Detailed information of amic_s0219.g35.t1 in Acropora microphthalma

Genomic Location: sc0000219_pilon:703073...720750
NR annotation: XP_029179281.2, AT-rich interactive domain-containing protein 4A-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P29374AT-rich interactive domain-containing protein 4A OS=Homo sapiens OX=9606 GN=ARID4A PE=1 SV=3
F8VPQ2AT-rich interactive domain-containing protein 4A OS=Mus musculus OX=10090 GN=Arid4a PE=1 SV=1
Q4LE39AT-rich interactive domain-containing protein 4B OS=Homo sapiens OX=9606 GN=ARID4B PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006047 (this species only)
Transcription factor familyARID · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08169
all species →		RBB1NTRBB1NT (NUC162) domainDomainInterproscan
PF01388
all species →		ARIDARID/BRIGHT DNA binding domainDomainInterproscan
PF11717
all species →		Tudor-knotRNA binding activity-knot of a chromodomain FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051232
all species →		FamilyAT-rich Interactive Domain/SWI1 Chromatin RemodelingInterproscan
IPR001606
all species →		DomainARID DNA-binding domainInterproscan
IPR016197
all species →		Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR036431
all species →		Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR012603
all species →		DomainARID4A/B, PWWP domainInterproscan
IPR000953
all species →		DomainChromo/chromo shadow domainInterproscan
IPR025995
all species →		DomainRNA binding activity-knot of a chromodomainInterproscan
IPR002999
all species →		DomainTudor domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13964
all species →		RBP-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000976
all species →		Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0219.g35.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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