Detailed information of amic_s0199.g79.t1 in Acropora microphthalma

Genomic Location: sc0000199_pilon:1007976...1019690
NR annotation: XP_044182309.1, dnaJ homolog subfamily C member 2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4R8H2DnaJ homolog subfamily C member 2 OS=Macaca fascicularis OX=9541 GN=DNAJC2 PE=2 SV=1
Q1RMH9DnaJ homolog subfamily C member 2 OS=Bos taurus OX=9913 GN=DNAJC2 PE=2 SV=1
Q99543DnaJ homolog subfamily C member 2 OS=Homo sapiens OX=9606 GN=DNAJC2 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006107 (this species only) · gene tree & orthology
Transcription factor familyMYB · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00249
all species →
Myb_DNA-bindingMyb-like DNA-binding domainDomainInterproscan
PF16717
all species →
RAC_headRibosome-associated complex head domainDomainInterproscan
PF00226
all species →
DnaJDnaJ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036869
all species →
Homologous_superfamilyChaperone J-domain superfamilyInterproscan
IPR001623
all species →
DomainDnaJ domainInterproscan
IPR009057
all species →
Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR044634
all species →
FamilyJ-protein Zuotin/DnaJC2Interproscan
IPR001005
all species →
DomainSANT/Myb domainInterproscan
IPR017930
all species →
DomainMyb domainInterproscan
IPR032003
all species →
DomainRibosome-associated complex head domainInterproscan
IPR017884
all species →
DomainSANT domainInterproscan
IPR018253
all species →
Conserved_siteDnaJ domain, conserved siteInterproscan
IPR042569
all species →
Homologous_superfamilyRibosome-associated complex head domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43999
all species →
DNAJ HOMOLOG SUBFAMILY C MEMBER 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0006450
all species →
Biological Processregulation of translational fidelityInterproscan
GO:0030544
all species →
Molecular FunctionHsp70 protein bindingInterproscan
GO:0043022
all species →
Molecular Functionribosome bindingInterproscan
GO:0051083
all species →
Biological Process'de novo' cotranslational protein foldingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09522DNAJC2; DnaJ homolog subfamily C member 2-Chaperones and folding catalystsko03110deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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