Gene detail

Detailed information of amic_s0219.g9.t1 in Acropora microphthalma

Genomic Location: sc0000219_pilon:135345...141765
NR annotation: XP_029197704.2, LOW QUALITY PROTEIN: delta(8)-fatty-acid desaturase 2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0219.g9.t1

CCGTATTTCAGTTTTCTGCCGTCAATCTGGAAGAAACACGGGGAGCGCCCAGCCTTGCTTCGTCATGATGAAGCAAACCAAATACTATAGCTTCGAAGAGGTGAAACAACACAACACTAAAGGAGATTACTGGGTAGTTATCGACGACAGTGTTTACGATGTAAGCAAATGGGCTCCGCATCATCCTGGCGGAGAACTCCCAATTCGCTATATGGCCGGCCGCGAGTGCTCCGATGTCTTCAAAGCATTTCATAACTCGTCAATCAGAGAAACAAAGCTGCCCTTGTTCAAAATTGGCGAGATCAGAGATGATTGCAAAACGTCTATCAAGGAGTCTTCGCTGGAGCAAGACTACCGCAAATTGAGGGAAGAAGTCGAGGGCTGCCTTCAGACGGACTATTGGTTCTATGTCAGACAAGCAATCAACCTTGGCCTTATTTTTGCAGCATTGGTTTATGGTGTGATATTTAGCGATAATGTTTACATCCAAGTAGCGTCCTCTTTTACGATGGCGGCCTTTTGGCAGCAAATGGCTTTTGTTGGGCACGATGGTGGCCACATGGCTATCACACATGATTTCAAGACAGACTGGAAGATTGGCATATTCGTAGGGAACATGACTACAGGGGTCAGCATCGGATGGTGGAAAAAGAGCCACAACGCGCATCACATTGTGACAAATTCAGTGGAATTTGATCCTGATATTCAGCACCTTCCTGTCTTTGCTGTCACTGAGAAATTTTTCAAGTCTGTGAAGTCCATGTACCATGAAAGAATCCTTTACTTTGACCAAGTTGCAAGGTTCTTTGTGTCCAACCAACACTGGTTGTATTACATAGTCATGGGTCTTGCTCGCTTTAACCTGTATGTGCAGAGTTTCCTGTTGGTATTTTCGTTGCCTAGTGGCCGAAACAAATATTTTGAACTCTTTGGTTTGATTTTCTTCTGGACATGGTACATTTACTTGTGTTCATTTTTGCCCACTTGGACATCACTGTTCATCTTTGTCTTTGTGGCCCACTTTCTTGCTGGAATTCTTCATGTTCAGATAACCCTCAGCCACTTCTCTATGGACACCTACCATGGTCACCCAAATGAGGTGTTCAAGGGAAGCGGCTATGCTCTCCTTCAATTGCAAACAACGATGGACATCGAATGTAATCCTTGGTTAGATTTCTTCCACGGAGGATTGCAGTTCCAAATTGAGCATCACCTGTTTCCGAGGCTGCCGCGTCACAGGCTGCGTGAAACGAAATCCAAAGTGCAAGAGCTTTGCAGGAAGCACAACGTGCCATACAGGTCAAAGACATTCTACGAGGCAAATTTAGAAGTGATCCAGAGACTCAAAGAAACAGCTACAAAGGCAAAGTGTCTTTCTCCGATCATCTGGGAGGGTGTCAATGCAATTGGGTAAAGAAAAAATTTGGTAATGTACAGTAGCCTTTCTCTTTTGATAGTTACAGGTGAGAATCCATTCAAAGTCATCTCCTTTAGTTACACCAGGAAAATGTAATGACTTATGTGTCATAAACTGGTTTCATCTTTCAGTCTCCAAAGTTTGACGTTTTTTTATTTGTGTCAAATTGTCATTACCAGACCATTAAAGTGAAACACATTCATCACTTAATTCTTGTTGTGCATTCAGCCTTCAGCACTTTTCTCAATGATATACAAAGATAATGAAAGGGTTCCAGTTGGGCTGGATTTCAGTTGCAAAAACAAAAACAATTTTTCTCAGTATATGTTGTTGTTAATGGAATACTTATTATAACAAGTAATTTGAAGGGATTCTTTCAAGATAATGATGAACTTAACCAGTTTGGAGAAATCCTTGATCCTTTTTTCTTCTTTTTTTTTATGTTTTCTGAAAACCCGGTTGTTACAGAATCTCCATGAATAGCATAGCATAGGTTTGTCTATAGCTCAAATCCATTAATGACAGAATTCATTTGGAGTGACAAACAGTCAAGATATATAATACGTGGTGGGATTGATGCACATTGAATTCTATTAGATATCACTCTTGCTGACTTGTCTTTAATGAGGGTTTTCAAAGATAGTAAAACTGTTCCCAACAACATCCTTGTTTTCAACTTCTAGCTCTCTTTCTGACAACCCTGTTCAGTAGACGTTGTTTCAAAGGTGAAGTAAAACAAACTTTTTTACTGATTGTCTCCAAACTCCTTCTTAAACAGCATATTAAAAAGGCTGCAGAGGTATCTTTAAATAATATTGCCTTTTTAGGTGGCATGTATTAGGGTGTTAATAATAGTTATTCTCCCTGAAAAATATTATTAATTGGCTTATTATGTGAAGGACCTTGCGTAAAAAATTTTTTCATCAAAGTTAGGGACTTAAATTTACAGTGTACCGGTACTTGAATTTAACTTTTCAATGCAAATTACATTTTGGCTGTTGTTATTTGTTGGCAACTCTTATTGTTATTTTGTCAATAATTATTAAATTAGGTTTTGGGGTATTCATGTATTTGAACATTGAATATTTGTGTTTCAACTTTCCATTAGTTATCCaatagtccatttcacagtcgtgtgttcagatgcctggccttggaatgagactgaggttgatgttgaccttgttttgaaagaaaccttcctgcttttgttatgatcaagatgttgatattatgctaatcaggaggaatttacgtaagaaaagtagtgaggtttcaatcaaaacaagaacaacaccagcctcgctttcattcagaggccaggcaactaagcacacaactgcaaaatgTAAAATGGTCCATTCGTGCCCACTTCATAGAATGATATATTTGGAGGTGgcattcaattggatgcatgtggaccttaataagtggcacaaagtgttccctcatcttctactattttcaccatcaataattctggcaagaaatttggacagtaatggtcctccttattttacttctcaaagaagctaaagcagttaaaccccaaaacccaacaccacgctaaccctagtgtttgaaaacgtggtacacgtttagacttaacagatactcacaatcatcaatggccaacatgcatccaattaagtgcctttcttaacatacgtgaaAAATGGACAGAATGAAGATTATGATATTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3EBF7	Delta(8)-fatty-acid desaturase 2 OS=Arabidopsis thaliana OX=3702 GN=SLD2 PE=1 SV=1
Q43469	Delta(8)-fatty-acid desaturase OS=Helianthus annuus OX=4232 GN=sld1 PE=1 SV=1
Q9ZRP7	Delta(8)-fatty-acid desaturase 1 OS=Arabidopsis thaliana OX=3702 GN=SLD1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004190 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00487 all species →	FA_desaturase	Fatty acid desaturase	Domain	Interproscan
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005804 all species →	Domain	Fatty acid desaturase domain	Interproscan
IPR012171 all species →	Family	Fatty acid desaturase	Interproscan
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19353 all species →	FATTY ACID DESATURASE 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016717 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0219.g9.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.