Detailed information of amic_s0199.g59.t1 in Acropora microphthalma

Genomic Location: sc0000199_pilon:735749...737830
NR annotation: XP_029179400.2, paired mesoderm homeobox protein 2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E7FDX5Transcription factor LBX1b OS=Danio rerio OX=7955 GN=lbx1b PE=2 SV=3
O75360Homeobox protein prophet of Pit-1 OS=Homo sapiens OX=9606 GN=PROP1 PE=1 SV=2
Q3LU41Homeobox protein prophet of Pit-1 OS=Theropithecus gelada OX=9565 GN=PROP1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0011711 (this species only)
Transcription factor familyHomeobox · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR050394
all species →		FamilyHomeobox NK-like transcription regulatorsInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24340
all species →		HOMEOBOX PROTEIN NKXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154
all species →		Biological Processcell differentiationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0199.g59.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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