Gene detail

Detailed information of amic_s0201.g5.t1 in Acropora microphthalma

Genomic Location: sc0000201_pilon:64774...108795
NR annotation: XP_029193745.2, semaphorin-5A-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0201.g5.t1

ATGTTCCAAAGCTTAATCCACAATTTTGACAACACTGACAAAGGTACATGGTTTGACTTTTTCCAGAGGACAACTTTAGGCGAAGCTCCAGAAAGCAATCAAGGATACGTATTCAAGTCTAACGAAAAATACAATGCACCAAGTTCATCACCAGATCAGAATGATACAGCCATTATCACAGAGGATGGCACTCTCTTTGTTGGAACATTTCTGCCCATGGGAAACTATTCAATAATTTACAGCAAAAGGTTCAAACATCCCCAGCTGCAGGAAGTCTTCTCTGCGACGCCGAATGTAGATTTCGTAAGGAGCTTTGAAATTGGCCGTTATATCTACTTCTTTCTCCGCGAACGATCCTTGGAATGCTCCAGTTGCGGAAAAGTTAAAACGTCCAGGGTAGCAAGAGTGTGCACGGGTGATCGTGGTGGTGAATATCGTCTCTTAGATACTTTTGTAACCTTCCAAAAGGCCAAGTTAATGTGCAGTGATGGGAAGAATTACGCACTGAATTTTAATGAAATTCAGGATGTTTGGTGGGACAATCGTACAGGCCGATTTTACGCAGCCTACAGCTCTCAGCCGAATGGTCCTGCGATATCGGCTATTTGTATTTACAGTTTGTCATCAATCAATCGGATTTTCATCAAAAGTGATTTCAAATCTTTCACAAGTGAAACTAAGGGTTGGACCCAGAAAAGGAATAACATTGAAGAATACTTTCCAGGGTGCAAAGTGAATCCGAAATACCTCAAAAGCTCTTATTCGGCGGTTGCTGATGGCGTGATGGCTACAAAAGATATGCTGCCATCAGCTTACGGAGACCTTTCACATGGTCCATTAATGGCTGATGGAGTGGAGCCTGTTGGATCGAAAGCTTGGTTTATTAGAAACGGGATCAGAATGACTGGCATTTCCGTGGACGTCGTTGGGCTGAATATCGTGGTGTACGCTTCAACAGATCGAGGATCTGTCGTGAAAATTTCACAGCCGTCAGGAATCTCTCAGCCATGTCTCTATTCTGAAATGGAAGTTTATCCTTCGAACAAGAAAGAGGTTATCAAGACCATGGTGATTGATCAGGTTCGGcaatttgtcgtagAGGTGTTGGAGATGACAAACAGTATAACCAAGATGAAGTTGATGCTATTGGCTCTTTGTGTCACGTCCATAGCAAGCCAGGAAGAGTCCATTTCATCTTATGAAGAGGTCAAGAGGTTTGTGAAAACGTTCAAGCCAAGAGGAATAAAAACAAGTACTTATTATCTACTCTCCATTGATAAAAAACACAACAACCTTGTTGTTGGGACAAGACATAATGCGTTCTTGGTGAACTTGGACGATATGGAAAGTTATGAGTCGTGGAATGTATTACAAAAGCGTGGAAATGACACTTTTCTCAAGTTGATGCTACCCTTTGGAGACAGAATTTTCCTCTGTTGGGTTGAAAAACTATTTACAAGAAGCTGCACTTGGAGAAATAGGGTAAATTTAGGCGAATCTCCAGAAAGCAATCAAGGATATGTGTTCAAATCGGAAAAAAAGTACATCGCAGTAAGGTCATCACCAGAGCAGAATGACACAGGCATTATCACAGAGGATGGCACTCTCTTTCTTGGAACATTTGAAAGTTATTCAGTCATCTACAGCAAGAGGTTCAAACAGCCTCAGCTGAAGGAAGTTTACTCTGAGAAAAAGAGTTTTTATGAAGATGTGCATTTCGTAAAGAGCTTTGAAATTGGCCCATACGTGTACTTCTTTTTCCGCGAACGATCGTTGGAATGCGACGGTTGCGGAAAGGCTAAAACTTCCAGGGTAGCAAGAGTGTGCACGGGCGATCGTGGTTACTTAAGGATCTTCAGTTTTTTTGTAACCTTCCAAAAGGCCAAGTTAATGTGCAGTGATGGGATGAATTACGCGCTGAATTTCAATGAAATTCAGGATGTTTGGTGGGACGATCGTACAGGCCGATTTTATGCAGTTTTCAGCTCACAATCGAATGGTCCTGCGATATCCGCTATTTGCATTTACGACTTGTCATCAATCGATCGGATTTTGAACAAAAGTGATTTCAAGTCTTTCATAAGTGAAACTAAGGGTTGGGCCATGAAAAAGAATAATATTGGAGAATACTTTCCAGACTGCAAAGTGAATCCGAAATACCTCAAAAATTCTTCTTCTGTGGGTGCCGACGGCGTGATGCCCACGAAAGAGTTAATCGTTTCAGCTTACAGAGAGCTAAAACACGATCCATTGATGTCTGATGGAGTGGAGCCTGTTGAGTCGAAAGCATGGTTCATTAGAAACGGGATCAGAATGACTGGTATTTCCCTGGACGTCGTTGGGCCGAACACCGTGGTGTACGCTTCAACAGATCGAGGGTCCGTTATGAAACTTTCACAGCTGCGAGGATTCTCTCATCCATGTCTTCATTCTGAAATGGAAGTTTATCCTTCGAACAAAACAGAGGTCATCAAGACCATGGTGATTGATCAGGCTCGGCATGTTCTGTACTTGGGGACACGTTATTCGCTTACACAACTGAGTTTGGATCAGTGTGAACGATATCAACACGACAAGAGTGCTTGTATTTTGGCTGCTGATCCTTACTGCGGCTGGGACAACAAAACATCGCTCTGTTCTTCTGTTCTTTCGGATGGAGAGAGACCGTTACAAGATTTGACAGTCTGCCCAAAAGGACGCAAAGAAACTAGCTGGTCTTCGTGGAGAACCTGTGTTCAAAGCGACGGAAATCTTTGTCGCTGTCAAACACGTCGCTGTAAAGAAAAGGGAAATACACCCTGCCTGACTGATGTGGAGGTCCGATTGGAAAATTGTACAGGCGTTTCGGGAGGACAGCAGGAATCTCAACCAACATCAGACGACTACAGCATTGGTTATCTAATTGCTGCATTTGTGGGCGGCATCACAGCTGCGGTTCTCGTGTTTTTGGTTTGGATTTCTTATAAGAAGTACAAAAATAAGAAGTCCCAATGA

Transcript

amic_s0201.g5.t1

cgtaaactgacgctcccatcctgttgctaaatcagccCATTAGCTGTTTATTGGCCTCATGTTCCAAAGCTTAATCCACAATTTTGACAACACTGACAAAGGTACATGGTTTGACTTTTTCCAGAGGACAACTTTAGGCGAAGCTCCAGAAAGCAATCAAGGATACGTATTCAAGTCTAACGAAAAATACAATGCACCAAGTTCATCACCAGATCAGAATGATACAGCCATTATCACAGAGGATGGCACTCTCTTTGTTGGAACATTTCTGCCCATGGGAAACTATTCAATAATTTACAGCAAAAGGTTCAAACATCCCCAGCTGCAGGAAGTCTTCTCTGCGACGCCGAATGTAGATTTCGTAAGGAGCTTTGAAATTGGCCGTTATATCTACTTCTTTCTCCGCGAACGATCCTTGGAATGCTCCAGTTGCGGAAAAGTTAAAACGTCCAGGGTAGCAAGAGTGTGCACGGGTGATCGTGGTGGTGAATATCGTCTCTTAGATACTTTTGTAACCTTCCAAAAGGCCAAGTTAATGTGCAGTGATGGGAAGAATTACGCACTGAATTTTAATGAAATTCAGGATGTTTGGTGGGACAATCGTACAGGCCGATTTTACGCAGCCTACAGCTCTCAGCCGAATGGTCCTGCGATATCGGCTATTTGTATTTACAGTTTGTCATCAATCAATCGGATTTTCATCAAAAGTGATTTCAAATCTTTCACAAGTGAAACTAAGGGTTGGACCCAGAAAAGGAATAACATTGAAGAATACTTTCCAGGGTGCAAAGTGAATCCGAAATACCTCAAAAGCTCTTATTCGGCGGTTGCTGATGGCGTGATGGCTACAAAAGATATGCTGCCATCAGCTTACGGAGACCTTTCACATGGTCCATTAATGGCTGATGGAGTGGAGCCTGTTGGATCGAAAGCTTGGTTTATTAGAAACGGGATCAGAATGACTGGCATTTCCGTGGACGTCGTTGGGCTGAATATCGTGGTGTACGCTTCAACAGATCGAGGATCTGTCGTGAAAATTTCACAGCCGTCAGGAATCTCTCAGCCATGTCTCTATTCTGAAATGGAAGTTTATCCTTCGAACAAGAAAGAGGTTATCAAGACCATGGTGATTGATCAGGTTCGGcaatttgtcgtagAGGTGTTGGAGATGACAAACAGTATAACCAAGATGAAGTTGATGCTATTGGCTCTTTGTGTCACGTCCATAGCAAGCCAGGAAGAGTCCATTTCATCTTATGAAGAGGTCAAGAGGTTTGTGAAAACGTTCAAGCCAAGAGGAATAAAAACAAGTACTTATTATCTACTCTCCATTGATAAAAAACACAACAACCTTGTTGTTGGGACAAGACATAATGCGTTCTTGGTGAACTTGGACGATATGGAAAGTTATGAGTCGTGGAATGTATTACAAAAGCGTGGAAATGACACTTTTCTCAAGTTGATGCTACCCTTTGGAGACAGAATTTTCCTCTGTTGGGTTGAAAAACTATTTACAAGAAGCTGCACTTGGAGAAATAGGGTAAATTTAGGCGAATCTCCAGAAAGCAATCAAGGATATGTGTTCAAATCGGAAAAAAAGTACATCGCAGTAAGGTCATCACCAGAGCAGAATGACACAGGCATTATCACAGAGGATGGCACTCTCTTTCTTGGAACATTTGAAAGTTATTCAGTCATCTACAGCAAGAGGTTCAAACAGCCTCAGCTGAAGGAAGTTTACTCTGAGAAAAAGAGTTTTTATGAAGATGTGCATTTCGTAAAGAGCTTTGAAATTGGCCCATACGTGTACTTCTTTTTCCGCGAACGATCGTTGGAATGCGACGGTTGCGGAAAGGCTAAAACTTCCAGGGTAGCAAGAGTGTGCACGGGCGATCGTGGTTACTTAAGGATCTTCAGTTTTTTTGTAACCTTCCAAAAGGCCAAGTTAATGTGCAGTGATGGGATGAATTACGCGCTGAATTTCAATGAAATTCAGGATGTTTGGTGGGACGATCGTACAGGCCGATTTTATGCAGTTTTCAGCTCACAATCGAATGGTCCTGCGATATCCGCTATTTGCATTTACGACTTGTCATCAATCGATCGGATTTTGAACAAAAGTGATTTCAAGTCTTTCATAAGTGAAACTAAGGGTTGGGCCATGAAAAAGAATAATATTGGAGAATACTTTCCAGACTGCAAAGTGAATCCGAAATACCTCAAAAATTCTTCTTCTGTGGGTGCCGACGGCGTGATGCCCACGAAAGAGTTAATCGTTTCAGCTTACAGAGAGCTAAAACACGATCCATTGATGTCTGATGGAGTGGAGCCTGTTGAGTCGAAAGCATGGTTCATTAGAAACGGGATCAGAATGACTGGTATTTCCCTGGACGTCGTTGGGCCGAACACCGTGGTGTACGCTTCAACAGATCGAGGGTCCGTTATGAAACTTTCACAGCTGCGAGGATTCTCTCATCCATGTCTTCATTCTGAAATGGAAGTTTATCCTTCGAACAAAACAGAGGTCATCAAGACCATGGTGATTGATCAGGCTCGGCATGTTCTGTACTTGGGGACACGTTATTCGCTTACACAACTGAGTTTGGATCAGTGTGAACGATATCAACACGACAAGAGTGCTTGTATTTTGGCTGCTGATCCTTACTGCGGCTGGGACAACAAAACATCGCTCTGTTCTTCTGTTCTTTCGGATGGAGAGAGACCGTTACAAGATTTGACAGTCTGCCCAAAAGGACGCAAAGAAACTAGCTGGTCTTCGTGGAGAACCTGTGTTCAAAGCGACGGAAATCTTTGTCGCTGTCAAACACGTCGCTGTAAAGAAAAGGGAAATACACCCTGCCTGACTGATGTGGAGGTCCGATTGGAAAATTGTACAGGCGTTTCGGGAGGACAGCAGGAATCTCAACCAACATCAGACGACTACAGCATTGGTTATCTAATTGCTGCATTTGTGGGCGGCATCACAGCTGCGGTTCTCGTGTTTTTGGTTTGGATTTCTTATAAGAAGTACAAAAATAAGAAGTCCCAATGAAACTTGCTGCTACTGTGCTGGTAATGAAAGCAAGTTTGCCATTCTTCCATCAGTGACTGACGAATTGCTTAAAATGGCGTATAAACGTAAAGTTTCCGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60519	Semaphorin-5B OS=Mus musculus OX=10090 GN=Sema5b PE=2 SV=2
Q9VTT0	Semaphorin 5c OS=Drosophila melanogaster OX=7227 GN=Sema5c PE=1 SV=3
Q24323	Semaphorin-2A OS=Drosophila melanogaster OX=7227 GN=Sema2a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001596 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR027231 all species →	Family	Semaphorin	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036 all species →	SEMAPHORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001755 all species →	Biological Process	neural crest cell migration	Interproscan
GO:0030215 all species →	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335 all species →	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499 all species →	Molecular Function	chemorepellent activity	Interproscan
GO:0048843 all species →	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0201.g5.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.