Gene detail

Detailed information of amic_s0226.g5.t2 in Acropora microphthalma

Genomic Location: sc0000226_pilon:87898...97605
NR annotation: XP_015770321.1, PREDICTED: von Willebrand factor A domain-containing protein 5A-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0226.g5.t2

ATGTCTGAATCACACCCCGCAGTTGCAACAGTAATGTCTCTTCTTGTCATTGCGAGCATCGTGGGAAACATCCTCGTTTGCGCTGTGATAAAGAAGAACCGGGACATGAGGACTCCAATAAACTATTTACTGGTTAATTTGGCCGTGGCGGACATCCTATTTGCCATATTTTACATACCAAAGATCATCTTAGGCCAGACCTTCATCGAGCAACCTGAGGGAGTGGCTGGAGGGCTTTTGTGCACACTGTTGACAAATGGAACCCTGGCCTGGGTTGGTGCGTCTTCTACTGTCCTGACCCTTGTAGCCATAGCTACCGAACGCTATTATGTGATTGTTTATCCTTACAGGAACACAGGAAAAATAACTATGTGCAAATTGAGGTTTGTTTTACCTGGTATTTGGATTCTTTCGGTGATTCTTCAAATCAGAGAGTTTGGAAAAGAAGTTGACAACAACACATGCATTTACCTGTGGTCAGATGAGTTTGTCAAAGGTGTGAGTGTCGTCTTGCATACCATCGTGTTCCTTTCCTCCGTGCCTATGATCTTTTTATACACCAGAGTGGTTTACACTTTGTGGTTCAAACGTAATGATGATAACAAGCTCACGTATCATCAGCAGGGTGTGTTGAAGATGCGGAAGAGAGTCACCTTGATGGTAATCACCATCAGCGTTATTTTTGCTGTTTCCTGGAGTACCCACTCAATTCTTCACATCTTAGACGACGTCAGTGCCTACGCCCTCAATCCTTTTGCAATTCCCATTTCTCATGTAACGCTTATGTTTAATTCCGCTGTCAATCCGTTTGCATACGCTCTAATAAACCAACGATTCAAGGAGAAGATCAAGCAAATGATATCCTGCAAACAATCGAGGGTTCACGTCGTAAAGAAATCCCAGGATATTAAAATGGGTAACAAAACAACTCTACCAACACTTGATCCTTGCTCCGGACAGTGTGGAAAGGCAACAAATGAAGACGCTGCAGTGTGTGGATTTCAAGCGATCATCGACGGTCGAACCATTGTGGCCGAGGTACAAGACGAGGAAGAAGCTCTAGGTACCTACGAAGATGCTCTTAGTAGCGGACAGAGTGCGTTTCTGCTCGAAGAAAGCGACGAAAGCTCGGATACTTTTCAGATAAGTGTTGGGAATTTACCACCGAAGAAGGAAGCTCTTGTAGAGCTCCGTTTTCTTACAGAGCTGTCAGTAGAAAGTGAAGGCCGAGTGGTGTTTGTGCTTCCAACAGTCCTGAATCCCAGATATTCCCCAGCGCACACCGCACCAAGTCTCAGCTCTCAAATTCCTAGAGTTTCCACCGTCGATTCACCTTACTCCTTTACGTTTCAGATGAAAGTGAAAGCTATTTCCGCTATCACTGAAATCTCTTCCACATCCAACACGTTGAAAGTTGAAGTCGACGAAATCAACAAGGCGCAGGCAACAGTTTCTCTAGCAGAACCACACAACTTAACACAAGATATCGTGGTTCACATTTTGGCACAGGAGCCCTTCAAACCACAAGCAATCGTTGAAAATGGTATCAAAATAGAGGGTAGAGAAGATAAACAAGGTTTCATGGCAAATCCAGTCGTTATGCTAAATTTCTTTCCTGAATTCAAAAATCCCGAATCGTCTGAAGTGGGCGAATTTGTGTTTGTGATTGATCGCAGTAGTAGTATGGGCGGACACAGGATGGACGGCGCTAAAACCACCCTGTTGTTGTTTCTCAAGAGCTTACCTGACGGCTGTTTTTTTAATGTGGTGGGGTTTGGAAGCAGTTTTAAAATTCTTTTTGCAAAGAGCCAGCCATACAATGATGAAAACTTGAAGAAAGCGACTGATTTGGCCCAGAAAATGACGGCTAACCTCGGTGGCACAGAAATCTTACAACCACTGCAGTGGGTGTTTTCTCAACCCGCTGTGAAAGGTCATCCAAGGCAGCTGTTCCTATTGAGTGATGGTATGGTTGCTAACACTGATGATGTCATACAGTTGGTGCGAAAGCAGTCAGGTACTACAAGATGCTTCACTTTTGGGATTGGCTCAGGGGTGTCCACTGCCCTTATAAAGGGTGTTATAAGAGCCTTAAAGCGGTCACTTCAAACTGTGATCTCAGATGTGAGTTTAACCTGGGACTCACCAAAAGGCTGGGCTGTACAGCAGATTCCCTCATCTCTACCTCCACTCTACAGTGGGGACAGGCTGGTGGTATATGGCCTTATGAAACCTTCAGAAAAAGCGATTCAAGGTGGGCAAACCGTGGTAAGACTACAGGGTACATTGACAAAGGATATAAAAGTGGAACATGCGATCAAGTTTCCAACTCCAACAGCAGCCATAACCACTGATACAGTTTTTGATCCCAATTCGAGTGCTATCCTACATGGTTTGGCAGCAAAATCCTTAATTCAAGTTAAACAAGATGAGCTTAGTGAGGATTCCGATGAGGAAACTGAGGAAGCCATTGTCAGTGTCAGCAAGTCAGCAAATGTAATATCAAAGTACACATCAATGGTGGCAGTCGATAAAGAGAATCACGAGCCTGTATCTGGACCTTTAATGAAACAAATGGTATCAGCTTTTGCAAGTTTGCACTCGTCACCGATGATGAACGCTACCAGAAACAAAGAACTGAAATGTACAAGATTTAAAGCCCTTCCAAATTCCTCTCCACTGGCAGGTCTGTGTGAAGATATTTCCAGCACACTCACAAACTCACCAAGTTCACCCTTTTTGTCATTGATATCACTACAGCAAGCCTCTGGTGCCTGGGATCTTACAGACGAATTGCTGGCACTATGCAAAGTAAGCAAGGATGCTGTGGTCACAGGATGCCCAAAGGAGATTGCAGTTGACACATCTAAAGGGAAGCTTTTATGGGCAACTGCCCTTGCTTTGGTGCTATTGAGGTGCAAGTTCTTGGATCAAGAGGATGAATGGGAGATGATCGCTGAAAAAGGAAAAAAATGGATGAACAAAAATCTACCAGCTGCTTTGAACTGCGAAAGTATGCTGCAATCTGCAACCGTAGTCATTGACGTTTAG

Transcript

amic_s0226.g5.t2

AGCAGCCTTCTATAATTCCAATCTCAATATCAACGATCTTGACTTCAAGTTTTCATCTCATTCAGGTGTATGCGAATTCAGTCATGTCTGAATCACACCCCGCAGTTGCAACAGTAATGTCTCTTCTTGTCATTGCGAGCATCGTGGGAAACATCCTCGTTTGCGCTGTGATAAAGAAGAACCGGGACATGAGGACTCCAATAAACTATTTACTGGTTAATTTGGCCGTGGCGGACATCCTATTTGCCATATTTTACATACCAAAGATCATCTTAGGCCAGACCTTCATCGAGCAACCTGAGGGAGTGGCTGGAGGGCTTTTGTGCACACTGTTGACAAATGGAACCCTGGCCTGGGTTGGTGCGTCTTCTACTGTCCTGACCCTTGTAGCCATAGCTACCGAACGCTATTATGTGATTGTTTATCCTTACAGGAACACAGGAAAAATAACTATGTGCAAATTGAGGTTTGTTTTACCTGGTATTTGGATTCTTTCGGTGATTCTTCAAATCAGAGAGTTTGGAAAAGAAGTTGACAACAACACATGCATTTACCTGTGGTCAGATGAGTTTGTCAAAGGTGTGAGTGTCGTCTTGCATACCATCGTGTTCCTTTCCTCCGTGCCTATGATCTTTTTATACACCAGAGTGGTTTACACTTTGTGGTTCAAACGTAATGATGATAACAAGCTCACGTATCATCAGCAGGGTGTGTTGAAGATGCGGAAGAGAGTCACCTTGATGGTAATCACCATCAGCGTTATTTTTGCTGTTTCCTGGAGTACCCACTCAATTCTTCACATCTTAGACGACGTCAGTGCCTACGCCCTCAATCCTTTTGCAATTCCCATTTCTCATGTAACGCTTATGTTTAATTCCGCTGTCAATCCGTTTGCATACGCTCTAATAAACCAACGATTCAAGGAGAAGATCAAGCAAATGATATCCTGCAAACAATCGAGGGTTCACGTCGTAAAGAAATCCCAGGATATTAAAATGGGTAACAAAACAACTCTACCAACACTTGATCCTTGCTCCGGACAGTGTGGAAAGGCAACAAATGAAGACGCTGCAGTGTGTGGATTTCAAGCGATCATCGACGGTCGAACCATTGTGGCCGAGGTACAAGACGAGGAAGAAGCTCTAGGTACCTACGAAGATGCTCTTAGTAGCGGACAGAGTGCGTTTCTGCTCGAAGAAAGCGACGAAAGCTCGGATACTTTTCAGATAAGTGTTGGGAATTTACCACCGAAGAAGGAAGCTCTTGTAGAGCTCCGTTTTCTTACAGAGCTGTCAGTAGAAAGTGAAGGCCGAGTGGTGTTTGTGCTTCCAACAGTCCTGAATCCCAGATATTCCCCAGCGCACACCGCACCAAGTCTCAGCTCTCAAATTCCTAGAGTTTCCACCGTCGATTCACCTTACTCCTTTACGTTTCAGATGAAAGTGAAAGCTATTTCCGCTATCACTGAAATCTCTTCCACATCCAACACGTTGAAAGTTGAAGTCGACGAAATCAACAAGGCGCAGGCAACAGTTTCTCTAGCAGAACCACACAACTTAACACAAGATATCGTGGTTCACATTTTGGCACAGGAGCCCTTCAAACCACAAGCAATCGTTGAAAATGGTATCAAAATAGAGGGTAGAGAAGATAAACAAGGTTTCATGGCAAATCCAGTCGTTATGCTAAATTTCTTTCCTGAATTCAAAAATCCCGAATCGTCTGAAGTGGGCGAATTTGTGTTTGTGATTGATCGCAGTAGTAGTATGGGCGGACACAGGATGGACGGCGCTAAAACCACCCTGTTGTTGTTTCTCAAGAGCTTACCTGACGGCTGTTTTTTTAATGTGGTGGGGTTTGGAAGCAGTTTTAAAATTCTTTTTGCAAAGAGCCAGCCATACAATGATGAAAACTTGAAGAAAGCGACTGATTTGGCCCAGAAAATGACGGCTAACCTCGGTGGCACAGAAATCTTACAACCACTGCAGTGGGTGTTTTCTCAACCCGCTGTGAAAGGTCATCCAAGGCAGCTGTTCCTATTGAGTGATGGTATGGTTGCTAACACTGATGATGTCATACAGTTGGTGCGAAAGCAGTCAGGTACTACAAGATGCTTCACTTTTGGGATTGGCTCAGGGGTGTCCACTGCCCTTATAAAGGGTGTTATAAGAGCCTTAAAGCGGTCACTTCAAACTGTGATCTCAGATGTGAGTTTAACCTGGGACTCACCAAAAGGCTGGGCTGTACAGCAGATTCCCTCATCTCTACCTCCACTCTACAGTGGGGACAGGCTGGTGGTATATGGCCTTATGAAACCTTCAGAAAAAGCGATTCAAGGTGGGCAAACCGTGGTAAGACTACAGGGTACATTGACAAAGGATATAAAAGTGGAACATGCGATCAAGTTTCCAACTCCAACAGCAGCCATAACCACTGATACAGTTTTTGATCCCAATTCGAGTGCTATCCTACATGGTTTGGCAGCAAAATCCTTAATTCAAGTTAAACAAGATGAGCTTAGTGAGGATTCCGATGAGGAAACTGAGGAAGCCATTGTCAGTGTCAGCAAGTCAGCAAATGTAATATCAAAGTACACATCAATGGTGGCAGTCGATAAAGAGAATCACGAGCCTGTATCTGGACCTTTAATGAAACAAATGGTATCAGCTTTTGCAAGTTTGCACTCGTCACCGATGATGAACGCTACCAGAAACAAAGAACTGAAATGTACAAGATTTAAAGCCCTTCCAAATTCCTCTCCACTGGCAGGTCTGTGTGAAGATATTTCCAGCACACTCACAAACTCACCAAGTTCACCCTTTTTGTCATTGATATCACTACAGCAAGCCTCTGGTGCCTGGGATCTTACAGACGAATTGCTGGCACTATGCAAAGTAAGCAAGGATGCTGTGGTCACAGGATGCCCAAAGGAGATTGCAGTTGACACATCTAAAGGGAAGCTTTTATGGGCAACTGCCCTTGCTTTGGTGCTATTGAGGTGCAAGTTCTTGGATCAAGAGGATGAATGGGAGATGATCGCTGAAAAAGGAAAAAAATGGATGAACAAAAATCTACCAGCTGCTTTGAACTGCGAAAGTATGCTGCAATCTGCAACCGTAGTCATTGACGTTTAGGTATCTTTCTCTCTGTATTCATATCTTAGCTGAAAAACGTTAGGTGGAGAAACCACAAAAAGTAGAAGATGTTCGATTTTAATGTTTATCCAGTTCACGGTACTTTTAAGATAAAACGTATGGACTCCATTATCTTCGCAAACTTAAGTGTTTTTTTTTTAATTGTAAATCTTATTCCAAAGGACAATAGAACTTTGATTAAGAAACAATGCTATTCCAGAATCTTCTACGAGCTAACGTCATTGTAGAGCAGGTCATCTATTTGAGATTGAAGAAATAAAAACAGAATTCCTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00534	von Willebrand factor A domain-containing protein 5A OS=Homo sapiens OX=9606 GN=VWA5A PE=1 SV=2
Q75WE7	von Willebrand factor A domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Vwa5a PE=2 SV=1
Q99KC8	von Willebrand factor A domain-containing protein 5A OS=Mus musculus OX=10090 GN=Vwa5a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001087 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13768 all species →	VWA_3	von Willebrand factor type A domain	Domain	Interproscan
PF08487 all species →	VIT	Vault protein inter-alpha-trypsin domain	Family	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR013694 all species →	Domain	VIT domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45737 all species →	VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0226.g5.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.