Detailed information of amic_s0225.g11.t1 in Acropora microphthalma

Genomic Location: sc0000225_pilon:185479...186735
NR annotation: XP_029203736.2, E3 ubiquitin-protein ligase TRIM56-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9BRZ2E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens OX=9606 GN=TRIM56 PE=1 SV=3
Q80VI1E3 ubiquitin-protein ligase TRIM56 OS=Mus musculus OX=10090 GN=Trim56 PE=1 SV=1
E1BD59E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus OX=9913 GN=TRIM56 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000293 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13445
all species →		zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF00643
all species →		zf-B_boxB-box zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR027370
all species →		DomainZinc finger, RING-type, eukaryoticInterproscan
IPR000315
all species →		DomainB-box-type zinc fingerInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR047153
all species →		FamilyTRIM45/56/19Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR25462
all species →		BONUS, ISOFORM C-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0006513
all species →		Biological Processprotein monoubiquitinationInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0225.g11.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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