Gene detail

Detailed information of amic_s0201.g24.t1 in Acropora microphthalma

Genomic Location: sc0000201_pilon:375166...393969
NR annotation: XP_020608323.1, nostrin-like [Orbicella faveolata]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0201.g24.t1

CGAAGCTGAGCAAGGGTTATAACAGTCCGGAAATTACAATGTTTTTAGGCATGAAACAGGTTGTATAAGACCATTCAAGCCATGACCAAGTTCGAGGATTCTTTTTGGGAACAGAAAGGCTACGAGGAACTTCGCAAATTATGTCGTCAAGGCAATGAATTTTGTAGAGATGTTTCCAGTATATTCAATGAAAGGTCCAAAATAGAGCAGTCATATGCTGATAACCTAAGCAAACTGGCTCAAAAAGCCCAGAAAACATCAAAGGATGTTATTGGAACACTTAAGTCATCTTGGGAGAGCACCATTCTTGAAATGGAAAAAGAAGCTGAAATTCACAGGAGCTTTGGTACACAACTTCATGATGAAGTGTACAGACAAATCAAAACTTTTGTGGAAGCCCAAGTAAAAGCACGAAAATCTGTTGAAGCGCTTGTAGACAAGGCTTACAAGAATTTTTCTGACAAACAGAGCGATGCTATGAAGGCAAAGCGGAACTCTTACAGCAAGACCAAGGAGGCTGAGACTGTTTGTGAACAGATTGAAGAGGCAAGAAGTGGAAGAGGGACCAAAACTTTGTCTGACAAAGATATCGCCAAGTTGGATTCCAAGAGCAGGAAATTAGCAGACAGTTCAGTAAAAGCAGATAGAGAATATCGTGAGCTGTATGAAAAGACTGAGAAAGCAAGGCTTGAGTGGGATACTGCAATGTTAAAATTCTGTAAGACTAGTCAAAAGTTAGAAGAGGAGAGGCTAACACATCTACGTGAGATGTGTTCTTTGTACAGCAACATGTTGTCAGCTCTGGTACCTCAGCTGCAACAAAATTTTGACAATGTTGGAGGTGAAGTCTGGAAGATTAATCCATCAGAAGATGTCGTCATGGAAGCAAATGTAAGAGGAGAACCAAGAGGCCCTTCAGAGCAGATACTCTATGATTGTTATGAAGAGGACTTGGAAATGCGTATGAACTTTGAAAGGAGAAAAATTGGATTGGAAAGAAAGATAAAGCTGCTGTCAGAATCATTGACAAAGGAAAAGAAAACAAGGGCTGGAATACAAACCCTTTTTGAAGCATACACTGATACTCCTGATTATTGCAGCGAAGAAGGACAACAAGATGTTGCCACACAGCTTGAGCATGCAAATGCAATTATCAACAGTTTATCGGCAAGCTTGGGGAAAGTTCAAGGTGCTCTGGCTGGACTGAACGGCCAAAGCAAACCACAGCTTTGGCTAATGACATATGTGCAGACCATCAAGGACAAACAGGGAATCTTGCAGAGTGTTCTTAGGATTCCACTTGATCAAGTCACCAGAGTAGATGTCAATTCACAGGAAGGAGATGATAGGAGTGACGATGAATTTGACGATTTCCCTGATCCACCATCAGTTTCAATTCTTGGCCAGTGTCGAGCACTCTATGAATACAAGGCTGCTCAGAGTGACGAACTTGATCTTAAACCAGGCGATGTCATCACATTAACAGCAAAGTTGGAAGGTGGCTGGTGGGAAGGAGAAATGGGAGATAAAAGTGGAGTATTCCCTGCAAGCTATGTGGAGGAGATTCAATCACCCTATTGAAGGCTGACGATGTAGAAGTAAGAGAAGCAGGTTGCAAATGACCATGTGGAAGAGATCATGATTTGGTGGTAACAACATCAAAAGAATGTTTCAGATTCTCAAGTTCAATGTTAACTGTTTATTGCATTTTCAAGAGACTATTTACATAGAGAGTTTGAGACCTACCGAGCCCTATGTAAATTAAGGATCATCTTTTCCTTCCGGTTTTACCATATAAAGTGCCTGTGCTTTGCATCCTGTATCTTTCTGGTGCCCTGCTGGCATGGTTTCATTTTGCAGTCTTATTTTCTTTATAGAGTATTTATTTCACATTGCATCTTGAACTTACAAGAGATTGCCATGTGTGAATAGGTGTCAAACTCTGATTTAAGAGGTGTTTAAAATTTTTGTTGTTACTTCAGTGGTAATGTGCTAACCTTCAGAAAGATTTGAAGAACGTTTCTCTATAAAAGTTAAATTATGAAGTCTCTGTGGAAACGTTTTATTATCAAGCACAATTTTTTATCATTGTTAGTTTGTTATTTAAGGCAACTTCAGAGAGTGATTTTTTTTATAATTGATTAGAAGATTGGTAAAGCTGGCTAGGCTAAGAACAATGAAAAAAGTAAGAGAATTAATATTCATTATTACTGAACTCCTCACCAGGGGATGGAACAAATTTTAATAAGGATGTATTTTTTGAAGCATTTTATGGTTTTTTATTGCAAAAACATTATTTCAATTTATTTACTAATTTCTGGAGCAGAAAGCCCTTGTTAAAAAAGAATAAAGAGAAAATTTGGGACAGAGATGTGCATTATTGTCTTATTGCAGAAGAATTTGTGATCTGCAAACCAATGATATTTGCCTGTCGTGTCAGGATTGGGTTCAAAACCATTGGTAGAGCACACCAAATATTGATCCATCTGCTCAGCTGGCATCAAGGCAGAGGACGGCATTGTCAAAACCTTTCTTGGAGTTTAGGAATAACTGGTCTGAAACGAGGAAACTGCAATAAATTAAATTTTTATCCAAGCTATTAAACGATGACCACAGCATTGACACACTACATGGAGGCACAGTTTCTCTTctgggcccagttgtttgaagcccaactaagctaattctaggttaccataaaattttaattgctattttatttactgctaacacaaaattgtggcccatttaggttataaattacaaatgtcttttccttaatctcatgaaaaatcctactttaacattaaataaatatcaattaaaatttacactagcctaggattagcttaatcgagctttaaacaactgggtcCCAAGGTCTATTGGTTTTGTTTACATTTCAGGTAGTTCCCCTGTCTGCTTGCTAGGGTTTAATACCACCAAGTAGGgttaacgatttatttacaaaatttggttttatcaaacgagttgataaaggttgagttaccac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6YKA8	Protein E(sev)2B OS=Drosophila simulans OX=7240 GN=drk PE=3 SV=1
Q08012	Growth factor receptor-bound protein 2 OS=Drosophila melanogaster OX=7227 GN=drk PE=1 SV=1
O01498	Signal transducing adapter molecule 1 OS=Caenorhabditis elegans OX=6239 GN=stam-1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005407 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23065 all species →	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0201.g24.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.