Gene detail

Detailed information of amic_s0206.g2.t1 in Acropora microphthalma

Genomic Location: sc0000206_pilon:9276...32075
NR annotation: XP_015751963.1, PREDICTED: opioid-binding protein/cell adhesion molecule homolog [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0206.g2.t1

AGCATCGAGAGCCGGAGTCTATTTTGTTCCTGCGGTCGTGGATTTTGGTGGACAAAGATGTATTTAGCTTCATACTGTATACTGTTTGGAATCCTCGTATTTCCTCCTGAAATAGATGGTTCCAGTTTAACATGGCTTGAGCCAATGCCGTTTCAAGTGGTATCAAGTTCAAACCGAgtggagcaccaaaaccagacaaggctcattgaaggaaccattaatgcatcactgatctggcattttaaattatcatcggaactaacctttgtttcattgactttagcgttgaatggaggtgcaattgcatcagagactggggtattccaacagtttagagacaaatatgcagttgacttggttcagagctcagaaataattgttactttggttatctttgaagtaacagcagcgcatgatagaataatattttcttgtgaagtttttgcaagggaacaaagccagctaacatggaaaagtaatgttcaagtagatgtcgttgctcctccaagcaacatggtcacctcaagtaatcaagccataatagcacctgctgagttgagtttaaactgctcagctgatggaaaaccagagccaaacataacctggacaagagtctctgataacactgtagtgactatgccattaaacatcactgggagaaaggatggaggaaactacaaatgcactgctgataatggtgttggaaaaccttcgacgaaggaggtctttgttgatgttcagtctcctccaatggttacagttccttcagaagtctgtgttggccgtgaactgagtgtatttcttatctgtaaagtggaaggaaatcctccacctataatttcttggagtccatgtcctgaaaaaggtgtctgtgttggaagatacttgaatatttcaaaagtgcagactgcacgtgctaactacacctgtacagcaaccaatgatttgggagtagattcagaaaccacagttgtttTTATTGGAGGAAAAAATGTTAACTTGAGCCTGAGTGTAAGTGAAGAATGTGAGAACAAAGACTCTGTTTGGAAGATACTACAGGAAGAGCTTGTCAGAGTCTTTTCCAATACTCAAAGTTACTCTGGAGCAGATCAAATTGGTGTAAGCTGtgaaggcctgatctttgatgtgcgcttgaagttcagaactaaagttgcagaagatgatactatttccaaaattcgaaatgctattgtagatggaaagctgggaaaattaagtgtgaatgtatcacatatctttggaattccaccaccaacaactacagctgcaacaccaaccagcactactccaaaaccacatgACAACACTGGGCTTATCATTGGTGCCGTCTTGGGAAGTGTTGCCTTTGTAGCACTCATTGTTTTTATCATTTGGTGTGTGCGCAAGAAGAAATGCTGCAGTGAAACAAAGGAAGTCTCAGATAATACTGGTGCTGCTCAGGGAAGGAAAGGTAAAGATCAAAATGGTGGTGATGAAGCTGCATATGCAAGTACTTCAATGCTCCCTCATTCCAAGAGACCAGTGGAAAAAACCAATCAGGGCACAGTGCAGGCTTTGCCCATGTATGCACAGGTTGACAAAACTAAAAAGACGTCAAACAAAGGAGGGGCTGCCCAGGGACAACCTGGTGAGCTGAATTATGCACAGGTCGAGCACGTGACAAGTGGAAGAAGCTTGCCAAGGAAATCTTCCAGTGAACCCATTAAACCTTCCAACGAGGAAATCGTTTATGCTGATTTGGTGTAATTTGGCTGAAGTGGTGCTGTGGAAAAGCAGGGTGAATAGTTTGAGATTGCTTTTAAGGTTAAAAACCAAGTTTTTAGTTAATTATCGTAGGCTGTAAAACCCAATGCTTTGCGTATTCAATTAGTGGATAGAGCCATCCAGCAAAGGAATAGAGTGGTATTAAAACtatcagcaaggccacagttgttcaaaggagggataacactatccattggacaaatcgctttccactctatgactcagtaggttttggtacttatctaatagataatgatttacgttttgAatagcactttccatcggataaatcgctattcactggataacataagagaggttgtacttatctgcctgattgggattcaaacaccggttagaactttccaacttttgacagctATGAATATCGCTAATCTTTAAGTATGTCACATATCTTGCGTAATTAAGCTATATTATTACTAGTCTTGTCTTTTGCACAAAATTTTAGGCCCCTGTGTGTGGTATTTTAATCCCAAAATCAAAATTACTGCTTAATTTGCCCAGTACGTGCTCGCAAAGAAAGAAATCAATACAACTGGAGGGAAAACACATGCAGCAAATAGTAGCTGAAATTGTTCTTTGCATTGTTTTTGGCTCATTAACACCAAGGGTAACTTCAAAGGAGATTGCCAAAGAACTGGCTTTTGTTTTGTTTGATAACCATTAAGTGTTAGGTATAAAATACTGATTAAAAGTGCATTATACAGCTTGTATAATGCACTTCTTTTCTTTTAGTGGGTTATGCTTTTAAAGATGAAATTGAATAGGAAATTTGTGGAGAAAATTTCGTTTACGCAGTATAGCTTGAGTAGTTTTATCAGCTTTAATTCAAACCAAAATTTGTGCAAATATTCATGCTGTATGAACTCAAAAATGATCTGATCAGTCTGGAAGAAAGTTAAACGTGAAGACAAAAAAAAACTCGTCTGGAAGATTACATCAGACCTCGTCATAAAGGACGTTGCTGAACCCTCCAGGCCCCAAAAACGTCCAACATGCAATTTCTCCCTTCAACATTAATGCAGAATCATCCGAAAAGGTTACGAGAATTGAAAAAGGGGGCCTTGGTAATTTTTATTTTCCTTGCTACGTCTGTAAGAAAAGGTATGAAGATCACCCAGGAGAACATGTACATGGATATTGGAAGTTAAGCACTTGGGTTTCTTTCGGATCAATTAGCAAACAAATGTAACGGAACAGTTTGAAGTTAAATTGAAATGTACTCACTTTTATTCTTGCTTCGAACTTGTTGTTATTGTGAATTAATACGGTAGCTTTTATTTAAATAAGTCAACTAGACACTTCTTAACCTAGGGCAACGATAGGCCTTTCAGCTCGTTGATATCTAATTTGTGATTTGTATTAAGCAGAGTGACATTGAGTTCACCTCGTATAGTTCACCTCGTATATATGAGGGCGTCACCTCGTATATATGAGGGCGTCCAAGGGAAGCTAGTTAAAACTGCGTAGCAACCAATCCGCATTCtataggcgaatctttgctgacgtcattgtttacatttctgctcattagcatacgagttacctaatagaagcagtggccgaatatatgagctaaatgcaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q26474	Lachesin OS=Schistocerca americana OX=7009 GN=LAC PE=1 SV=1
Q24372	Lachesin OS=Drosophila melanogaster OX=7227 GN=Lac PE=1 SV=2
P11834	Opioid-binding protein/cell adhesion molecule OS=Bos taurus OX=9913 GN=OPCML PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000023 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051275 all species →	Family	Cellular adhesion and signaling domain-containing protein	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11640 all species →	NEPHRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0206.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.