Gene detail

Detailed information of amic_s0214.g4.t1 in Acropora microphthalma

Genomic Location: sc0000214_pilon:49260...79865
NR annotation: XP_044170452.1, LOW QUALITY PROTEIN: uncharacterized protein LOC122947404 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0214.g4.t1

atgttaaagggttcatcctttccaggagggtgtgcaagtgcaagttttatttcaagcaggaagctaaaagtgactttgttaagttctgagtgggggtctacaaaaggaggcctgtccacaattaacagagagcttgctattcagttggcaaagaatgacaatgtggaagttagcatgtaccttcctctgtgcagtgagcaagatgaaagagcagcagctggattcagagtctgtcttcttaaagcaaagaagaagcctggatatgatccaattgactggttagcatcagttccaaaagatcatcatatggatgttgtgataggtcatggtatccgccttggtcgacaggttcaaacaataaaagaatttcgccctggctgcaagtggattcaagttgttcacacagaccctgaagaacttgccatgtttaaggactatgctgatcccactgtcaaaggtgcaaaaaagcaccaggctgaggttgaactctgcgaattggcagatcaaggtgtagctgttggacccaaattgactgaagcctttgcttgctatttgcgttcttgtggaaaggaccaagatgtcataaatctcaccccaggcatcttttcagagtttgctaatatcaatcaggctactgaagaaagagaaacatttcgtgtcttggtctttggccgtggtgatagtgaagattttctggtaaagggatatgacactgctgcacgtgcagttgctatgctgaaagacaaagaacgctctttcaaacttgtgtttgttggtgcaccagatagagaagaagataaagtgaaggaaagattccttgaagaaggcattttatcctgtcgactcattgtgcgcagtgcaaaggaaagagatcagcttgctaagcagttttatgaagctgaccttgttatgatgccctcaagaactgatggttttggtctggctgcacttgaagctttgtctgctggtcttcctgtgcttgtcagtcgtaattcaggtattggcaaggctttgaaacatgttccgcatggttcatactttgtggttaattcagaaaagccaaagagatgggcaaaagcagttaggaaaatttgcagaaaggaaagggaagtacggctgagggaggctagtttgcttcgtcaaagctatgcagagacataccaatgggaagggcaatgcagcatacttgtagagaagatgcttgaaatgatcaaagtttcatcagaaggacgatccttcgtgcaacagggaaggagacctttgcatctacatccgagttccacgccacccgtcatggaacaaagacatgatacagacatccgtagagtattcactcataactcagttgttgtgaagttgctgagagcagagtacaacagacgagctcaattaaggccacttttgtgggagagcacgatacaattaccgcttgaaaaggtctacacaagattgaaagttgtctcaagacggagaggaggtaatcaaggggaaaccgaacgctggagtgatgtaatctgggctgaggactcccggcgagacgcgacttcggcggaagcacgggctaatgaggcgaatccatgcgatgtctttgctatgttaaaggaaaataaggacgtcatgacaattgtagagggaaatccaggaattggtaaaacaactttctgtcttaaacttgccaatgactgggcaaatagcagctcttcagcaagtcttccagagttcgaactagttttgctgttaaaatgccgagatattgagggagacctaacggaagccatcgtggaacaactttttccaaaggatttgagcaaagatgccagggaagagctcttgcgtttcttggaggatattgaaaatcaagagagagttttaattattttggacggcctggacgagctggcagaaaaatcgaagcattacgtggatgatcttctccacagagaaagAGATGTGGGTCCCCGTTGTAAAGTGTGGACGGAGAAAGAAATGCTTGAAATGAGTGCCTGGGAATTTGCTGAGATTGAGTCACAGCTCTCCACTGCAGAACAGATAACATTCAAGTATGTGTGGGGGAGATATGATCTACTGATTCTTCCCCCGTCATTCCCTTATGGTGGAATGGAAAATCCATGTTTGACTTTTGTAACACCTACATTGCTGGTTGGAAAAGGGGTTGTCGCCCATGAGATTTCACACAGTTGGACTGGCAATCTTGTTACTAACCGAACTTGGGAACATTTTTGGTTAAATGAAGGATTCACTGTTTTTCTTGAGCGCAAAATTTTGGGACGGAGAAGAGGCGAAAAGATGGTAGATTTTTATTATATAGGTGGTTGGAAAACACTGAAAGATTCAGTCAAACAGTTTCCCGCTGACAGCCCGGCGACACAACTTGTGCAGGTCCTTAAAGAGACGGACCCTGATGACAGTTTCTCCAGTGTGCCCTATGAAAAAGGCTCCTGCTTTTTGTACTATTTGGAACAGATCCTTGGAGGACCAGAGGTGTTTGAACCATTTCTGAGATCATATTTGGAAACTTACCAGTATCAAACTGTGACGACATCGGAATGGAAATCTTATCTGGAAGGATATTTCCATGACAAGAGAGACATTCTGAGTCAAGTTGATTGGAATGCGTGGCTCAACAAGCCAGGGATGCCACCCGTGGATTTGATAAACTGGTATGACACAACTCTTACTGATCCTTGCTCTGCTCTTTGCGAGAGATGGCTACAGGCCAGTGTAGCAGAGCTTGAGACTTTTTCTTCAGATGACATTAAGGATTTTTCGCCGCCGCAAGTGGTTGAATTTCTAGCACAGCTTGTGGATAAGACCAGCGACAAGCCTCTACCTATTTCACATCTGCGAACAATGGACAAGGCTTATCGGCTAACGCCTTCAAAAAACTCCGAAATCAAATTCAGGTGGCTAAGACTATGCGTGCGGAGTGCTTATCGAGAACAATACTCAGAGACGGTAGACTTCATTACCATGCAAGGAAGAATGAAGTTTATTCGACCGCTATACAAGGAATTATATGGACGGAAAGAATCAAAGGATTTAGCTGTAAAAACATTTCAGGAACATCGCAAGTTCTACCACCCTATTGCAGAGAGCCTGATCGCTAAGGATTTGCATCTGGTTTGA

Transcript

amic_s0214.g4.t1

atctgcagtataagcattcagcagctccgtttgctgaatgttaaagggttcatcctttccaggagggtgtgcaagtgcaagttttatttcaagcaggaagctaaaagtgactttgttaagttctgagtgggggtctacaaaaggaggcctgtccacaattaacagagagcttgctattcagttggcaaagaatgacaatgtggaagttagcatgtaccttcctctgtgcagtgagcaagatgaaagagcagcagctggattcagagtctgtcttcttaaagcaaagaagaagcctggatatgatccaattgactggttagcatcagttccaaaagatcatcatatggatgttgtgataggtcatggtatccgccttggtcgacaggttcaaacaataaaagaatttcgccctggctgcaagtggattcaagttgttcacacagaccctgaagaacttgccatgtttaaggactatgctgatcccactgtcaaaggtgcaaaaaagcaccaggctgaggttgaactctgcgaattggcagatcaaggtgtagctgttggacccaaattgactgaagcctttgcttgctatttgcgttcttgtggaaaggaccaagatgtcataaatctcaccccaggcatcttttcagagtttgctaatatcaatcaggctactgaagaaagagaaacatttcgtgtcttggtctttggccgtggtgatagtgaagattttctggtaaagggatatgacactgctgcacgtgcagttgctatgctgaaagacaaagaacgctctttcaaacttgtgtttgttggtgcaccagatagagaagaagataaagtgaaggaaagattccttgaagaaggcattttatcctgtcgactcattgtgcgcagtgcaaaggaaagagatcagcttgctaagcagttttatgaagctgaccttgttatgatgccctcaagaactgatggttttggtctggctgcacttgaagctttgtctgctggtcttcctgtgcttgtcagtcgtaattcaggtattggcaaggctttgaaacatgttccgcatggttcatactttgtggttaattcagaaaagccaaagagatgggcaaaagcagttaggaaaatttgcagaaaggaaagggaagtacggctgagggaggctagtttgcttcgtcaaagctatgcagagacataccaatgggaagggcaatgcagcatacttgtagagaagatgcttgaaatgatcaaagtttcatcagaaggacgatccttcgtgcaacagggaaggagacctttgcatctacatccgagttccacgccacccgtcatggaacaaagacatgatacagacatccgtagagtattcactcataactcagttgttgtgaagttgctgagagcagagtacaacagacgagctcaattaaggccacttttgtgggagagcacgatacaattaccgcttgaaaaggtctacacaagattgaaagttgtctcaagacggagaggaggtaatcaaggggaaaccgaacgctggagtgatgtaatctgggctgaggactcccggcgagacgcgacttcggcggaagcacgggctaatgaggcgaatccatgcgatgtctttgctatgttaaaggaaaataaggacgtcatgacaattgtagagggaaatccaggaattggtaaaacaactttctgtcttaaacttgccaatgactgggcaaatagcagctcttcagcaagtcttccagagttcgaactagttttgctgttaaaatgccgagatattgagggagacctaacggaagccatcgtggaacaactttttccaaaggatttgagcaaagatgccagggaagagctcttgcgtttcttggaggatattgaaaatcaagagagagttttaattattttggacggcctggacgagctggcagaaaaatcgaagcattacgtggatgatcttctccacagagaaagAGATGTGGGTCCCCGTTGTAAAGTGTGGACGGAGAAAGAAATGCTTGAAATGAGTGCCTGGGAATTTGCTGAGATTGAGTCACAGCTCTCCACTGCAGAACAGATAACATTCAAGTATGTGTGGGGGAGATATGATCTACTGATTCTTCCCCCGTCATTCCCTTATGGTGGAATGGAAAATCCATGTTTGACTTTTGTAACACCTACATTGCTGGTTGGAAAAGGGGTTGTCGCCCATGAGATTTCACACAGTTGGACTGGCAATCTTGTTACTAACCGAACTTGGGAACATTTTTGGTTAAATGAAGGATTCACTGTTTTTCTTGAGCGCAAAATTTTGGGACGGAGAAGAGGCGAAAAGATGGTAGATTTTTATTATATAGGTGGTTGGAAAACACTGAAAGATTCAGTCAAACAGTTTCCCGCTGACAGCCCGGCGACACAACTTGTGCAGGTCCTTAAAGAGACGGACCCTGATGACAGTTTCTCCAGTGTGCCCTATGAAAAAGGCTCCTGCTTTTTGTACTATTTGGAACAGATCCTTGGAGGACCAGAGGTGTTTGAACCATTTCTGAGATCATATTTGGAAACTTACCAGTATCAAACTGTGACGACATCGGAATGGAAATCTTATCTGGAAGGATATTTCCATGACAAGAGAGACATTCTGAGTCAAGTTGATTGGAATGCGTGGCTCAACAAGCCAGGGATGCCACCCGTGGATTTGATAAACTGGTATGACACAACTCTTACTGATCCTTGCTCTGCTCTTTGCGAGAGATGGCTACAGGCCAGTGTAGCAGAGCTTGAGACTTTTTCTTCAGATGACATTAAGGATTTTTCGCCGCCGCAAGTGGTTGAATTTCTAGCACAGCTTGTGGATAAGACCAGCGACAAGCCTCTACCTATTTCACATCTGCGAACAATGGACAAGGCTTATCGGCTAACGCCTTCAAAAAACTCCGAAATCAAATTCAGGTGGCTAAGACTATGCGTGCGGAGTGCTTATCGAGAACAATACTCAGAGACGGTAGACTTCATTACCATGCAAGGAAGAATGAAGTTTATTCGACCGCTATACAAGGAATTATATGGACGGAAAGAATCAAAGGATTTAGCTGTAAAAACATTTCAGGAACATCGCAAGTTCTACCACCCTATTGCAGAGAGCCTGATCGCTAAGGATTTGCATCTGGTTTGAGAACGATCGCACTGGAAAACGGCCGGGCAGAAAGTAATCCTTTGTTGTTTTCCCCGGTTTTAGTTGTTTAGAGAATTCAGGAAAATTTGCGCTGAGTCTAAAACTCAAATCACAATAAGGATCGAAGAACGGAACCATGAATGATTTGGAAAGAATTAGTCATGTTCTGCATGATCTCTTCATAAAATAAAGTGAAAATAAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IP81	Leukotriene A-4 hydrolase OS=Xenopus laevis OX=8355 GN=lta4h.L PE=1 SV=1
P30349	Leukotriene A-4 hydrolase OS=Rattus norvegicus OX=10116 GN=Lta4h PE=1 SV=3
Q3SZH7	Leukotriene A-4 hydrolase OS=Bos taurus OX=9913 GN=LTA4H PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004565 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01433 all species →	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan
PF09127 all species →	Leuk-A4-hydro_C	Leukotriene A4 hydrolase, C-terminal	Repeat	Interproscan
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR014782 all species →	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan
IPR015211 all species →	Domain	Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal	Interproscan
IPR038502 all species →	Homologous_superfamily	Peptidase M1, LTA-4 hydrolase/aminopeptidase, C-terminal domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR034015 all species →	Family	Aminopeptidase, leukotriene A4 hydrolase-like	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027268 all species →	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45726 all species →	LEUKOTRIENE A-4 HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004177 all species →	Molecular Function	aminopeptidase activity	Interproscan
GO:0004301 all species →	Molecular Function	epoxide hydrolase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043171 all species →	Biological Process	peptide catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0214.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.