Gene detail

Detailed information of amic_s0201.g33.t1 in Acropora microphthalma

Genomic Location: sc0000201_pilon:480586...514099
NR annotation: XP_044179102.1, uncharacterized protein LOC114952170 isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0201.g33.t1

CAGAAAGTGGCTGACACATGATTGCTAACCCCTGTGAGATGCAAAAAGATTTTAGAGTTTGCCTCGTGAAAGCCTCTTTGCTTTGGTCCTTGGCGTTTCTCTTTGTGAAAGatgtgtcatccgccagttacccacaatgctacatcatgggaaaattgactgcttgtccgaataacgaagagacggtcgacccaaattccaccgtccccttcaactgctcaatcgaaaatgtcggaacatcaaaccaaaacacgacatggaagcaggtgtatgatttgaagacacccaaaaagtgcttggttttgaaaacaggaaattcggagacacgtatatatttggcaaGAGAACTGGAACTTAAAATCAGTTCCTATTCTGTGGAAATCAGCGAAAACAAGGGAAAGAATTTGAGTTGCGAGTTTACAGGAAGACCTCGACCGCAGATAGTTTGGGATAAGGTCAACAATTCAACTGCAATCAAGGCGGTGATCACGGAGCGGGAAACACAACACAAAGATATCTTGATTACTACCAGTACTATCTCTATTCCGGGCCGCTCCGAATTCAGGGGCTTTTACACATGTAGTGCAACAAGCAGGTTGGACAGTGGATGGTCGAGTACAAAACAGGACAATATTGAAGTGGAATTTTCTTGTCCAACAGGAAAAATAGAAGCCAAAGGGTCTCGGCATGTAGAAACGAACGCCTTTGAGAACATCAGTATAAGTTGTTTTGTTAACGAGCAGGCTGAGTTGGGATGTGATGCATTCGTTTGGCATTTCAAGAACAAGACATTAAAAACGGATGGAAAGTATAGGATAACAAAATTCGAAGACATTGGAGACTATTGCAAAACAAGATTCAAACTTGAAATTATCAACGCGACGGAGAATGACGAAGGAGACTACCGTTGCCAGCAGTCAAAGTGCCTCCCTAAAACTTGGGATAGTTCTGATATAATCGAGATAAACGTGCGCCCGCCACCAGAAAATGAGCCTTGCAATTCCCACAGCAATTGTACCGAGTTAACGGCAGGAGACGCGAAAGGTTCCAAAAAATGGATGATTCCAGTTACCATCTCGTGTTGTGGGATCTTTGTTCTTCTCATTCTATTCTTTGTTTTGTTCGTCAAGAAAAGGAAGACATACAAAAGCATCAAACACTATATGGGAGATGTCGTCGAAAACGAAAAAGTATTTATCAGTTACAGCTCCAAAGATTTCAACTGGGTCACTGAAAATCTGATCTCTCCTCTTGAGAAGCATTCCATTCCTTACAGCATTCACAACAGGGACTTTGAACTGGGAAGACCTATCGTTCAAAACATGGCAGACAGCGTGTTTAACAGCCGTCAAGTGTTGATTGTTTTGTCGAACAACTACCTTGCCAGCAACTTTTGCCGGGAAGAGCTGAAGATGGCCCTACAGAGGGGGGTTGACAAGAGGGATTCCTCTGTGACTCTTGTGACCATCGACAAGTTGAAGAAAACGCACTTGCCAAGTGAATTGAGAAAAAAGAATTTGCTGGATTTCGAGAAGCATCAGAGGAGGCAAGATTGGGAGAAGAAGTTGATTAAAACTGTAAATTGGAGTGAACTTGTCTCAGCTTAGTGAGGTTGGGCTGAACCTTGACAGCTAGTCGTAGTGAAACTTTGGCTGATACGTGTAACttaaagtgtcaccagcccccaaaatctttttcacataagcaaactttcgctactgcccagattactttggtgaaaaagttttttggctctggacttttcctttttaaagtaaggaagttgggcgctttttttacccatagattacaatacaggagaatgggtctagtttaccttgtgacgtcatctcagtgtttcattcacacgcgaaacaagaacaaatagagagagagtgctatctttttttacaaaatgcctgattagtgtattgtttttggatgtaacatcaaaagtgaggcagaaaatggcagagctttgcacaaaatacccttttttactcaccatcgcccggagtgagtgagaagaaggaaaaaaaatggatcgattttgcaatctctcactgtttatgcttgtttctcaccttttttatgcttgtttcgggggcgaatgaagccctgacataacttcctaaagtaaactagaccctttctcctctattgtcgtccatgggccaaaaaagcgcctgacttccttgctttcaaagagtaaaacatctgaaggaaaactccagggccaaaaacttttttgccgtagtaactgagggcagtggcgaaagtttttttatgcgaaaaaaaattttgcggagttagtggcactttaaAGCGAGCTGTAGGTTGATTTTCTCTTCACAGAATTCCGTAGTGTCAGCAGCTTTCGTCCGTGTTAGTTTCCTGAAAATTGTGCAGGTTTGTTTTTGTTCGTGATATGAACCTGTTTGCAATAATACACAGTTTGCCGCAACGAATGCAAATTAAAAAGTTACGATTCAGAAGCCTGTGCACTGTTATGATTTCAGACTTCTCAACCCCAAACGATACAAAACCTGGAGATCAAGGTAAAAAACGGGAGATTTAGGGAAAATCCTGGAGATTTATAGACGGTGATGCAGTCCATCAAAATAAATTTTTCTTTTCTCTTTATCATCGTTTTCCGCCATTTTGACAAAGTGGACAGAACTTATCTAGTCGCGACAAACTGGTGAAGAGAACCTTATTTGGCATTTGTCATCTAAGTACGGTTGTGATATACGGCGTGTCGTGTCAACCAGTCGAACAAATATGACAAATATTCCTTAGAACTATGCATCTCTACAGCATTGGCGCCAAAAAATCAATGTTACAACGCCGGGTTAGAGCTAGTCTACGGGTCACCCTTTTGGGTAGGGTTAGAGGGGATACAGTTTTTGTCTCCTCGAGGAGTGAAGTTAGGAGCCTAATTTATGACCTTTCTTGTCCATATTTCTTACCACAAGTGATGGTGAAGATAAAAAAGACAGTTGAGGAGACACTCTGCGACGATTATTGAAGTCAGTGCGCATCCAATTGCGCACGTTTCAGAGGGGGGGAACTATTTCCTAGGGCATCTGAGTTCGCTGGCGCATTGGTAAAAATGGTCCCAACAAATACAAATGAACCCCAGAGAGGATGGGAGATGGCCTTACAGCACCCGAGGTCCGTCACATTGAAGCCCAAGTGATTAAACCGCTCATCTGTTTCAAACAAACAGCTATTTGTGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6R5N8	Toll-like receptor 13 OS=Mus musculus OX=10090 GN=Tlr13 PE=1 SV=1
Q9V477	Toll-like receptor Tollo OS=Drosophila melanogaster OX=7227 GN=Tollo PE=1 SV=1
P08953	Protein toll OS=Drosophila melanogaster OX=7227 GN=Tl PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017241 all species →	Family	Toll-like receptor	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24365 all species →	TOLL-LIKE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002224 all species →	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0006955 all species →	Biological Process	immune response	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0201.g33.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.