Genomic Location: sc0000199_pilon:1007976...1019690
NR annotation: XP_044182309.1, dnaJ homolog subfamily C member 2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families
| CDS |
| amic_s0199.g79.t1 |
| Transcript |
| amic_s0199.g79.t1 |
| Protein |
| amic_s0199.g79.t1 |
| UniProt accession | Description |
|---|---|
| Q4R8H2 | DnaJ homolog subfamily C member 2 OS=Macaca fascicularis OX=9541 GN=DNAJC2 PE=2 SV=1 |
| Q1RMH9 | DnaJ homolog subfamily C member 2 OS=Bos taurus OX=9913 GN=DNAJC2 PE=2 SV=1 |
| Q99543 | DnaJ homolog subfamily C member 2 OS=Homo sapiens OX=9606 GN=DNAJC2 PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006107 (this species only) · gene tree & orthology |
| Transcription factor family | MYB · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00249 all species → | Myb_DNA-binding | Myb-like DNA-binding domain | Domain | Interproscan |
| PF16717 all species → | RAC_head | Ribosome-associated complex head domain | Domain | Interproscan |
| PF00226 all species → | DnaJ | DnaJ domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036869 all species → | Homologous_superfamily | Chaperone J-domain superfamily | Interproscan |
| IPR001623 all species → | Domain | DnaJ domain | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR044634 all species → | Family | J-protein Zuotin/DnaJC2 | Interproscan |
| IPR001005 all species → | Domain | SANT/Myb domain | Interproscan |
| IPR017930 all species → | Domain | Myb domain | Interproscan |
| IPR032003 all species → | Domain | Ribosome-associated complex head domain | Interproscan |
| IPR017884 all species → | Domain | SANT domain | Interproscan |
| IPR018253 all species → | Conserved_site | DnaJ domain, conserved site | Interproscan |
| IPR042569 all species → | Homologous_superfamily | Ribosome-associated complex head domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43999 all species → | DNAJ HOMOLOG SUBFAMILY C MEMBER 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006450 all species → | Biological Process | regulation of translational fidelity | Interproscan |
| GO:0030544 all species → | Molecular Function | Hsp70 protein binding | Interproscan |
| GO:0043022 all species → | Molecular Function | ribosome binding | Interproscan |
| GO:0051083 all species → | Biological Process | 'de novo' cotranslational protein folding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09522 | DNAJC2; DnaJ homolog subfamily C member 2 | - | Chaperones and folding catalysts | ko03110 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |