Gene detail

Detailed information of amic_s0200.g19.t2 in Acropora microphthalma

Genomic Location: sc0000200_pilon:332018...338735
NR annotation: XP_029198535.2, T-box transcription factor TBX19-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0200.g19.t2

GACCGTTCAAGTGTGGAGTTGATAAGCCTCGAGAATATACTTCATTTTTTATGACTTAAAGTTGATACCTTGTTGCAAAAAGGGATTTCTCTAAGCAAGGGATCATAGTCTAGGAAGTTTAAGACGTTTTCAAAGGAGACCTCGGAACAAAACAGTCAATGGGCTGTAACAGCTATTAAGACTGTTCAGATGAAGGGACGCATCCTAAACAATTAGAGAATAATACCAATCTTAGGTGTGATAAATTGTATTCAAATTGATTATTTCCTGTTCTGTTAAAAGGCGTCCTCAATTATGAGCTACATTTATTTTGATCGTTTGTCTTTGGTTATAAGTTAGGTCTTTAACTTCTGCGTTAAAATTTCATCCTGATTTTAGGGTTTCTAAATTTACTCGAGCAATAGTTTTCAGTGTCAATTGTGAAAATGAAGTTCGTTTCGGAGTCGCCCGAGCAGATTCCAATAGACACGGCCTCCAAAAACGCGTGCCCAAAAGTTGTTTTAATCGAGTCATGTTCTCCACGGGAGGAAAGTTTAAAGCGGGCACCAATTGCGCGAAGTCGGAATTTCAAATCCACAAGATCTCTCGGGAAACGACGAAAGCAGAATGCACCGAGTCGCTTGACTGGAGGAAAAGCAGCTATGGAGGGCGAAGGAAAGACAATTTCAGCGCGTCTCAGAAATCCCGAGTTATGGCAAGTGTTCCACGAAGAGGAAACAGAAATGATTATCACAAAGGCTGGAAGGCGCATGTTTCCAGTCCCCGAATTTTGCTTGTCCGGGCTCGATCCAGGGCAGTATTACGGCTGCGCAATCGAGGTCATTGCGGCCGATAGCTACCGATATCGACACAAGTCCTCCGAGGGATGGCTCTGCTCGGGCAAAGGGATGCCGGTGAACCAGTCACACAGCAAATATCTGCACCCCAACTCCGCCAGTCTTGGGCAATACTGGATTCGCGAGGGAGCCATATTCGACAAGCTGAAGTTATCCAATCACATCCTCCCAACCGGTGGAAACATTGTCTTGAATTCCATGCAAAAATACCGACTGCGTCTTATTGTAACCAAGCTGGGAATGCATCATTGTGATCGTTGGATGTTCGACTTTCCAGAGACCCAGTTCATCACGGTTACCAGTTACCAGAATCCACGAATGACGCAGCTGAAGATTGACAACAATCCATTTGCCAAAGCGTTTAGAGAAGGAAAGAGGTACGCCATTTTGGTTTTTACAGAGAATCCACGAATGACGCAGCTGAAGATTGACAACAATCCATTTGCCAAAGCGTTTAGAGAAGGAAAGAGGGCAGGCAGACGTGACAGCGGAGAATCAAAAGCAAAGAAAAGAAGGATCCGCTTTCCCTCTCCACCGCCCATCATTCGTTACCAGACTCCCTTCATCAGCTTTCTGAGCAACCAAGACCAACCATCATCTCAACAAGCCCTTCCTCCAATTCCGCCACCGCCGCCACTGTCACATGACTGGCCCGAGGAACCACTATTGGCTAGAGGCATTCCTGTTCACAACGCAGCCGACTTTCCATTCAGTTCTTGGGAAAGGGAGGAATCCATCGCGCCAGCCCAAGCAGTTTCATCCATGAATTCCAGCTTTAAAGTTGACGTCAGTGGTCCTTTTCAGTGGCGTGAGAATTTTCCTTTCCCCTTCCAGGAACTTCCTGTCGCAGAGGAGATGCCATTTCAGCCGCAACCACAGTTTCCGACACCATGCTACCCGGTGGTGCCACCACCCACGTCCGCTTTTGGTTTGTACGAGGATGCGCACGCGCAGTTGCCACACCATCTTTCACGTGATCCATTTTGGCGAGAAATTTAGAGGGGAAGCTTTTCGATTATTTCGTCAAACGAACCCAACCTATTTCCTTTGTCGCTAAATTGTCAAAAATTCACCCTTTCCGGGATAAGTCACACTTATGAAAAAGACTGTAAAATTTAAGCGATTAAATTCCCGTGTTATGGCAAACATCGCATTTTTTTCCCGTTTCCAATTCTTTAGTTTTCGAAGTCAATTTTTTCCCATTCTGGCTCTCCATCGTCCCCCATCTAATCTGAAAAGTCGATCATTGCTTTCAGCGTGTGGTGTTTTAGCATTTCCTTGAATTAACATTGTCTTGACTCTTTCCCAGTTATCAATTGAATGCTAATCTGGCGTAGCAATAAGAATCATCGAAATTAATTGTTACGATTCAAAAGGAACCTCCAACTAAGTTTTATAGGTGTGTGTCAAGTATTTCGTTTACCAAAAAGTGCCTTGTTTATAAGTCTTTGTAGGAATTTTCTCGTTTCTTGTTTTGAGAAAAACACAAATGTTGTAGACTAATACCAGAACACCTTCAAAAGAGAGTTAAGTTATTTGCTTCTGTTATAAATTTCAACATTTTGACGAAAACTTACAGTCTGAATAAAACTGATGTGTGGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P57082	T-box transcription factor TBX4 OS=Homo sapiens OX=9606 GN=TBX4 PE=1 SV=2
P70325	T-box transcription factor TBX4 OS=Mus musculus OX=10090 GN=Tbx4 PE=1 SV=3
Q861Q9	T-box transcription factor TBX4 OS=Canis lupus familiaris OX=9615 GN=TBX4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009955 (this species only)
Transcription factor family	T-box · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907 all species →	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046360 all species →	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR036960 all species →	Homologous_superfamily	T-box superfamily	Interproscan
IPR018186 all species →	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR001699 all species →	Family	T-box transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267 all species →	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10180	TBX6; T-box protein 6	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.