Gene detail

Detailed information of amic_s0200.g24.t3 in Acropora microphthalma

Genomic Location: sc0000200_pilon:366357...376755
NR annotation: XP_044176947.1, protein O-mannosyl-transferase 1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0200.g24.t3

AATGTTTGCTGTTTTACAAAAGAGTGGGCCACACGATGACATGATGTCCAGTGCTTTCCAAGCAAGTCTGGAGGGAGGATTGGCTAAAGTTACCCTTGGACAAGCCAATGATGTGGCTTATGGATCTCAAGTCACACTAAGAAACACATTTGGAAAGCAATGTTGGTTGCATTCTCACGAACACACCTACCCTGTTAAGTATCCTGATGGGCGTGGTAGCTCGGCACAACAGCAGGTCACGTGCTACGGCTTCAAGGATGTTAATAACTGGTGGATCATTAAAGACCCTAGCAGAGTATCTCTTGCAATCGATTATCCACCGAGACCTGTGCATAATGGTGATATCATTCAGATTGTCCATGGGGTAACTGGTAGAGCCTTGAACAGCCACGATGTAGCTGCTCCGCTAAACCCAGCCAACCAGGAGGTGTCCTGTTATATTGACTACAACATTTCTATGGCAGCCCAAAACTTGTGGAAAGTGGATATTTTAAACCCTGACGGAAGCAATATCTGGAAGACGATTCATTCTCAAGTCAGGTTAATTCACGTGAACACGTCACAGGCCATCAAGATATCTGGAATGTCGTTACCAGAGTGGGGTTTTAATCAGCTCGAAGTATGTACAGACAAGTCGATCAAACAAACAAACACCATCTGGAATGTTGAAGAACACCAGCAGAATATAACTTACCCCGAGGGACACGTTGCAGAAGATGAAGTTAATAAAACAGAAGTCCAAGAACTCGCCTCTAAACCCATGCCTTTCTTCAACAAGTTCTGGGAGCTACAGCTGAAGATGTTGGAATCCAAAAAAGAACTTACAAATGAACACACGTTTGGTTCTCGTCCTTCGTGGTGGCCTTTAATGAGACGAGGAGTTGCGTTCTGGATTGCAAAAGACACAAATGCCCAGATCTTTTGCATTGGAAATCCTTTTGTTTGGTGGGCGACAACCCTTTCGATTCCAGTCTATTTTGGACTTTTAGTGTTATACTTATTAAGGAGGAGACGAAAAGTACACGATTTATCCGATGCTTCCTGGAATCAGTTTGTGTTTGTTGGAGAGGCCGTGGTAATAGGTTATTTACTCCATTTCATCACGTTTTTTCCCATGGAGAGGACGCTATTTATCCATCATTATCTGCCCGCGTTGTTCTTTAAAATTGTGCTGTTACCTGTTCTGATGGAGCATGTTCATCGAAACGTCCTCAAACTTAAAGCATTGCAGTGGATGCTGTACGCTTGTTGTGCCTTGTTCATTGTTATCGTCCTTTGGGGATTTCATTTCTTCAGCCCATTCACATACGGCAGTGTGGCCCTCTCATCGATAGAAGTTAATCAACGGAAATGGCTTAACACATGGGGAATGCTCTCTCACCCGAACACGTGACACGACTCGTATCAGCCTTCCGTTGAAAATTCGGGAAATCGTAGATAACAGTGGGATGACAGCGCCGTGACCAACATGAAAAGCGCCAACATTAACTTATGTGGGAACCTTTAACGAGCTTGAAAGCGGCCTTGGAAATTTTTTAAAAATTCTATCTCAAGTTACTCGTTGGTTAATCAAACAAAGCAACATTTAATTAGAACAAAATCTTTTTTTTTTTTTGTTTATTTGACTTGACGTAACGCTAAAATGCAAGTCCCCTGTTCCATGGGGTGCCTCTGCACTCGTAACTAGGGCCATTAACCGTTGGTCAGAACTGGCCGGTCGGATCGCCCAGTGCGCCAATGCAACATATTAGTGCTGCCGAACTGAGAGCTGTTTCTGGACAAACTGACTCTGTGTTACATTTGCGCACAACCCCACAGaccactttcataaatggcggtgtagttgttatccctttgtatttcttaatgatacctactcgcctcattttgatttaaatattcttttgaattttgcccatggcagcgaggttagaaaaGCTTATTACcattaaaacataagacaatttaaagacttaaattaatcgccattatgaaagaggtctatGTGGCCGGCCCGTTTTGATAAATGGTAAGGGCTCAAGCTTTAACAATTATTGTGATATTTTTATAGTTCGAGAGGGTGTTTAGCGTTAACAAAATAACGTGCAAGTGAAAAATAACAGATTTACTCCTCAGCCCCCACTGAAGAGGCCTAGAGAGTAACACAAATCAGGCGACAATTGAAAAGCAAAACAAACCTCTCATTTCACTCAGTTAGGACCTATTGACCACATAGCTACTCTTAAATATGTAAATAAAAATAAGATTCTCTTTGATTGGAGCCTTATTTAAGATGGAAATACTGGCTAAAATGAACTCGTGACAATATAGTCAGGTCAACACCATTTTAATTTGTATTAAAGAGCAATGGTCTAGTTCAACAATAACTATAAGTTAGCATAGTTCTTTACAAAGGAAATCAGAGACTTCTTAAATCATCTCTTTCCCGGAGAGGTGTGGCTCGGATGACAAAGTAACGTTTCCCAATAGTATGCCTGTATTTTTTTGCAAAAACAACTCCTGTCGTTTCATTACCCAGAAAATCAAGAAAAAAACGCATTGCAAACTAGCGGGATTTAActttgaagtaacatgtaaaacacgaggaagagtgtttaaacagcatttccaaactctaagaggattgaaaaaacgaggcgtagccgagttttttttaaccaagttcgacgtgtttggcaatctgatgaaacactcttttactgtgtttgatatagcttctcaaagcaataataataattgtgagagaaagtcaaagcaaaagttcaccgaattctataataattagggtcacatatccaaacctctttcacggtaatgtttcctttgttttgcaatcatgagttattaatgaatttgagaaGATGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1QF89	Protein O-mannosyl-transferase 1 OS=Danio rerio OX=7955 GN=pomt1 PE=1 SV=1
Q9Y6A1	Protein O-mannosyl-transferase 1 OS=Homo sapiens OX=9606 GN=POMT1 PE=1 SV=3
Q99PR0	Protein O-mannosyl-transferase 1 OS=Rattus norvegicus OX=10116 GN=Pomt1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001322 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16192 all species →	PMT_4TMC	C-terminal four TMM region of protein-O-mannosyltransferase	Family	Interproscan
PF02815 all species →	MIR	MIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016093 all species →	Domain	MIR motif	Interproscan
IPR032421 all species →	Domain	Protein O-mannosyl-transferase, C-terminal four TM domain	Interproscan
IPR036300 all species →	Homologous_superfamily	Mir domain superfamily	Interproscan
IPR027005 all species →	Family	Glycosyltransferase 39-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10050 all species →	DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004169 all species →	Molecular Function	dolichyl-phosphate-mannose-protein mannosyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0200.g24.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.