Gene detail

Detailed information of amic_s0224.g9.t2 in Acropora microphthalma

Genomic Location: sc0000224_pilon:89706...106695
NR annotation: XP_015765965.1, PREDICTED: probable Xaa-Pro aminopeptidase 3 isoform X1 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0224.g9.t2

GGTGAAAATCAAAATGGCAGCCGAGTTGAGGGGAACGCTCTCTGTGATATCAAAACATTATCATTTTAGCAAAGTAGTTTCTTTAGCCTGTGTTTGCAAAAGGGACAAGAACACGTTGGCAAACGGGGCATGGACGACCTCGAGTCGGAGAAAAGCTCAGTCAACTTTCGATTGCAAGAATCAGCGTGCTGGAACTTTTTGCACCTTTGGAAGGCTTGCAGGAAAAGTCTCTGATTCCAATGAAGAAAGGTTGAAGTGCCTCAGAAAGAGGGGACTTAGATTTACTGGAGATAAGACCAAGACAATTGGACAAGCAACTCCTGAATCTCATCCTCACTTGCTAAAGATAGATGAACACTTGAATCCCACTCCAAGGAGATCAAGGAGAGGAACTCCTGATAACACTTTTGTTACACCTGGAATCACCAAGAAGGAGTACAGAGACAGAAGACACAAGTTACTGAGTTTGCTTGCAAAGACACATTTTGGGGAAACTCACGACAAGCACTTGGTGATCATTCCGAGCAATCCCGTGACCTACATGACAACAGATGTACCGTACCCTTTCCGACAAAACACAGATTTCCTCTATTTAACAGGATATCAAGGGTCAGATGCAGTTTTGGTTTTACAATCATTGGAAGGACTTCCCTTTCCTGCTCACAAGAGTACCTTGTTTATTCAACCTCATGACCCTAAAAGGGAACTGTGGGATGGCAAAAGGCCAACTACTAAAGATGCAATTCTTTTCTTTGGATTTGATGAGTCATATTCAATTAAAAATCTTGCCACTGTCCTTACTGACAGATTTGCAGGCAAAGACTACTGTGTGTGGTACGATCACCTACGTCCAACAAATCTATTGATTCATGATGAGATTTCCAAGGTTCTTTTTCACACTGAGAAGTTTACGTATAAAAATTTATTGATTTTGGGTCACAACACTCAAATGCTGCGACTGATGAAATCAGAGGCCGAAGTGAAGCTCCTGAGAGAGTCAGCTTCTTTGACGGCTAGAGCTTTTGTGAAGATAGATTTACTTCCCAGGAATTTAACAGAGAGTGAACTGAAAAAGAGAGCCGCTGAATTCTGCCCTCATCATTTGGGTCATTATCTCGGTATGGACACTCATGACACACATATGGTCAGCAGAGGCCTGGGCCTACATCCGGGCATGGTGATCACAGTCGAACCTGGTATCTACATATCTGAACAAAACGACAAAGTTCCCGAAAGGTATCGAGGAATAGGCATAAGAATTGAAGACGATGTATTAATAACGGAGAATGGAGCCGAAATTTTAACCGCTGAATGTCCGAAGGAGGTGGAAGAGATTGAAAGACTAATGAGTCTAACAAGAGAGACTTGATCCTGTTGCATAAATCATCAGCTAGCGCACTTTGAATTGACCGTCAGTGTGCTGTAGATACAGCGAACGCATTGACGAACTAACCGAATGCGTTAACGAAACGTCTGTGGGCAATTGCGAAATGACTTGTGTTCAAATGAGCTCTTACACCTAAAGGGGTTGCAATTGTTTTAAAATACAACTCaacgactggaacaaaacttaaggccctggagcctgtttctggaaagtcccgaaacttttcgggcgcattttggttcacataattctctttgtatctccaaaacgatggcgtctcgaggcacgaaactttgcagttatttttatttttattccctttacagcatacgaaaagaccagctttacacaataagccggtcgaagttttactaatggcctttcgagtccgaaaagttttcgggacttcgagaaacaggcccctgaaccgaatttctcgaagcatagttagtgctaaccggcgttaattaccatataaacttataggttttgatgcttcttatccagtggttatccttacccatgcttcgagcaaccggcccctgttcgAAATGACCGAAACTAGTTCAAGACTTGAACATGACTTTCTCATACAATTGACCTCGAAAATTTTCTCCTCACCTTTGTAGTGATCACGAGACTCGTTATTGCTGGTTCTTCACTTCTTCGTGTTCGCCCACAAACGTGTTTAAAACGGAGCTCTTAGTCTAAAATCAGGAACTAAAAACCGTTGTACATCTTTAACTAGATCATGAGCAATTTGGTAATAAATACTATTTTGAGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5DEQ3	Xaa-Pro aminopeptidase 3 OS=Rattus norvegicus OX=10116 GN=Xpnpep3 PE=1 SV=1
F4HZG9	Intermediate cleaving peptidase 55, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ICP55 PE=1 SV=1
Q54T46	Xaa-Pro aminopeptidase 3 OS=Dictyostelium discoideum OX=44689 GN=xpnpep3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002909 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF05195 all species →	AMP_N	Aminopeptidase P, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029149 all species →	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR000994 all species →	Domain	Peptidase M24	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR007865 all species →	Domain	Aminopeptidase P, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43226 all species →	XAA-PRO AMINOPEPTIDASE 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004177 all species →	Molecular Function	aminopeptidase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0224.g9.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.