Gene detail

Detailed information of amic_s0215.g12.t1 in Acropora microphthalma

Genomic Location: sc0000215_pilon:93216...102514
NR annotation: XP_029189815.2, retina and anterior neural fold homeobox protein 2-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0215.g12.t1

TTCGAGTTCTTATTTTGGAAGTTTTACCAGGTCTTTTTGAGCATCGTATGTCTCCATGGATACATAGCGATTTGCCAACAATAGACTTGTAAGTTAGAGTGAATGATCATTAACTGTTGTTTAAGGCCGAAATGTTTCCTCAACTGTCTTATTTTAAGCGAAAAAAAATTGTTAATAGAATTATCGCCTCAAAACGGCCAATATTTGTCTGCCATCAAATTGACATCGCTCAGGGAAGCACTGCAGATTTTATTTAACCATTTCTAAACTAACTTAACCGGTGCGAAGTAAATGTTCTGTTTTTTTTTTTTCGTTCGGTAGGTAGGGATTAGTGGGAAAAATACCTCTAGTAGCAGAGTAGGGAAAGGAAATACTCCTCTCGCTTGTGTCGCCACATACCAAAATCGCAGCCAAACCAGATTTTGATGAAAGGTCTTTGGTTCAAAGACTAAGTTAATCTAATTAGATTTGAAATTTGCCTCTCTGCTATTCTTAGTCTCTTTTAACGAGCGACAGTTTGGAATTACACGGGATACGGTTTTGCTAATTAACTGGAGATGTTATCCGTTCAAGTTTAGTTGCCCATCGAAACCATTCACCTGTGACTCGTGTTGTGTTGAGAAAAGGCAACGGGATCGCAGATTCTTCTTTATTCTTTTCTTTTAATTTTCTCTCTAATCCTTACGCGTTTGTTTCTTAAATTTTGGTCTGCACTCTATACATCGAAAAGCAGGTATTGGAATTACCGCGATACGTTTACAAAGACGAAGGATTTTACAGAATAGAACGTCAATTTGTATGTGATCTATCTTTGCCTCGCCGTCTCGAAGTGATAGGTCGCTTTCTATCAGTGTGCCAGAAACGTTTGTCTGCAAATTCTATGAATACTACTGCTAGTTTCTGTCATTTCTTGTTATCGATTAGCAATACGTGAGCAGTAATATCTGGATAGATTCCTTGCACCTAAAACCGGTTGTCAAGGACAGTGTAGAAAAGGTTGACAAATTTTCCATTTCGTGTACGGCATGTCATTGTTTATTGCAAACAGCAATTATTTTTCTATAAAGTGTATCAATATTTTCTCAGGCTGTAGACACAAGCTGCTTTTAATGAAGCCCATCTATATGTTAACTTTGTCCCAAATGAATTAAAATTTTGAACTATTTATTTTTTAAACTCTAATGAACGCAAGAGACGAGGTAACAATTTGTTTGTATTTATAATAGTGTCTCAGGCCTGGCCAAATTCGCTTTGATAATTGAGCTCAACTTTCTTAAGCACGTCGTGTTAACTAAAAATAAAGCTAATTTTATTTCATTTTTCCGAAGTGTTGTTAAATAAAACATAAACTCATGCGACTGCTTTCTTTTCTTACTATAAGTAATTCCCTTTCATTGAACTTTTCCGAACTCGTGAAACCCGTACTTTTAACTTCAATTAGGCGAGTGGGGAAATTCGAGAAAGCAAATCATTTAAAACGTGGCTAGTTATTGGTGGACTTGCTCATTGCCTTGCAAATTATTTTTACAAAGCAATTGTTTTGAGGCAGTTTCTTTTACATTTGACACTAACATTGGTCAAGGACGGTATCTCAAGCGTGGATGAGTCGCTTTTAAATAATGTCTGTGAGCCTTAAACGCCTAGATAACGCTGCGGAGGAATTTTGCCACGGGAAAGTGGATGACTTGAACGAACAGAAAACGCAGACGGCCTCCGCGTTTACCGTTTTGGACGAAGATGACCCTTCTCCTAAAGAATACGGGAAGAGAAAACGAGGGCCCGATATCGGCAGCGGCTCAACGGAAGAGGCAAGTGGAACAAAACGACGCCACAGAACTACTTTCACTCAGATACAATTGGACACTTTGGAAGAAGCATTTATTCGCTCGCAGTATCCAGATGTATACACCAGGGAAGTTATTGCCAAGAAAATCCATTTGAGCGAGGCCCGTGTACAGGTATGGTTTCAAAATCGTCGTGCGAAATTTCGAAAGTATCAGCGACAGAAAGAGACTCTGCCGAGTTATCCCAGCTACCCAAGCTTTTTCTATCCACCCGAGGGACTGTATCCTTCGGGATCTCATTTTTACTTCCCAGTACCTCCTGTATCATGCCCAGTCAGTTCTTTACCAGGCTCCAAAAGCATTCTCGACAATCACCCTTCTTCGCACGTAGTCCCTTCGCCCTGCCGGTCTTGTCCGACCGGCAGTTTGTGCCACACCGCTGCTGGGCCTTTGTCGACTCATCATCCCTGGCGCCCAATTTTTGGTCCTTCGCCTTTGGAATCGAATAGGGCGATGATGGAGAAGGAAAGAAACGCGCCGAGTAGTCCGCAAAACGAATTGTCGAAAAAAAGTTTGGAGCAGCTGAGAATACGAGCTCAAATGTTTCAGAAGTATAGTCACTTCTTAAATTCGTCCTGTTTTTCGTAGATCGTGAATCTCCGATAGCCTGATTGGTCAAGGGACGTTAATCGCTTCCCACGTTGATCACGTGACAGTACTCACGATAGACCGAGTTGTCCCTAAATAAACCGTCTCGCACAAGGCTCCGAGGTTACTCGTGTCCTCCGAGTCGCGCGCGGTGCGTAAATTTTGCCCGTTCTCCTAGCTAGTGTACGCTGAAATTATAGTTTGCTTGCAATGTACTCTCAAGAGAGTGTTCTTTGAAATGCTTGAGTGTATTTGAAAGAGATGTAGCTTAGCCAAAACTTGCATTTCCCGAAAATTGGGAATGGCGTCTTCCTCTTTATATTTTCTTTTGGCTTAAATTATTAGTTTGATCTCCATTGCACACTGAAGTAATATTTATATTTAAATTTTGTCTGTTCTGTGTCtggtataccatgcgaaagggttgcgtagctattttatatcatgccatagaaaatgcagtatccagcaaggcCAGCACGAATTAATCAGTGCGTGACACTCGCAGACTTGAATGGTTTTGAAATGGCTTTCTAATGTCTACCCTCTTAAACCTTTCTCAAAATTTTTGTAACTATATTAATAAATGCATATAGTTCAAAACTCTTTTCATTTTCTTTTGagtttttgacctgaaaatttaagccgagtgaaaaatttggctctggcatggcttattaaaaggctcaaacaacagttggaagaaacttaacctacgatgggaaagttaggtgtgataccgttaaattgcactgatcgatcgatggaaaggttcggtagaatactgactaatattatacaacggctttcctgcattctgtttggatgtgttttctatggcatgtcataaaTATGTTCATTTCTATCTTTTATTTAGGTGGGGGCTCTTTTTTACGTCCTTTTTGTCTACGGCTCGTAGATTTAAATACCGGACAAATTGACTTTTTATCCCTCGCTCCCTGAAAATTGCTCAAGTAATTTGTTACTGTTCGGTACTAAATTTCGGACTTTATGGAATGGAACAAAACTTGTGGTTCCATATTTAGATAATTTAGATAGTGTATTATGAGGTGTAAACGGCAGTTTAGTATTAAAAAAAGTATATTGTACGATAAAGGTGCTTTTCTTTTAAGCAACAAATTGGTGCTAAAAATAACAAGTTGGCTGGACCTCTCAGGGTTATTCAGCCGGAGTGAGCCTGGGACACAGCCTTTGGATCAAGCATGCAGATAGCGCGATGCCCACTTTTTGCACGGTATGCAGGCTCGATAGTCAGAGCTTTTGCGAGGTTTTGTCCTCTTCCTGAATTCCAATATTGAGGCAAGTATAAACGCCAAAAACGATTCAAATTCTCTTTTTCTTCATTTCAAGTAGTAATCGTCTGCAGCTGGCACGCTGGGTTTACATTAATTTCTAACGATGCAAAGAAGCCAGAATAATACAGTGAAGCCTGGATTGCCTTTATTAACTCAATTCTACGAAACAACATCCACACAACCAGCTGTTTTCCACGATTTTTCCTCAAATAAGTTGACTCCATATTAAATTTACGGAGTAAGGAGAATAGCAATGTGACAGCAGGTCATGCGATATATTTGCGCGCAGATAGTAAAAGTTAAATTGCTTTTGCAATATACAGTAATTAGTAAAGAGGAATTGTCATAGTCAAAAAAGAAACTTTGTTTTTTACAATACAGGTGACAATCAATGTTAGCAAATGAATCTAGCAACAGCTGTCATGATTGAATTTGTGTTGACCTGTAATTCCTCGGATGCGAAAGAATCAGCCTGAATAAAAGTATAAACTTCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3LU38	Homeobox protein prophet of Pit-1 OS=Alouatta belzebul OX=30590 GN=PROP1 PE=3 SV=1
Q3LU39	Homeobox protein prophet of Pit-1 OS=Gorilla gorilla gorilla OX=9595 GN=PROP1 PE=3 SV=1
Q3LU40	Homeobox protein prophet of Pit-1 OS=Sapajus apella OX=9515 GN=PROP1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000383 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050649 all species →	Family	Paired Homeobox Transcription Factors	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329 all species →	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09334	ALX1, CART1; ALX homeobox protein 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.