Detailed information of amic_s0223.g20.t1 in Acropora microphthalma

Genomic Location: sc0000223_pilon:293397...344325
NR annotation: XP_044184838.1, fibrocystin-L-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q86WI1Fibrocystin-L OS=Homo sapiens OX=9606 GN=PKHD1L1 PE=1 SV=2
Q80ZA4Fibrocystin-L OS=Mus musculus OX=10090 GN=Pkhd1l1 PE=1 SV=1
P08F94Fibrocystin OS=Homo sapiens OX=9606 GN=PKHD1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001248 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01833
all species →		TIGIPT/TIG domainDomainInterproscan
PF07691
all species →		PA14PA14 domainDomainInterproscan
PF00028
all species →		CadherinCadherin domainDomainInterproscan
PF10162
all species →		G8G8 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019316
all species →		DomainG8 domainInterproscan
IPR037524
all species →		DomainPA14/GLEYA domainInterproscan
IPR002126
all species →		DomainCadherin-likeInterproscan
IPR015919
all species →		Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR036439
all species →		Homologous_superfamilyDockerin domain superfamilyInterproscan
IPR014756
all species →		Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR002909
all species →		DomainIPT domainInterproscan
IPR020894
all species →		Conserved_siteCadherin conserved siteInterproscan
IPR011050
all species →		Homologous_superfamilyPectin lyase fold/virulence factorInterproscan
IPR008972
all species →		Homologous_superfamilyCupredoxinInterproscan
IPR052387
all species →		FamilyFibrocystin-related proteinInterproscan
IPR011658
all species →		DomainPA14 domainInterproscan
IPR006626
all species →		RepeatParallel beta-helix repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46769
all species →		POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0007156
all species →		Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0000272
all species →		Biological Processpolysaccharide catabolic processInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007155
all species →		Biological Processcell adhesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0223.g20.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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