Gene detail

Detailed information of amic_s0205.g9.t1 in Acropora microphthalma

Genomic Location: sc0000205_pilon:289826...297924
NR annotation: XP_015750169.1, PREDICTED: uncharacterized protein LOC107330032 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0205.g9.t1

ATGGCTCTAAACTTAACTATCAACGATAAGAACCAACTGAAATGGTATGGCACTAAAGTTGAGCTGACTATATTTCTTACTGAGAGAATTCATCGCTCGACATGGGCCGCAGAGAACGTGAACTTTGACATAGCTTTCAATGGAACACTTGCTGTGTATAAACTTGAAGGCTTAACTCTGAACTTTTATGTGAGCACAAAAACGTTGCAAGTTCAAGGACGCTTGAAGGACAAATTTATTGAGGATATTAAAGACGGAATTACAGCAAGGGGGACTCAAGGACCAGCAGAAGAAGAGCACGTGCAAGTAGTGAACCAAGATGGCAGCCATCACCACCAAGGCGAAGCCGAAGTTGATGTAATAACTGTAGAATTGAGCAACAAAGAATTATCTTCGCCTGTCGATGGATCCGGGTCATCTCACTCCTCTTGTGCTTGCGAAGCGCCGCCGAGTCCAACTGATTTCATTTTGTTTTCGGAATTCTCAAAAGAAATCGAGAAAATTTGGTGTGAGGGAGATAAACAACCAGGGCAGTGGAGACTTCGTCGAGCATGCATCGAACAACCACCGGGAATCTCATTTTGTCGAGCAAGCCAGAAAAAGAAGAACCAAAGAAATGCACAAGTGAACAAAGGTACTATTTGTACTCGGCAAGCTTCACAACAATCTGTGCCAACCAAGAACTCTATCGAAGCTCTGGAGCAGAATGGCTTGCGTGAACCAACCAGCGTGGAATCAACAAGTACTAATACCACGGTAATCATTGGCGAATCGATGATAAAGCGCTTACAGTGTTGGAAAATTGCAAGGAAAGTCGGCCACAGGGTAGTTGTAAAGGAGTTTCCTGGAGCAACAACTTCTGACATGGAACACTATCTGAAAGCTGCTCTTGCTAAAGACCCGCAACAACTTATCCTTCATGTGGGAACGAATGATCTAAAGAGTAATTTAAGGCCAAATCCTGCTCAAATTGCTGATATCATTGTGGATTTGGCAAGAATGACTGGGAGTGAATCTCGAGCAGAAGTTATAATATCTAAAGCGATCACAAGATCAGACAAGACACTGGAGGACCATATCAGAATTGTAAACAAACTACTTAGTAGATGCTGCAATCAGAATGGATGGCAACTGTTAAGACACAACAATATTTCCAAGGATCACCTCAATGATGGTGGGCTGCATCTCAACGATCAAGAGGCCGTGGACAAGAAGGATGCTATGATTATTTACGGTGGAAATGAGATAGCCCGCTTGGAAAAGAGTTTACCTGATCCGGAGATGGGCGATGTGTATACAAAACTGCGTACGAAGTTAAACGACCATTTTACCCCGAAGAAGAATAAACATCATGCCCGTTATTTATTCTTGAAGATGAGGCCGCACGTGGGCGAAACTATAAGCGTGTATGCCGCGAGATTAAGAGAAAAGGCGAAAGAGTGCGAATTCGGAGATACATTTGATGAAAGAATCCTCGAACATATTATTCAGACCATTGATAACAAGAAATTAATCGAGAGGGCCATTAGCAAGACATGGGACCTCACAAGATTTCTTACTGAAGCAAGCCAAACCGAAGATATTGCGCGCCAAATACAAGATGTAATAACGGAGCAGGTCGACCATGCTGGTCGTGTGCAATCCGTACCGGCGAGAAGTGGATCTCAATATCAGATGAAACCGTGGAAATGTGGCTTTTGTGGATTGCTTGGTGCGCATGTGAAAGGAAAAGATTGCCCCGCATTTGGAAAGAAATGTAATAAATGTCACAAATGGAACCACTTCGCTGTTGTGTGTAAATCTCAGGGTAACAGATCTAGAAAACAGAAACCAGGCAAAGTCAAATTCAGAAGAAGAATAAAGAAGACAACAGAAGCGGGAGAATCAACAAGTTCCGATGATGAATTCTTCGGACAAGCAGCAGAGCACTTATCGCAAGCGAAAAAAGTTAAGCAGGTCGGAGGTGTGAGTACTACTAGCAGGTGTGTTAAAGTAAAGTTGAATGATGTGGATGTGCAGATGGAAGCGGATAGTGGTGCAGACGTTAATATAATGGATGAGCACCAATTTAAAGCATTGGTACATAGATCGAGTGTTAAACCAGTTCTTCGACCTAGCAACGTGAAATTATACATCCTGCAACACAAGCTTGATGTTAAGGGAGAATTCCGTGCAACAATACGCAATGACACTTGTGGTAGACTGGTGACATTTGTTGTGGTATTCGGGAGAATTAAATCACCTCCGCTTATTGGCAAGGAAACTTTATTAGGACTAGGGATGCTGAAGATCCAACCAAATGGTAGTCTCGCAGAACCAAATTCACTTGGGACATCCAGTGAGGGTTGTGTAGCTAATACTGTTAAGGACACTGGAATGCAGGAGATGGAAGACCTTGTTGCAAAGTACATAGTAGTGCAGTTAAAGCCCAAATTTGCAGAGGTACCACCCGAGAAACTGGAACCAAGTATGATCAGAGCTAGTGTTGATTTAAGAGTCCCAAACCACTACATTGAACGCAGTCGAATTGCACAAGCACCGGTATTCGAAGATTTTACTCACAAGTTCCATGACTGCTCCATCTGGACCAAATTAGACCTTCGCCAAGGTTACCACCAGTTAATGTTACATCCAGAATCAAGATCGGTCAGTACATTTTCTACTCCTTGGGGGAAAATCAGGCCTAAAAGATTGGTTTTTGGTGCAGAGGCTTCGCAAGACCTGTTTGATGACGCAATGTCACGGATCTTTGGGGATATTCCTCAGTGCATGAACCAGAGGGATGACATCCTGATTGGAGCACGCAATTGGAAGGAACACAATGAAACACTGGGTTCAGTATTCCAAAGAGCTGAAGATTACGGGATCACTTTTAACAAGCCCAAGTGCCATTTCGGTCAGACCCAGATTACATTTTATGGTTATCGATTTGACCAGGAATGTCTCAAGCCGACCCCAGAGAAGGTACAAGCTATTTACGAGTGTGAACCCCCCATGTCAAAGTATGAGGTGAGAAGTTTCCTTGGGATGGCCGGGTACCTGTCAAAATTCATACCCCGGTATGCGTCGCTTACGAAACCACTTAGGGACTTGATAAGAACTGAGACCAAATTTCAGTGGGGACCAACGGAACACAAGGCATTTAACGAAGTTAAGGGGGCTATTACAAGCAAGGACACAATTGCATTTTTCAACCCCAAACTGCCAATTATGGTACGTGTGGAAGCCAGTTATAATGAAGGATTATCAGCAGagcaatttGAAGGATTTGTACATCATCGAGTAACACCAAATCACCCTAGAGCAAATGGGCAGGTGGAGAGATTTATGCAGACCCTCAACAAAACAGAACAAATTGCCCACCTGCAAGGGAAATCAGGACCAGATAGAAACATGGCGATCCAGGATATGTTAATGGCTTACAGAGACACACCTCATCCTGCAACTGGCATTACACCTTATGAAGCTATGATGAACAGACCTGTCAAAACTAAGGTGGACTACACAATGCCACGGAAAGAGAGAAGCAGTAGAGATAAAATGGTGGATGAGAAGGACAGGCAGTATAAGGAGAAGATGACAGATGGTGGAAGCAGTAAAGAACACAATTTTGTGGTGGGAGACCATGTCCTGTTAAGACAAAGGAAGAGGAACAAATGGTCAACCCCATATGAGCCTGTATTCTACACGGTGATTAAAATTTGTGGATCTGCTATTACTGCTCGACGTATCACAGATGGCCGAGTGGTCCGGCGAAATGCTAATCAGTTCAAACTTGCAAACGTCCTTATGTACCAGGAGAATGTAGACGACAGCGGCCAGATTGAAGATTGGAGAGAGACACTTTTGATGGGTGTGGGTGACCTGAAAAATCAACCCAGTTATCACAAAGATGTTGAGCGGGAGAATCTACCAGAACCACCTGAACAAGAGACAACTGCAGAGCCAGTGCAAGAGAACCCCACCAAACAGAACGGTAATGGCAGCAGTCAACAGGAAGGAGGAACAACAGCAGCGAATTGTCAGGAAGTGGATATGCCAAGCCCAGCAGTCCAAGACACGTCTGTGCCATCCAGTAGTTCCACAAGACCTAGTAGACCGAAAAGAACGAGGCGACGACCTGCGTACCTGAATGTCTTTACTACGTGA

Transcript

amic_s0205.g9.t1

GATGTGGCTTTCCGTTGAAGTCCTGATATTTTTCTTCTCGAAGTTCGAGAGTCGCAAGTGGCGTGTCTCTGTGTGTGCTGTTTATACCTATGAAAATTAAATGGCTCTAAACTTAACTATCAACGATAAGAACCAACTGAAATGGTATGGCACTAAAGTTGAGCTGACTATATTTCTTACTGAGAGAATTCATCGCTCGACATGGGCCGCAGAGAACGTGAACTTTGACATAGCTTTCAATGGAACACTTGCTGTGTATAAACTTGAAGGCTTAACTCTGAACTTTTATGTGAGCACAAAAACGTTGCAAGTTCAAGGACGCTTGAAGGACAAATTTATTGAGGATATTAAAGACGGAATTACAGCAAGGGGGACTCAAGGACCAGCAGAAGAAGAGCACGTGCAAGTAGTGAACCAAGATGGCAGCCATCACCACCAAGGCGAAGCCGAAGTTGATGTAATAACTGTAGAATTGAGCAACAAAGAATTATCTTCGCCTGTCGATGGATCCGGGTCATCTCACTCCTCTTGTGCTTGCGAAGCGCCGCCGAGTCCAACTGATTTCATTTTGTTTTCGGAATTCTCAAAAGAAATCGAGAAAATTTGGTGTGAGGGAGATAAACAACCAGGGCAGTGGAGACTTCGTCGAGCATGCATCGAACAACCACCGGGAATCTCATTTTGTCGAGCAAGCCAGAAAAAGAAGAACCAAAGAAATGCACAAGTGAACAAAGGTACTATTTGTACTCGGCAAGCTTCACAACAATCTGTGCCAACCAAGAACTCTATCGAAGCTCTGGAGCAGAATGGCTTGCGTGAACCAACCAGCGTGGAATCAACAAGTACTAATACCACGGTAATCATTGGCGAATCGATGATAAAGCGCTTACAGTGTTGGAAAATTGCAAGGAAAGTCGGCCACAGGGTAGTTGTAAAGGAGTTTCCTGGAGCAACAACTTCTGACATGGAACACTATCTGAAAGCTGCTCTTGCTAAAGACCCGCAACAACTTATCCTTCATGTGGGAACGAATGATCTAAAGAGTAATTTAAGGCCAAATCCTGCTCAAATTGCTGATATCATTGTGGATTTGGCAAGAATGACTGGGAGTGAATCTCGAGCAGAAGTTATAATATCTAAAGCGATCACAAGATCAGACAAGACACTGGAGGACCATATCAGAATTGTAAACAAACTACTTAGTAGATGCTGCAATCAGAATGGATGGCAACTGTTAAGACACAACAATATTTCCAAGGATCACCTCAATGATGGTGGGCTGCATCTCAACGATCAAGAGGCCGTGGACAAGAAGGATGCTATGATTATTTACGGTGGAAATGAGATAGCCCGCTTGGAAAAGAGTTTACCTGATCCGGAGATGGGCGATGTGTATACAAAACTGCGTACGAAGTTAAACGACCATTTTACCCCGAAGAAGAATAAACATCATGCCCGTTATTTATTCTTGAAGATGAGGCCGCACGTGGGCGAAACTATAAGCGTGTATGCCGCGAGATTAAGAGAAAAGGCGAAAGAGTGCGAATTCGGAGATACATTTGATGAAAGAATCCTCGAACATATTATTCAGACCATTGATAACAAGAAATTAATCGAGAGGGCCATTAGCAAGACATGGGACCTCACAAGATTTCTTACTGAAGCAAGCCAAACCGAAGATATTGCGCGCCAAATACAAGATGTAATAACGGAGCAGGTCGACCATGCTGGTCGTGTGCAATCCGTACCGGCGAGAAGTGGATCTCAATATCAGATGAAACCGTGGAAATGTGGCTTTTGTGGATTGCTTGGTGCGCATGTGAAAGGAAAAGATTGCCCCGCATTTGGAAAGAAATGTAATAAATGTCACAAATGGAACCACTTCGCTGTTGTGTGTAAATCTCAGGGTAACAGATCTAGAAAACAGAAACCAGGCAAAGTCAAATTCAGAAGAAGAATAAAGAAGACAACAGAAGCGGGAGAATCAACAAGTTCCGATGATGAATTCTTCGGACAAGCAGCAGAGCACTTATCGCAAGCGAAAAAAGTTAAGCAGGTCGGAGGTGTGAGTACTACTAGCAGGTGTGTTAAAGTAAAGTTGAATGATGTGGATGTGCAGATGGAAGCGGATAGTGGTGCAGACGTTAATATAATGGATGAGCACCAATTTAAAGCATTGGTACATAGATCGAGTGTTAAACCAGTTCTTCGACCTAGCAACGTGAAATTATACATCCTGCAACACAAGCTTGATGTTAAGGGAGAATTCCGTGCAACAATACGCAATGACACTTGTGGTAGACTGGTGACATTTGTTGTGGTATTCGGGAGAATTAAATCACCTCCGCTTATTGGCAAGGAAACTTTATTAGGACTAGGGATGCTGAAGATCCAACCAAATGGTAGTCTCGCAGAACCAAATTCACTTGGGACATCCAGTGAGGGTTGTGTAGCTAATACTGTTAAGGACACTGGAATGCAGGAGATGGAAGACCTTGTTGCAAAGTACATAGTAGTGCAGTTAAAGCCCAAATTTGCAGAGGTACCACCCGAGAAACTGGAACCAAGTATGATCAGAGCTAGTGTTGATTTAAGAGTCCCAAACCACTACATTGAACGCAGTCGAATTGCACAAGCACCGGTATTCGAAGATTTTACTCACAAGTTCCATGACTGCTCCATCTGGACCAAATTAGACCTTCGCCAAGGTTACCACCAGTTAATGTTACATCCAGAATCAAGATCGGTCAGTACATTTTCTACTCCTTGGGGGAAAATCAGGCCTAAAAGATTGGTTTTTGGTGCAGAGGCTTCGCAAGACCTGTTTGATGACGCAATGTCACGGATCTTTGGGGATATTCCTCAGTGCATGAACCAGAGGGATGACATCCTGATTGGAGCACGCAATTGGAAGGAACACAATGAAACACTGGGTTCAGTATTCCAAAGAGCTGAAGATTACGGGATCACTTTTAACAAGCCCAAGTGCCATTTCGGTCAGACCCAGATTACATTTTATGGTTATCGATTTGACCAGGAATGTCTCAAGCCGACCCCAGAGAAGGTACAAGCTATTTACGAGTGTGAACCCCCCATGTCAAAGTATGAGGTGAGAAGTTTCCTTGGGATGGCCGGGTACCTGTCAAAATTCATACCCCGGTATGCGTCGCTTACGAAACCACTTAGGGACTTGATAAGAACTGAGACCAAATTTCAGTGGGGACCAACGGAACACAAGGCATTTAACGAAGTTAAGGGGGCTATTACAAGCAAGGACACAATTGCATTTTTCAACCCCAAACTGCCAATTATGGTACGTGTGGAAGCCAGTTATAATGAAGGATTATCAGCAGagcaatttGAAGGATTTGTACATCATCGAGTAACACCAAATCACCCTAGAGCAAATGGGCAGGTGGAGAGATTTATGCAGACCCTCAACAAAACAGAACAAATTGCCCACCTGCAAGGGAAATCAGGACCAGATAGAAACATGGCGATCCAGGATATGTTAATGGCTTACAGAGACACACCTCATCCTGCAACTGGCATTACACCTTATGAAGCTATGATGAACAGACCTGTCAAAACTAAGGTGGACTACACAATGCCACGGAAAGAGAGAAGCAGTAGAGATAAAATGGTGGATGAGAAGGACAGGCAGTATAAGGAGAAGATGACAGATGGTGGAAGCAGTAAAGAACACAATTTTGTGGTGGGAGACCATGTCCTGTTAAGACAAAGGAAGAGGAACAAATGGTCAACCCCATATGAGCCTGTATTCTACACGGTGATTAAAATTTGTGGATCTGCTATTACTGCTCGACGTATCACAGATGGCCGAGTGGTCCGGCGAAATGCTAATCAGTTCAAACTTGCAAACGTCCTTATGTACCAGGAGAATGTAGACGACAGCGGCCAGATTGAAGATTGGAGAGAGACACTTTTGATGGGTGTGGGTGACCTGAAAAATCAACCCAGTTATCACAAAGATGTTGAGCGGGAGAATCTACCAGAACCACCTGAACAAGAGACAACTGCAGAGCCAGTGCAAGAGAACCCCACCAAACAGAACGGTAATGGCAGCAGTCAACAGGAAGGAGGAACAACAGCAGCGAATTGTCAGGAAGTGGATATGCCAAGCCCAGCAGTCCAAGACACGTCTGTGCCATCCAGTAGTTCCACAAGACCTAGTAGACCGAAAAGAACGAGGCGACGACCTGCGTACCTGAATGTCTTTACTACGTGAATTACGAGAAGATATGCATAATACACGTACGGCATTATTGTATAGAATAGGAACTAAATCGAACCAAATTACCTAAGACTGATATTGATCACATTCAGTGTTGTGTACCCACGAAGTATAGTTTATTTAGTTCACAAAAAAAACAGTGTACTCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P05400	Enzymatic polyprotein OS=Carnation etched ring virus OX=10640 GN=ORF V PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000003 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13472 all species →	Lipase_GDSL_2	GDSL-like Lipase/Acylhydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR013830 all species →	Domain	SGNH hydrolase-type esterase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0205.g9.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.