Gene detail

Detailed information of amic_s0224.g11.t1 in Acropora microphthalma

Genomic Location: sc0000224_pilon:114308...116365
NR annotation: XP_044174864.1, LOW QUALITY PROTEIN: endophilin-A2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0224.g11.t1

TCTCATTTGCAAAGCCTATGGTGAAAATTTTGGTCGCTCTCTCGATAAAGCCAGATCAAAAGGTCGTGTGTTCACTTAAGTTCGACACGATTTTATTTGTATCAAGTACATCGAAGAAAAGAAATACTAATTCAAGATGTCGCTGGCAGGATTCAAAAAGCAGATCAACAAAGCGAATCAGTTTGTGAGCGAAAAGATGGGATCGGCTGAGGGAACCAAGATGGAGGACGAGTTTGTCGACTTGGAACGAAAGACGGACGTGATGACAAACCTTGTCACCCAGTTGTTGAGCAAAACCAAGGAATATCTTCAACCAAATCCTACCGTACGTGCCAAGATATACATGCACATGGCTTCTCAAGGAAGCAAATACCCTCAAACAGAAGGAGCACTTGGTGATGTCATGCTGAAAGCGGGGCACGATCTTGATCCACAACTCTCTGACTACGCGTCTGCTCTCCTTGATGTCGGCAGCGCGCTTATCGAAGTCGCCGAAGCGAAAGATGTCATGGACCAGCAGGTTCATGAGAGCTTTCTAATGCCCCTACATGAACTGGACGAGAAACAACTAAAGGAGATTGCAGGGCATCGGAAAAAACTTCAAGGAAGAAGACTCGACTATGACTGTAAGAAACGCAAGGGAAATAAAATCTCGGTGGAGGAAGTGAAAATGGCCCAGTATAAATTTGAAGAGTCCAAGGATATTTGCCAAGAGGAAATGGCAAAGCTGATGGGCAATGAAGTTGAGCGAATTCACCAGCTCAGTCAGCTTGTGTGTGGTATGTTGGAGCACCATAAGAAATCAGCAGACACCCTCGAGCGACTACTGTTGTTGTTGAACAGGAGGGTCCACGAAGCTTCAAAACGAAGCGGGAACGCTGAAAAAACCGAGAGGCCGGCGACCACCGAGAGCACCCAGAGCAAGTCGGAAGTTTCCGCCAAAGGCACGAATTCTTTGGCAAACGACTCGGAATCCAGCCAGAATCAGAAAAACGAAGCGACTGGGAATAAACCGAGTTGTCGGGCAAGATGTGAGTACAAGGCACAAAAAGATGAAGAGATTTCGTTCTCTGAAGGCCAGGTGATAATGTTGTCAGGAAAGATTGATAACGAATGGTTCGAAGGAACCTTGGACGGCAAATTTGGCAAATTTCCCGCTAAACACGTAGAAATTTTGGTCGATATTCCATGAGCAAATTTCTTCTAAGCAAGACACCAATCCCACATTGGATCATCTCCCAAGAAATTAATGACTTTCAGTTATACTTAACGAAATAAAATCTGATTTTTGGTTTTTAAGAAAAATCATATTCAGATAAAAGATTTATTTTTAGTTCACCAGAACTATCTCAAAAAGTGTAATTCATTTCGAGAAAATGTAAAATGTGATCAATACTACGTTTAAAGTTATTTTTTATTTCAGGCATTTCTGAAAAGAAGTCCTCTACAGGAGATAATCGAAAACTTTGATGTCATTATTTCTCCTTTTGCTAATACTCTCGTATTTCCGCTCCCAAATTAAGACCTTAGTAAGCTTTCGCTGTTAATAAGTGAGAGACAGCAAATCAAATTTAAATGTGTTCTTTGAAGAATAGTGAAGAATAATGTGAAGCTACAGAAACAATGGAATAAAAACAATCGATGTTTTTTCACGGTCAAATTTTTTGCGCCGAAAATAAACAATTGTGAAGAATTCCTGGGGGCGAAAAATATTCGTCCACATCATTAAATAGAAACATCGTTAACAAAGTAATCTTGGATAAAACAAAGTATTCAAATAGCGAGATCTTTGACAGGATTGTCTGATTAAAAGCTTGTTAAGTTAACCTCTTATCTTATCCACCATTTTGAGAAAACGTAACAACAAGGTAAACTCACGTCGGCCATGATAGTATTTTTTACACCTAAAGTCTCGAACGTCGCTTGAATTGTGAGCAAATCTTTGGTTTCTTTCTACGGTTTCGGCGGAAGCTCCGGTTCAACGCCAGTCGAGAAAGTCGTCCTGTCCTGGGAACAAGGTTAAGCATTCACGCATAATGATAAAATTGCAATTTTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99961	Endophilin-A2 OS=Homo sapiens OX=9606 GN=SH3GL1 PE=1 SV=1
Q99963	Endophilin-A3 OS=Homo sapiens OX=9606 GN=SH3GL3 PE=1 SV=1
Q2KJA1	Endophilin-A2 OS=Bos taurus OX=9913 GN=SH3GL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003027 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03114 all species →	BAR	BAR domain	Domain	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004148 all species →	Domain	BAR domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR050384 all species →	Family	Endophilin/SH3RF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14167 all species →	SH3 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11247	SH3GL; endophilin-A	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.