Gene detail

Detailed information of amic_s0210.g5.t1 in Acropora microphthalma

Genomic Location: sc0000210_pilon:121766...138155
NR annotation: CAH3022818.1, unnamed protein product [Porites evermanni]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0210.g5.t1

ATGTTTGAAGCCAAGTGCAAGCTGTATACAAAAGAGATGAATCCTAAACCCACGCACAAATCTTCGATAGCAGCTGGAGATATGCTGAAGCTTCGTGGTTACTTTTCTGAAGGTCTTGACTCAAATAATTCTTGGGCAGATCCCGAGCGACTTCTACAGTTTGTGTGGTTTTCAGTTTGTTTTCATTTTGGTCGCCGCGGAAGAGAAGGATGGCGAGAGCTCTCTAAGCAATCATTCGGAATAAAAACAGACGACTCTGGAGCCCGATATGTGACAGAAATACAGACAGAACAAACAAAGAACTATCAAGGAGGGTCGAAGCAAAAGGATCAAGCTTATTCTGATACTTGGACTGGAAAAAGGTCAAAGAACACGTCCACAGCTTTCTGCGAAAGTTTTGGTAAACTTGGCTCCTTAAGATCTTTCTGCAGAAAAGGTACTCCAGTTGCTGCCCTCACTGGCACTGCTGATGAGAGGACAAGAAAAACTATCCAAGAAAGCCTCGCACTAAAGGTAAACCTGCTGACAGTGTATGTGAGCCCGAACCGGGAACATCTTAGATTTTCTGTTAAAAAGGTTAAAAAAGAGCAACAACTGGAAGAACTGCATTGGTTCATCGAACTAATAAAACAGCATGGTAAAGACACACCTAAAACTCTCATATTTTGCAACACTCTAAATGTAATTGCCCACGTTACCAATTACTTGTTAAGCAAGTTGGGCCCATGTGCATATGACCAACAAAATAAAGTACCGCAGAACTGCTTTCTTGGCGTTTATCATTCCAACTCCTGGGACAGAAACAAGGAAAGGATTTCAAATTCACTTAAAGCTAGGAATGGCAGCATTAAGAGAGTAGTTGTTGCAACAACAGCATTGCACATGGGAGTTAATTTCCCAGATATTTGTTACATCATTACTTGGGGAGTGGCAAGGTCTTTGTTAGATTTCCACCAAGAGGCAGGTCATGCTGGAAGAGACGGTGTTCAATCTCATGTTGTGGTTCTTTATCATGGTCATCAATCTGGACCTTGTCAAAAGGAGGTTAAACAGTTCTTAAAAACTAATGGATGCCTAAGTGTTGGAGCTTATCAGTCATTAGACAAGAATATAAAGTCACTTTCTCCTCTCCACAACTGTTGCTCATTCTGCGCTACTGTTTGCAAATGCAATGGACATTCATGTAATGCAGAGGCACTGCCTTTTGAGGAAGAAGCATCACTGCCTGAGGAGGCTGTCAGCAGAAGTACAAGAGAAGTAACTTCACGGGATCGTCGAGACCTGGACAGTGCTTTGAAACAAGTTGTTACAAGTATCGAGATGCAGGGATTGTCCACAGACAATACATCAAGTCATGGTTTCTCTGAACAACTGATAAGCGATGTGGTAAGCAAATCCTCTGACATTTTCACAATTGAGAATGTTCTTAGTAATTTCCCTGTATTTTCGGTTGGTGCTGCTTTGCATATTTTAGAAATCTTGCTGGAAATTTTTTTAGACACTCCTAACTTGGAAGAAATGCTTGCGCTTTTCAGTTTTTCTTTAGATTTTAGTCACCATACTTGGTTCAACCTGGAAGATCTTACATTTACTGACAGTGGGGATGAACTCTACCTTTCATGTGAAGAAACACCCCTACCTACCCCAACCATGCATCTGGAATTCTATCGTTTTCATCCCAAAGAATCACGACAAGTACACGTTTCCACCGTGCGGGCTAAGTTACGTCGACCTGACGAGGATTTACATCAACTGAGATGCGAAATCGCCCGCCTTGTCGAGCTGGCCTATCCCGACGACCCGCTCGTTATACTTGATCGTACTGCAAGAGATTTCTTCATTGGTGCCCTAACTCCCCTCGCATTACGAGAGAAGGTGCTGGATTTGGGCCCGAATACCCTGGATGAGGCACTGGTGGCTGCTCAGCGGTATGAATCGAATCAAAAAGTGTTAAGCAAAGGGAGTGCTCACGTACTTTCTTCAACGTCCGAAGAGATGGACGGGAATTCTACTTTACGTCAAAGGACTCCAGAACCCCCCGTATGGGCTCAGCAGCTCTTTCAACAACAGGCAGAAATTTTAGAGAAGCTGAAGAACATTCCCCAAGGAAGGCAAGGGAAACTAGAGACGGGCGGGGCGCAGCCAGAAGTGATCCTGCCCGATAAATCTAAAGGTGCATTTGTGCTGTGTCGTGTGAATGATGTCCTGTCTTATGCTTTACTGGACACTGGTGCAGAAGCAACAATTATCAGTGATGACATTTATCATCGTATTAACACTAATGCAAGTAAGCTTGAGCCCCCACGAAAGCCTGTTCTTGGGGCCAATAACTTGCCGCTTGATGTTTTTGGTGAAACAGAGTTGACCCTTGAGCTTGGTAGTATCACAGCGCAACATAAGGTGCTAGTATGTCGTGGGTTACCACAACAAGTGTTGATTGGCATAGATTTTCTCATGACTCACAAGTGTATTATTAACTTTGACAATAACACTGTATACAGTAAAGGAGATTCCAATAGCATGGTGTTTGGCCCCCTTGATAAAGTCTACAGGATCACCGTCGCTGAAACCGTAACATTATCACAAAATATGGTTGCTGATATACCTTGTGTGATTGAGGGGATGAGTGCTCACAAGAAATGTGTGGGTGTGGTTGAACCTGGAGGTAAATTCTCAGAAAGGTATTCTGTTGGAGCCTTGCGGACTGCAGTAACGGTAAAAGATGGGCGAAAACCAGTTCGTGTGTTTAATTGCCTGAACAAGCCTCTGAAAATTTATCGCTGCAGCAGTGTTGGAGACCTCCACCCACTAGTGGATAGAGGTGATCTGCCTGATAAAAATGCGAGTGAGGGTTACAAAGTTGTAAAGGGTGCTAAAGAACATGTCAAGGTAGAATTGGGGGCTAGGCAGGGTAGTGCAGTTTTTGTGGAAAACTCTGAAGCTGATACTGTTCCTTTCAAAGAAATGTTTCCCATAAGCAGTGATTCAGTTCCGGAAGAGGAAAAACGTAAGCGCTATGAGGTTCTATCCACCTATGCGTACTGCATTTCAAGGGGGCCATGGGATTTAGGCTCAGCAAAAGGTGTGAAACATATCATTGACACTGGATCAGCACAGCCAATACAGGTACCTCCTAGAAGAGTCCCTTTTCATAAAAGGCAGGAAATGCGCCGCCAAGTGGATGAAATGCTTGAAACACACATCATAGAGCCTTCCGAATCCCCGTGGTCCTCTCCTGTGGTTTTGGTTGCCAAGCCTGACGGCACTCAACGCTTCTGTGTGGACTATCGAGCTCTGAACAAGGTTGAACATTGCTCTGGACAATCGCATGGAAATGCAGATGGACTCTCGCGTTTGACATGGGAAAGTATCAATTCCGCTGAACAAGATGAGGATGCCATGTTGATCAACTCTATCAACATAGAGCTGCTGTCAAGGGAAAGTATAAAGGTAGCCCTGAAACAGGATCCTGTTCTGTCGCAGGTGGTGGATTGGCTTAAAACCGGCGTGAAACCTGCGAGATGTGATGTGGAAGGAGGTGGGCGCAAACTTCTGTCATACTGGTCACAGTGGGGGAGACTGCTACTAAGGGATGGCCTGGTATTGAGACGCTCGGAAAACGAAAAGACAGGCCAAGAGATCTACAAACAGATTTGTTTGCCAGAAAGCTTTGTGCCTCAAGTGTTGCATTTCCTTCATAATAGCCCTTCAGCCGGTCACATTGGTGTGTCAAAAACTTTGGAGAAGGTGCGAAAGAGATTTTATTGGCATGGCATGCGTGAGGATGTTGAAAATCACATCAGAAGGTGCAGTCCTTGTGATCAAGTTAATGACCCACGCAAGTTGCCTAGAGCACCTCTTATCAACATCAAGTCAGGTCACCCCTTGCAAAGAGTTGCTATAGACATTGTTGGACCTACGCCAAGGTCAAGCCTTGGTCACGAGTGGCTGCTGGTGGTCTCTGACCACTTCACTAAATTTGCGCAAGCTTTTCCAGTAAGGAACACATCAGCTGTAACACTTGCTAAGAAAGTGATGGACGAGTACATATGTCGATTTGGCTGTTTTGAGAGCCTACATTCTGACCAGGGAGCCAATGTTGATGGAGCTGTCTTCAAGGGACTGTGTGATTTAATTGATGCCGCAAAAACTCGAACGACTCCATATCATCCTCAAGTGGAGAGGCTAAACAAATCACTAGTGAAGATTTTGTGCAAATTGATTTCTGACCATCGCCGGGACTGGGCCGACTTAGTGCCAAAAGCGGTTCTTGCGTACAGTACCAGTGTGCACGAGTCAACTGGGTTTACCCCTTACCGTCTAATGTTTGGCCGCGAAGCTATTTTGCCTCTTGACGCAGTCCTGAAGCTTGAGACGTCACTGCCCCAGAGAGGGGTGCAGAGTTATCCTGATTATGTTGTTCAACAGAAGAAGCAACTGGAGGAAACAGACCACCTAGTGAGAGAGAACCTCAAGCAGGCGCAGAGAACTCAGAAAGCTTACTACGACACCAGGTGCCATGGTTAA

Transcript

amic_s0210.g5.t1

CCATCGACAGTTGACTTCAGCTCCGATAAGCAGGAGTATGAACATTATGCAAGACAGCGAGTTTCTTTCAGCGAACAAAATGTTTGAAGCCAAGTGCAAGCTGTATACAAAAGAGATGAATCCTAAACCCACGCACAAATCTTCGATAGCAGCTGGAGATATGCTGAAGCTTCGTGGTTACTTTTCTGAAGGTCTTGACTCAAATAATTCTTGGGCAGATCCCGAGCGACTTCTACAGTTTGTGTGGTTTTCAGTTTGTTTTCATTTTGGTCGCCGCGGAAGAGAAGGATGGCGAGAGCTCTCTAAGCAATCATTCGGAATAAAAACAGACGACTCTGGAGCCCGATATGTGACAGAAATACAGACAGAACAAACAAAGAACTATCAAGGAGGGTCGAAGCAAAAGGATCAAGCTTATTCTGATACTTGGACTGGAAAAAGGTCAAAGAACACGTCCACAGCTTTCTGCGAAAGTTTTGGTAAACTTGGCTCCTTAAGATCTTTCTGCAGAAAAGGTACTCCAGTTGCTGCCCTCACTGGCACTGCTGATGAGAGGACAAGAAAAACTATCCAAGAAAGCCTCGCACTAAAGGTAAACCTGCTGACAGTGTATGTGAGCCCGAACCGGGAACATCTTAGATTTTCTGTTAAAAAGGTTAAAAAAGAGCAACAACTGGAAGAACTGCATTGGTTCATCGAACTAATAAAACAGCATGGTAAAGACACACCTAAAACTCTCATATTTTGCAACACTCTAAATGTAATTGCCCACGTTACCAATTACTTGTTAAGCAAGTTGGGCCCATGTGCATATGACCAACAAAATAAAGTACCGCAGAACTGCTTTCTTGGCGTTTATCATTCCAACTCCTGGGACAGAAACAAGGAAAGGATTTCAAATTCACTTAAAGCTAGGAATGGCAGCATTAAGAGAGTAGTTGTTGCAACAACAGCATTGCACATGGGAGTTAATTTCCCAGATATTTGTTACATCATTACTTGGGGAGTGGCAAGGTCTTTGTTAGATTTCCACCAAGAGGCAGGTCATGCTGGAAGAGACGGTGTTCAATCTCATGTTGTGGTTCTTTATCATGGTCATCAATCTGGACCTTGTCAAAAGGAGGTTAAACAGTTCTTAAAAACTAATGGATGCCTAAGTGTTGGAGCTTATCAGTCATTAGACAAGAATATAAAGTCACTTTCTCCTCTCCACAACTGTTGCTCATTCTGCGCTACTGTTTGCAAATGCAATGGACATTCATGTAATGCAGAGGCACTGCCTTTTGAGGAAGAAGCATCACTGCCTGAGGAGGCTGTCAGCAGAAGTACAAGAGAAGTAACTTCACGGGATCGTCGAGACCTGGACAGTGCTTTGAAACAAGTTGTTACAAGTATCGAGATGCAGGGATTGTCCACAGACAATACATCAAGTCATGGTTTCTCTGAACAACTGATAAGCGATGTGGTAAGCAAATCCTCTGACATTTTCACAATTGAGAATGTTCTTAGTAATTTCCCTGTATTTTCGGTTGGTGCTGCTTTGCATATTTTAGAAATCTTGCTGGAAATTTTTTTAGACACTCCTAACTTGGAAGAAATGCTTGCGCTTTTCAGTTTTTCTTTAGATTTTAGTCACCATACTTGGTTCAACCTGGAAGATCTTACATTTACTGACAGTGGGGATGAACTCTACCTTTCATGTGAAGAAACACCCCTACCTACCCCAACCATGCATCTGGAATTCTATCGTTTTCATCCCAAAGAATCACGACAAGTACACGTTTCCACCGTGCGGGCTAAGTTACGTCGACCTGACGAGGATTTACATCAACTGAGATGCGAAATCGCCCGCCTTGTCGAGCTGGCCTATCCCGACGACCCGCTCGTTATACTTGATCGTACTGCAAGAGATTTCTTCATTGGTGCCCTAACTCCCCTCGCATTACGAGAGAAGGTGCTGGATTTGGGCCCGAATACCCTGGATGAGGCACTGGTGGCTGCTCAGCGGTATGAATCGAATCAAAAAGTGTTAAGCAAAGGGAGTGCTCACGTACTTTCTTCAACGTCCGAAGAGATGGACGGGAATTCTACTTTACGTCAAAGGACTCCAGAACCCCCCGTATGGGCTCAGCAGCTCTTTCAACAACAGGCAGAAATTTTAGAGAAGCTGAAGAACATTCCCCAAGGAAGGCAAGGGAAACTAGAGACGGGCGGGGCGCAGCCAGAAGTGATCCTGCCCGATAAATCTAAAGGTGCATTTGTGCTGTGTCGTGTGAATGATGTCCTGTCTTATGCTTTACTGGACACTGGTGCAGAAGCAACAATTATCAGTGATGACATTTATCATCGTATTAACACTAATGCAAGTAAGCTTGAGCCCCCACGAAAGCCTGTTCTTGGGGCCAATAACTTGCCGCTTGATGTTTTTGGTGAAACAGAGTTGACCCTTGAGCTTGGTAGTATCACAGCGCAACATAAGGTGCTAGTATGTCGTGGGTTACCACAACAAGTGTTGATTGGCATAGATTTTCTCATGACTCACAAGTGTATTATTAACTTTGACAATAACACTGTATACAGTAAAGGAGATTCCAATAGCATGGTGTTTGGCCCCCTTGATAAAGTCTACAGGATCACCGTCGCTGAAACCGTAACATTATCACAAAATATGGTTGCTGATATACCTTGTGTGATTGAGGGGATGAGTGCTCACAAGAAATGTGTGGGTGTGGTTGAACCTGGAGGTAAATTCTCAGAAAGGTATTCTGTTGGAGCCTTGCGGACTGCAGTAACGGTAAAAGATGGGCGAAAACCAGTTCGTGTGTTTAATTGCCTGAACAAGCCTCTGAAAATTTATCGCTGCAGCAGTGTTGGAGACCTCCACCCACTAGTGGATAGAGGTGATCTGCCTGATAAAAATGCGAGTGAGGGTTACAAAGTTGTAAAGGGTGCTAAAGAACATGTCAAGGTAGAATTGGGGGCTAGGCAGGGTAGTGCAGTTTTTGTGGAAAACTCTGAAGCTGATACTGTTCCTTTCAAAGAAATGTTTCCCATAAGCAGTGATTCAGTTCCGGAAGAGGAAAAACGTAAGCGCTATGAGGTTCTATCCACCTATGCGTACTGCATTTCAAGGGGGCCATGGGATTTAGGCTCAGCAAAAGGTGTGAAACATATCATTGACACTGGATCAGCACAGCCAATACAGGTACCTCCTAGAAGAGTCCCTTTTCATAAAAGGCAGGAAATGCGCCGCCAAGTGGATGAAATGCTTGAAACACACATCATAGAGCCTTCCGAATCCCCGTGGTCCTCTCCTGTGGTTTTGGTTGCCAAGCCTGACGGCACTCAACGCTTCTGTGTGGACTATCGAGCTCTGAACAAGGTTGAACATTGCTCTGGACAATCGCATGGAAATGCAGATGGACTCTCGCGTTTGACATGGGAAAGTATCAATTCCGCTGAACAAGATGAGGATGCCATGTTGATCAACTCTATCAACATAGAGCTGCTGTCAAGGGAAAGTATAAAGGTAGCCCTGAAACAGGATCCTGTTCTGTCGCAGGTGGTGGATTGGCTTAAAACCGGCGTGAAACCTGCGAGATGTGATGTGGAAGGAGGTGGGCGCAAACTTCTGTCATACTGGTCACAGTGGGGGAGACTGCTACTAAGGGATGGCCTGGTATTGAGACGCTCGGAAAACGAAAAGACAGGCCAAGAGATCTACAAACAGATTTGTTTGCCAGAAAGCTTTGTGCCTCAAGTGTTGCATTTCCTTCATAATAGCCCTTCAGCCGGTCACATTGGTGTGTCAAAAACTTTGGAGAAGGTGCGAAAGAGATTTTATTGGCATGGCATGCGTGAGGATGTTGAAAATCACATCAGAAGGTGCAGTCCTTGTGATCAAGTTAATGACCCACGCAAGTTGCCTAGAGCACCTCTTATCAACATCAAGTCAGGTCACCCCTTGCAAAGAGTTGCTATAGACATTGTTGGACCTACGCCAAGGTCAAGCCTTGGTCACGAGTGGCTGCTGGTGGTCTCTGACCACTTCACTAAATTTGCGCAAGCTTTTCCAGTAAGGAACACATCAGCTGTAACACTTGCTAAGAAAGTGATGGACGAGTACATATGTCGATTTGGCTGTTTTGAGAGCCTACATTCTGACCAGGGAGCCAATGTTGATGGAGCTGTCTTCAAGGGACTGTGTGATTTAATTGATGCCGCAAAAACTCGAACGACTCCATATCATCCTCAAGTGGAGAGGCTAAACAAATCACTAGTGAAGATTTTGTGCAAATTGATTTCTGACCATCGCCGGGACTGGGCCGACTTAGTGCCAAAAGCGGTTCTTGCGTACAGTACCAGTGTGCACGAGTCAACTGGGTTTACCCCTTACCGTCTAATGTTTGGCCGCGAAGCTATTTTGCCTCTTGACGCAGTCCTGAAGCTTGAGACGTCACTGCCCCAGAGAGGGGTGCAGAGTTATCCTGATTATGTTGTTCAACAGAAGAAGCAACTGGAGGAAACAGACCACCTAGTGAGAGAGAACCTCAAGCAGGCGCAGAGAACTCAGAAAGCTTACTACGACACCAGGTGCCATGGTTAACGGTTTCATGTAGGAGACCGAGTCTGGTATCGAAACCGAGCTAGGACAGGGAGGAAGAAATTCCTTAAGCCTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
Q9I920	RecQ-like DNA helicase BLM OS=Gallus gallus OX=9031 GN=BLM PE=1 SV=2
Q9DEY9	RecQ-like DNA helicase BLM OS=Xenopus laevis OX=8355 GN=blm PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000153 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13975 all species →	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0210.g5.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.