Gene detail

Detailed information of amic_s0216.g13.t1 in Acropora microphthalma

Genomic Location: sc0000216_pilon:208926...223636
NR annotation: XP_029193755.2, protein AF-10-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0216.g13.t1

ATGGTAAAGGAGATGATTGGTGGTTGCTGTGTTTGTTCCGACGAAAGAGGATGGGACGAAAACCCATTGGTTTACTGTGATGGGCATGGGTGCAATGTTGCTGTGCATCAAGCTTGCTATGGGATCGTACAAGTTCCTAAAGGACCGTGGTTCTGTCGAAAATGTGAATCTCAGGAGAGAATCGCCCGAGTGAAGTGTGAACTATGCCCACATAAGGAAGGTGCCTTGAAAAGAACAGATACTGGAGGCTGGGCTCATGTTGTCTGTGCGTTGTACATTCCTGAAGTCCGGTTTGGTAATGTGACCACAATGGAGCCAATCATTTTGGCATCAGTGCCACATGACCGGTTCTGCAAAACCTGCTACATATGTGAGGAAAGAGGGAGGGAGAGCAAAACAGCTCATGGAGCTTGTATGAGCTGCAACAAGACAGGCTGTAGACATGCTTTTCATGTGACTTGTGCCCAAAGCTCTGGTCTGCTGTGCGAAGAAAATGATGGTCAGTCAGGGCCTACAGTGAAATATGTTGGTTACTGCCAGTTTCATTGGAATAGGAAGGCCAAAGGTGTTCTCTTTAACAGCAAACCATTTGAAAAATTGGACAAATCAATgaaaggagtagaaaaagagaaagacaaggaagtaaaggaaaaagagaaactagaaaaagataaagaaaagccaaaagccaagccggaaaaagaaaaagacaaaaagaTTCCCAAGCCAAGACTTTCCACTGGAGCTTCCTCTAGCTCCTCTGAGCAATCACCAAAGCCCGAAATCACTGCTCCAAACTTACAAAATCCTCCTTCCACACCAAAACAGAGAGGAAGAAAGCCATCTTCAGCGAAAACCCCGACAGAGATATTCGATTTCAAGGTAGTAACATCGGAGGCACAGAAAACAGCAAGTGTTGTCAATGACAGCCTGCGGCAATCTCCCTTACCTGGATTGGTTCCTCTCCCAGTGGCATCGGTACCAACCATCACCAGCAATTCCAGCATAGTGGCAAAGGAAACTTCGCCAGTGCCAACGCAGCCCACCGTCCTGAGCCCCGAAATGTTACCTATGTCTGTTTCCAGTCAGTTAAAAGCAATTCCGCAGCCCTCGACCAGTATTCTTGTCAGTGATGTCGCCAAAGACATGAACGTTGCGCCAGTTGCGGCAGTTGCGGCACCGACAAAAACCAGCACTTTCAAAGAAACGCCTAAGCAGCCAGCCGCTGCGGCGCCACCGAAGAAGCGCGCTGCACCCAAAAACAGCAACGAACCGAAGCGTAAAGTCGGCAGGCCACCACTGAAGTCCAAGCAGAGCCCTTCGGCAGCAAATCGCAAGAACAGCTCGCCGGCTTCAACCAGCAGTACGGTGACGTCGCCGTTGAACACGGCATTTCCATCGTCGTTCTCCCAAGATAGCCAAGGGCTACCATCACCGCCCTCGTATCTGTCCAATCAGAGTCCTCTGTTTGGTGCTAGCAGCAGTCAGGGAACTGGTGTACCGCAGAATGGTCCCCGCACACCCAGCCCCAATCCTTACATGATTCCGCAACCGAGGAGTAGAGGGCAGTTGGAGAATGGGCATGTGCTGAGACCCAACAACGTCAACCCAAGTCCATTGCAACTACCGACCAGCTTAGAGGAGCTATTAGAATATCAGTGGGAACAGGGAGCCCAGTTTTTAATGCAGCAGGCGTCACAGTACGATGTTGCCTCATTGATGAACAGCCTTCACCAGCTAAAAGCCGACAACGCTCGCCTCGAAGAGCGACTTGTTTCATTGACGACGCGGAAAAACCAGTTACTCCAAGTCAACGCCCGACTGGCCACGCCCATGTCGTGCACAAACACAAGCTCGACTGCGTCACCTAGCGCAACAAAGCAAACAACCCCGAACTCTGCAAGTACTGCAGCAGTTTCAACACAAGACACCTTGACGGCTGACACGAGAACTACCCCAAGCAGCGAGGGACCTCGAAGTGCCGTTAGCGCTTGCGCCAATGGGGCTGCAGTGTTAGGGGTCTGTCCCGGTGTCTTGGGGACAAAGGTGTCTTCAGTCACGGAGGGTAAAGCCCCGATGAGCGCCAATACCAAACAAGGATCTGTTATGGGAGATGAGAGAAAGACGGGAAACGGTACAGAAACGAAGGCTAACAAAACAAAGGATTCTTCAGCCAGACGCCTAGAGCCAAGTCTTTCCTCAACACAGAGTGTATCGTCAGCTTCGCCGAAGCAGACGCCGAAAGTAAGCAGCGTGCTTGTGCAGCCGCAGCATCCAGGGAAATTAGCGCTTCCACAACCCGCACTCGCCAATACACAAGACAAAGAAAAACAACATCAGAAGACGCCAACGCAAGTGAACGCGGTACAGCAGATTATCGTTCCAACTGCCGTGGCGGTGTCTAAAGCGACTCAGCCACGGTTTCAGACGCAGCAAAAAATTCTGCTCCCTCAACCTCCGTCCGTGAGTCAGACATTTTCAACCCAGCCGTTCTCGCAGGCTCAACCAACAGCAACTCAACAGCACGTTCTTTTTCAGCTCATAAAACAACAGGACGACCACCATCGACAAAACTCGGCCTTTGCACATGATAAACATCAGTTAGGGACTCAGCAAGTGCAGGCCTCCAAGCTGTTACCTGCCTCAGTCCCCGGTCAGCCATTCTCTGCCCATTCACTATCCCTCTCATACCCAGGATTTGTGACCGTCACTGATCCAATGGCAGCCAGGGTGGACATGCTGAAGACAACGCATTTGACGCCTCTTTCGATGGTCTCATTGGACACCAGCCAGAATGGACCAAAGGATCGTTCTCAGTTCTTCGACTTGGACAAGGGTGCGAATTCCGCGGACAAGACTTCAAGAAGTGGCTAG

Transcript

amic_s0216.g13.t1

GCATCGCGCGTCCATTTTAGTTTGAAAATCTGAGAGAACCGATGAAGTACATTTTCATTGCCCTTCCTTTGCCCGATTGCGCCCAAATCTGGATTGCATAAATCCTAAAAGGTGCTTCAGAGTAAATTGGCCTAAACTGGGTTGATAAATATGGTAAAGGAGATGATTGGTGGTTGCTGTGTTTGTTCCGACGAAAGAGGATGGGACGAAAACCCATTGGTTTACTGTGATGGGCATGGGTGCAATGTTGCTGTGCATCAAGCTTGCTATGGGATCGTACAAGTTCCTAAAGGACCGTGGTTCTGTCGAAAATGTGAATCTCAGGAGAGAATCGCCCGAGTGAAGTGTGAACTATGCCCACATAAGGAAGGTGCCTTGAAAAGAACAGATACTGGAGGCTGGGCTCATGTTGTCTGTGCGTTGTACATTCCTGAAGTCCGGTTTGGTAATGTGACCACAATGGAGCCAATCATTTTGGCATCAGTGCCACATGACCGGTTCTGCAAAACCTGCTACATATGTGAGGAAAGAGGGAGGGAGAGCAAAACAGCTCATGGAGCTTGTATGAGCTGCAACAAGACAGGCTGTAGACATGCTTTTCATGTGACTTGTGCCCAAAGCTCTGGTCTGCTGTGCGAAGAAAATGATGGTCAGTCAGGGCCTACAGTGAAATATGTTGGTTACTGCCAGTTTCATTGGAATAGGAAGGCCAAAGGTGTTCTCTTTAACAGCAAACCATTTGAAAAATTGGACAAATCAATgaaaggagtagaaaaagagaaagacaaggaagtaaaggaaaaagagaaactagaaaaagataaagaaaagccaaaagccaagccggaaaaagaaaaagacaaaaagaTTCCCAAGCCAAGACTTTCCACTGGAGCTTCCTCTAGCTCCTCTGAGCAATCACCAAAGCCCGAAATCACTGCTCCAAACTTACAAAATCCTCCTTCCACACCAAAACAGAGAGGAAGAAAGCCATCTTCAGCGAAAACCCCGACAGAGATATTCGATTTCAAGGTAGTAACATCGGAGGCACAGAAAACAGCAAGTGTTGTCAATGACAGCCTGCGGCAATCTCCCTTACCTGGATTGGTTCCTCTCCCAGTGGCATCGGTACCAACCATCACCAGCAATTCCAGCATAGTGGCAAAGGAAACTTCGCCAGTGCCAACGCAGCCCACCGTCCTGAGCCCCGAAATGTTACCTATGTCTGTTTCCAGTCAGTTAAAAGCAATTCCGCAGCCCTCGACCAGTATTCTTGTCAGTGATGTCGCCAAAGACATGAACGTTGCGCCAGTTGCGGCAGTTGCGGCACCGACAAAAACCAGCACTTTCAAAGAAACGCCTAAGCAGCCAGCCGCTGCGGCGCCACCGAAGAAGCGCGCTGCACCCAAAAACAGCAACGAACCGAAGCGTAAAGTCGGCAGGCCACCACTGAAGTCCAAGCAGAGCCCTTCGGCAGCAAATCGCAAGAACAGCTCGCCGGCTTCAACCAGCAGTACGGTGACGTCGCCGTTGAACACGGCATTTCCATCGTCGTTCTCCCAAGATAGCCAAGGGCTACCATCACCGCCCTCGTATCTGTCCAATCAGAGTCCTCTGTTTGGTGCTAGCAGCAGTCAGGGAACTGGTGTACCGCAGAATGGTCCCCGCACACCCAGCCCCAATCCTTACATGATTCCGCAACCGAGGAGTAGAGGGCAGTTGGAGAATGGGCATGTGCTGAGACCCAACAACGTCAACCCAAGTCCATTGCAACTACCGACCAGCTTAGAGGAGCTATTAGAATATCAGTGGGAACAGGGAGCCCAGTTTTTAATGCAGCAGGCGTCACAGTACGATGTTGCCTCATTGATGAACAGCCTTCACCAGCTAAAAGCCGACAACGCTCGCCTCGAAGAGCGACTTGTTTCATTGACGACGCGGAAAAACCAGTTACTCCAAGTCAACGCCCGACTGGCCACGCCCATGTCGTGCACAAACACAAGCTCGACTGCGTCACCTAGCGCAACAAAGCAAACAACCCCGAACTCTGCAAGTACTGCAGCAGTTTCAACACAAGACACCTTGACGGCTGACACGAGAACTACCCCAAGCAGCGAGGGACCTCGAAGTGCCGTTAGCGCTTGCGCCAATGGGGCTGCAGTGTTAGGGGTCTGTCCCGGTGTCTTGGGGACAAAGGTGTCTTCAGTCACGGAGGGTAAAGCCCCGATGAGCGCCAATACCAAACAAGGATCTGTTATGGGAGATGAGAGAAAGACGGGAAACGGTACAGAAACGAAGGCTAACAAAACAAAGGATTCTTCAGCCAGACGCCTAGAGCCAAGTCTTTCCTCAACACAGAGTGTATCGTCAGCTTCGCCGAAGCAGACGCCGAAAGTAAGCAGCGTGCTTGTGCAGCCGCAGCATCCAGGGAAATTAGCGCTTCCACAACCCGCACTCGCCAATACACAAGACAAAGAAAAACAACATCAGAAGACGCCAACGCAAGTGAACGCGGTACAGCAGATTATCGTTCCAACTGCCGTGGCGGTGTCTAAAGCGACTCAGCCACGGTTTCAGACGCAGCAAAAAATTCTGCTCCCTCAACCTCCGTCCGTGAGTCAGACATTTTCAACCCAGCCGTTCTCGCAGGCTCAACCAACAGCAACTCAACAGCACGTTCTTTTTCAGCTCATAAAACAACAGGACGACCACCATCGACAAAACTCGGCCTTTGCACATGATAAACATCAGTTAGGGACTCAGCAAGTGCAGGCCTCCAAGCTGTTACCTGCCTCAGTCCCCGGTCAGCCATTCTCTGCCCATTCACTATCCCTCTCATACCCAGGATTTGTGACCGTCACTGATCCAATGGCAGCCAGGGTGGACATGCTGAAGACAACGCATTTGACGCCTCTTTCGATGGTCTCATTGGACACCAGCCAGAATGGACCAAAGGATCGTTCTCAGTTCTTCGACTTGGACAAGGGTGCGAATTCCGCGGACAAGACTTCAAGAAGTGGCTAGTTGTAGTATCAGCTCCACCTTTCCATCAACTCTGTCCGTCATAACTCGAACCTCGAAAACAAAGCAGTGAATATCTTGAAGTCTAATCTACAAACATCAAGAACGACGGAGCCATGATCCAACTCAATTGAACGCTGTATCTCGAGACAAGATTAAACTCGACTTTTTGGGTCAAAAAAAAAAAAGGAAAAAAAAAGGACGCAATATTTTACTTTGTATATATTTTGCCCTACGTGAACGGTTATTTCATGTGCGAAGAAACTCTTTCGTCGTCAAGAAACTAATGGAGAAGAAAGGACATCATATCTCGGAAGTGCCAGATTGAAAGAGTATATTATGACCATAGATCATCGCTGGTTCCGATAACTTGCTCGATGGACGTTTTGCAAAGCTCATGCTGAACTACTGAATACGAGAGATTTTATGTCGCATTTTCCTGTGTTCCAGGGATGCAATGAATTTTAACTTCAAGCCCCTCTTTTTTTTTTTGTTAAACGTCGTGGATGCGCAAATTTTACGAATTTAACACATTTTTTTTTATGTTTACTTGAGCTGGGAGTTGTGCTTAGGGAAGACCTATtagagcagttttcaaatgactgtcgaaagtaattacgtgattgtgattgctacgcttagtgattggcttaaaagactcgcgccagtttttcaaccaatgagaagcaaaaccaaaatcaatcgcacctatgtacgcgtgatttttcccgcgcttcgagcgagttacaggtaactgctaagaattgtggttggttcatcgcgctgcctgctcctgttgtgattggtcggagtaattgctttggttttggtttttcgacagtcatttgaaaaccgctctaTATGAAGACaataggccatttccgaattccccccagtctctatgccaaagtgaatataagtgggaagtctttgctttggatgttagttttcattcctattggaattacaactaattaccatgacaaaaattttgactcgctttgaaagggagattgacggaaactcggaagtggcctatCGCGTGACATTAAAGTTTTGAAGTCTTGGCGCTTATTTAAGTTACCTTGCATCTTGTCGTTCTTTTACTGGAGATGTACTTGTGTCAAACGACAGAGATCGATCGGTGTCAAACATCACCAAACACTTGCTTTTTCCTTGGCGTGTTACCTATTCTATCAAACAAATACCAAATGAAAGTTAAAAGAAAAAATACTGAGGTTAAATAAAGGACTTTTGTTCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O54826	Protein AF-10 OS=Mus musculus OX=10090 GN=Mllt10 PE=1 SV=2
P55197	Protein AF-10 OS=Homo sapiens OX=9606 GN=MLLT10 PE=1 SV=2
P55198	Protein AF-17 OS=Homo sapiens OX=9606 GN=MLLT6 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005132 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13832 all species →	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan
PF13831 all species →	PHD_2	PHD-finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR050701 all species →	Family	Histone Modification Regulator	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR049773 all species →	Domain	AF10-like, coiled-coil domain	Interproscan
IPR049781 all species →	Domain	AF-10/AF-17, PHD finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR034732 all species →	Domain	Extended PHD (ePHD) domain	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13793 all species →	PHD FINGER PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23588	MLLT6_10, AF17_10; protein AF-17/10	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.