGTGGCCCTGGCGACCAATAAAAGGCCAACTCATCCAGTTGGCATCGGGGCCCAGGGAATTGCAACAATCGTAGCAGATCCTCAATTTCCAGACTGCGAGTTCTTCACTTCTGGTCGGTCTTATACTTTGTGCCTTCGTCACGCAACCTTAAAACCGCACGATGACGCAGGATTGAATTTCTTGAGTGCCTCTCTGCGCTTTGCTGATACTGACACTGAAAGTCCTTTGGATATCATGATGTCGACTGGAAGATGTTCTGTATTTTCGAATGTGCAGGGTATATATGATGCAATTGATGCTCAAAGCAGTGGTAACCTTTTAGAGTATTGTTTCAAATCACCTGACATCCTTGCTGCCAACATAGATGGTCTACGGCGTGCTCCGAAATCCTTTGTTGACCAGCGGTATTACTCAGAAGTCATATTGGCTTTTAAGGCCTTTGATGGGGTTGAGCGATATGTCCGGTTCCGACTTATTCCCGCCGATGATAGACCAGAAACAGGTCTGCTATCAGAGGAGGATCAAAAAAATGTTTGGAATCAAGATAGATTGCCTTCGGAGACAAGAAGCAAAGATTATTTAAAGCATGACGTCAAACAAATGCTTGATAATGGACCTTTGAAATACAAACTACAGCTTACCTTACATACACCACGATTTGGGGACCCTGCAGACATTCTGAATCCCGCACGGTACTGGGACGAGGCCACTCATCCCTGGTTAGATGTCGCTGACATCAATGTAGGAGTGTTCCTAAGCCCGGATGTTACGGAGAAGATGTGTTTCAATCCAGGAAATTTACCACCCTGCCTCGAATTCCTACCAGCCATCTCAATTTATCACCCCAACTGTTTAGTTCACATAAGAAAGGAAGTCTACGAACGAACACAAAAGATGCGATCATTACGAGGAGCAACTTGTGTACCAGATCACTCAACAACTTACAGGATCACTGTAGAGACTGGGTGCAAGTCGAGAGCTGGCACTGATGCAAACATTTCTGTCTCGTTAACTGGAACGAAGGGTAAAACTGGCAGAATTGCTCTTAGCTCCTGGCGCAATGATTTTGAGGCAGGAAACAAAGATGTATACATTGTGAAGGCTATGGATGTGGGAGCCGTTCTAATAATAAGACTTCATAACGATAAGAGTCGTTGGATTGAGAACCCTGACTGGTTCGTTGACAGAATCGTTGTGACCAGCTCTACACAAGAGAAGGCTTTCCTGTTTCCGTGCTATCGCTGGATAGAAACTGATCTGGTAATTTATCAGGGAGAAGCTTTCCTTCCATTTGAAGTTCAGCCTGAGGCCATCAGGATTCGTCGTGTTCTGGAAATTGAAGAACGGCAAAAGCAGTATATCTGGGGTCGCCCTCCTCCTGGAATTGTCGACTTGCCTGGTTTCATAAACGCTTCAAAACATGGAGATCTACCAAGAGATTCTCAGCTTTCAGTTGAAGCATTAAGCGAGTTTGGAAGAAGTGCTCTGAAGGGACACATAAATCTCGGCCTTGCGTACCTTCGCACTGTTTTTGACAGTTGGCAAAACTTTGACAGTTTTAAGAAACTTTTCATGGGATTGACAGGCCGCGAAGTGCCCAGGCTTTCTCAGGATAACTTATGGATGGATGACCGGGTATTTGGTTACCAGTTCCTCAACGGTTGTAACCCATGCGTCATTGAAAGGTGTGATGAATTACCCAAAAATTTTCCTGTTACGAACGACATGGTCAAGGACTTCCTCGATCGAGGAATGGATTTAGAGAAAGAAATCAAGGTAAACTGCAAATGATGTAAAATCAACTTAATTATTCTGAAGAACCAAGAACTATCAACTCGCAAACATTTTATCGCTTTTAAAGTTTCCGTAGTGCTTGAAGATCGAGATGCAAATTTCTTGACAGCTAAATAAACTTTCTGCGCTGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O16025	Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla OX=47982 PE=1 SV=1
P12527	Polyunsaturated fatty acid 5-lipoxygenase OS=Rattus norvegicus OX=10116 GN=Alox5 PE=1 SV=3
P51399	Polyunsaturated fatty acid 5-lipoxygenase OS=Mesocricetus auratus OX=10036 GN=ALOX5 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000519 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013819 all species →	Domain	Lipoxygenase, C-terminal	Interproscan
IPR000907 all species →	Family	Lipoxygenase	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR036226 all species →	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR020835 all species →	Homologous_superfamily	Catalase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771 all species →	LIPOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0034440 all species →	Biological Process	lipid oxidation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0198.g34.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.