Gene detail

Detailed information of amic_s0217.g16.t1 in Acropora microphthalma

Genomic Location: sc0000217_pilon:170116...175125
NR annotation: XP_029196424.2, DEP domain-containing protein 1A-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0217.g16.t1

ATATATCTTTTCAGCGATCTGCAGATGACAGATCTTTCTTAAACACGACATTTGAACAGTATGGATGAGTGTAAGAAACCGAACACCGAATTGGAAAGTGATAATATGGCCCACGAGCCTTTCAAAGCGACAAAAATATGGAACGACCTCGTCGAGCATTTGCGAACGAATGTTGAGCATCGTCGAAGACGCTGGAAATTTCAATACTACGAGAATTGTTTTCGAGGCGGCGACGTCATTGAAGTGCTTCATTCTTATATTCAGAGCAATCCTCATTTGTCAAATGACGCCACTCGAGATCAAGTCAGATGTTTTTGTCAGATTCTCTTGGAGAAACGAATCATCGAATGTGTAACGACCGAAAATAGCAAGACGAAGAGCTATTGTTTCGAAGGTGGAAACAAGTTATATAGATTTTCATCTCACAATGACTCGTTCGATCACAACAGCATTTCATCACCCTCTCAAGATGCGAAGAAACTTGGTCGCAGAAGAAGTGTTCTTGGCCAGTGGGACCATAAAGCAATTAGAAGACGATCTTTGGGTTCAACACCCAAAGCACAGAAGAGATTTGCTGATCTTCTTTTGCCCGAGACCGTTCCCTCGCCTGCTATCAGCGATCCAAGCGTTACAAGGACGCGAGAAATACCAAGCAAGCGAAGACGACTAAGTTTGGATGCTGGTGCCATCTTGAGGAAGAACAAGACTGCCATGTTGTCCTACTCAGCTAATTCTAAAGATTTCATCAGTGAAATATGGTTTGAAATAGCCCTTTCTCAAATCCTTCAACTTACAGAGGTTCCTTTCTTGGAGGAGATACTGGCTGCTCAGACAACAGACCATGGCATGGGAGAAGTGGTCTTATCAAATAACATGCTGGAACATGGGAATGAGAGTTCTTACAACAAAGGAAGAAATGTTGCAGAGCCATCAAGCAGTGCTTGCTTCCAGGCAGGAATAGAGTGCATGAAGCTACAAAATGACTTTCCTTTGCCACAGCTACATGTCGATCACTTGTCAAGCTATGTAAATTTGACAAATGCAAAGGAAGCTGGAATCCAACAGCTTCTGTTAGAGTATTATGGGTCACTTCTGGATTCACTTATTCCCTCAAACCTTACAGACTTAGTCAATGCTGTTATTTCCACCCTAGTTGATGACTGGTCAAAAATTAACTCATTTCTGCCTCTACTGGCATTGATGCTTTCAACAAACCAAAAAAAACACTTGAAAAACTTGTTGAACTTTATTGGGAGATCTACAGAATCAAATGGTGGAAGGTATATAATCAAGAGGTTTACCAGTGCTATCTTGCCCAAGGATATAAGAGACAAGAATTCTGGTCAGCATGTACTTTCTTTGATGGTAAGACATCACCAGTTAATGTTTGCCACTCCCACATCTGTGAAAGAGCTTTTCCAAAGAAATGTGTACTACATGAAACAAGGGTTGTGTCCTCCATTTTTGTCCAAAGTTTCCAGACAGCTGTCTCTCGAGGAATATCAGCAACAAAAACTCCAAACAACAAATGAGTCCCTCAGTGATATGATGACTTTTATCATGGACAACCTGCATATGTCTTTGAAGGAAAAGGAAGAAAGACTAAAAGTCTTTCAGAAACACCACACTGCTGTGTTCCTGCGACATTTTCCAGATGGGGAGATGTAAATTAATCTTAGATTTTAAAAACAAGACCACTCTTCATAGACAAAAAGCAAACAACAGCCACATTGTTTTAAGGACGTCAGTGTTGTGTAAACCTACTGATAAACCATTGTGCAGTTGTCTACTTATTTGCAAGGCCTTTTAACTGAACTCAGGCTGCCAGTTTTACAAACCCATTTGTCTTCCCTGAAGTAAATTATTATTCATTCAAATAATCTTCTGGTCTTCGTCACCTTGGCCTCACTCTTATTCATAGGCTTGGCAACTAAAAGCAACTGCAAAAAAGGTCTATCTGTTTGGCCAAAGTAAGATTAGAAACCTCATACTTTAGTGCCTAGAGTGGGCCTTCTTAGGTACTGTAATTGCTATTACCTAATAAGTTTTTAAGATAAACCTTCTTAACTTGTCAAATTGAATGTGAATTTAACTCACATTATCATTGGTTCAACTTCATTTTTAATAAGAAGTTAACATTACTGAAAGCATTACAGACTTCTTTGTAATATACAGAAGCAGCCAATTCTAAGAAATTTCATGTCTTCTGTTTTCTGAGGAAATGGCTGTTGTTATTGTTGTTTTTTTAGAATCCTGACCTTCTAATAATTATTACAGATTTTAATAATCATTATTAAGATTAATCAAATCTAATGTACAGCATGAGTGTCTCAAATATTTATTAGTTTAGTGGCTAGCAGTATTATTAAGTTTAATTTATAATGTGAAAACTAGGTTAATATATCCTAATGTCACCTTAACTAGTTAGCTAATTCAGAGAAAGATTAACTAAATGCACCAGGGTATATTAAAGAGGAAATTTGGAGATTGTACATTAGTGAGTAGAGGTGAAAGTTTAGTCGCAAAACTAAAAAAAAAGTTATTCACTTTTGCACTGTATCAGTCATAATTTCTATCCCTGTACAGTAATAAACATAATTATTGTAAACAACACTCTTTTTTGGCAATTTGGTTCAAAATTGGTCAATATTTTGGACTTTCGTGTATTCTCAAATATGAATCACAAATCATGTTGCTCCCCACATTATCAATGTCTGCATCTGTCAGAAAACCAAAATCTATCTACACACAATGTCATGTAAAGTTTTATTTAATTGGGAAGCAAAATGGAGAAGGATTCCATGGACAGTTGAATTATTGTGTGGAAGTAGTTGAATCCAGTTACCATTCACATGATGTATATTTACTTGGTTAAACCAGTAATTGTAATTATTATTATTAGCTGTTATTCCAGTGCAAATGCTTACACTGTATCTCTTCAAATTAGCAGAGCGATGTTCAGTAAAACACCTCCCTTCCTAATTTGAAAAATGCAATGCAAAATCTCTGGCATTAGTTCCTTTATTGACATCCCTTATCATCATCTCACCACTTCTTGAGACATGAGCCAAaattaataaatcaaattaatgaatcagttcttaattaatcataaaaacaatattattgttattagaattaattattattaatCGATTCCCACACATCTTTTCATGAGCCCATAGGTTTGGAACAAAAGCATGAGTGGTATTAATGATCTGCACATTTTTAGAACTGTCAGAGAAATTTGACAAACCGCTAAGCCCATTCCAAATTTCTCAAGTAGTAGACTAAAAATACACAATGTCACTAACATATCTAGCTACATAACATGCCATTTTACCACTAAATCCTTGAGGTCTGTATGTGAATTACACTGACTAAGTAACTTTCCCATAaatacAGCTAAATGTCTCATACACTGCACCTACAGTACTTATCATTATATATTACTCGATTTGGGGAATTATCATACAACTGCTTAAGTTTACAATCAAAGTACAGACAGACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZLD2	DEP domain-containing protein 1B OS=Gallus gallus OX=9031 GN=DEPDC1B PE=2 SV=1
Q803Q4	DEP domain-containing protein 1A OS=Danio rerio OX=7955 GN=depdc1a PE=2 SV=1
Q5TB30	DEP domain-containing protein 1A OS=Homo sapiens OX=9606 GN=DEPDC1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009830 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16206 all species →	DEP DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0217.g16.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.