Gene detail

Detailed information of amic_s0230.g21.t1 in Acropora microphthalma

Genomic Location: sc0000230_pilon:317673...330545
NR annotation: XP_044183530.1, uncharacterized protein LOC122964108 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0230.g21.t1

ATGCGACTCCTCTTTGTCGCGATTCTCTTCGCTGGAGCAGTAACAAATGCTTTGGATGACTCTTTTAGCATTACAACAGAAGAAGACGAACCAGTGACATTTGACTTTCTCAAATACAATCACGCCTCCGTCAAACTTGCGCCAAAAGTCGTCATCGTCGAGCAACCGAAACATGGTGCATTCGCTACAGCGCCAGATGGCAGTCTCAATGTTCAAAACGAAATGTGCGATGCTTATGCAACTTACATTCCCAATAAGGACTTCTCAGGCGAAGATGTCTTTGTGTACTCGTACCTTTACGAAAATCTCACGACCACTTCCGATGGGGCACTTCAAGCTCGAATTATTGTGCGACCAAAGCCCGACACTATTGTGGCAAAGTCTGACGAGGTTACCATGACAACGGAGGACGGACGTATACACATTCCAGTGCTGCAGAACGATTACAGTAAGGATAGGTCCGCAGTGTGTATAACTAAGGATGAGAAGCGATATTCTGAGGAAAAGCAGGGAAAGTTTGAAGACATTGCCCAAAGGCTTGGTATGACAGCCATAATGCAGAAACCACCAAAAGCCCCAGACTGCCTGTTTGACCAGTTTGATCCAAACCTGAAAATCTGGATCCCTGGGTCGTTTTGTATCGTCGAAATCAGCGCAGGTGGTGCAGCAGCCGCTGACTACGATGGTGACGGGCTCATTGATATTTACTACGCGCGCATGGATGGTCCAGATCAGCTATGGCGTAACCTTGGCAACGGCACATACCAGGACTACACGGCCGAAGCTAACCTGAGTTCAACTGCTTTCCATCGCTCGTCTGCGGCGGCTTGGTTGGACATCGACAACGATGGCGACCTGGATCTGTATATCGGTACCATGGCTGAAAGCAGGTTCTATCTTTATATAAACGACGGTATGGGTCATTACTCAGAGGACGCTGAGGAGAGAGGCCTCGCTTTGCACCCTCAAATACCTCCCTTCAAAACGAGCACCATGACCATCGCTTTTGGAGACTACGACAAAGATGGCTGGCTGGACATTTACACGACCGAGTGGTTACCGCATCTTGACCTTAGCTTTGACTACAACAATCATTCGCACTCGAACGTCAAGTTGCTTAGAAACCTCGGCGCGGAAGGCAAACCGGGATACTTTGAAGACGCGACAGAACGAGCGGGATTGGCCAAGACAACGGAACCGAGTGTAGATGCGGACAAGTTTGGAGGCGTGGATGTCCGTTACTATGGAGTTATGAACACAGGCTTACTAAAGGACATCATTCCAGGGCCTTTCAAGTTGGCTGCCCTGTTCACTGATCTAGACGGCGATGGCTACCAAGACCTTGTGCTAAACGGGGATTTTCGAACAAGTGATGTCTACTGGAACAATGGAGACGGAACATTCACGAGGGGGACTAAGGAGAGTAATTTGGGAACGGACGAGAATGGCATGGGTTCCACGGTGGCGGACTATGATATGGACGGCCGTCAAGACTGGTTCGTTGGCAGTATCTACATGTCCAAGACACAGATGGAACCTTTCAGGGAGGTTTACCTTGGCGGAGGGATAATATTTGGACACACCGGAAACAGGCTTTTCAGGAACGAAGGTGGTCGCAAGTTTTCCGACCGCACAGACGAGGTCGGGGTTCGATACGGAAACTGGGCCTGGGGCGCGGCCTTCTTTGACTACGACAACGATGGTGACCTGGACCTGATTCACACAAATGGTTTTGATGACCCCGATGTAACTGACACAGACTTCCTCCACCACACTCCGACGCGTCTCTATGACAACATGTTCTTCGAAGACGACGACGGGTCTGCTCGTTTTGTGGAAACAGGTTTTAATCGAGGCGTGACTGATGTTTTTGACGGCCGAGGCCTTCTTGTTTTTGACTACGAAGAAGACGGTGACTTGGACGTATTCATCTCAAACAGTGCAAACCGTCCGGTCTTATATCGCAATGATGGAAATAACAAGAAAGATTACATTCGAGTCACTGTTCTTGAGGCCAGTGTTGATAGAGAAAGCATCGGCGCGATGGTTTATCTGTATTCACCGAGGCTGAAGAGAGAGGTCATGCGCGAAATCCGAACTGCATCCGGATTCGCAGCTCAGGGCGAATTCGTTGCACACTTCGGTTTGGGTTCGGAAACCGAAGATACCTTCCGAATCCGTATCTACTGGCCAGTCACAAACAACACTCGTATTGTTCATAACGTTCCTCGTCGATCGTCGATCACTGTTCGGGATATCTGGGGGCATCGCAATGCCATCGAAGAAACGAAGAGTCCGAGTGAGTCAGCACCAAGCTGCACTCGGCTACTAGTGAAGGAGATTACCCGCGCACCAGCGCATGGGCAAGTGGTGGTGGGACCCAAACACGTGTCGTATTATCCTGACGCAGATTTTGCTGGAGAAGATAGCTTTAATTATGCTGTGGGCGACGGCATAAGCACCGCTATAGCTACAGTCAACGTGAAGGTCACTAAAGTGGATAAACCAGTTCCGTCTTCGGAGCAATTAGCAGAGAAGTTCCCTCGTTTGGATGGAGTCTTCAACAATCCCACCCACCCTGAGTGGGGAAAACCATTCATGCCCCTACTGCGCCTGCTCAGTCCGGCTTACGATGATGGCTTTGATGCGCCCGCAGGCCCCGACAGAGCTAGCCCACGACTTATTTCTAACGTTGTCTGTGACCAGCGGACTGAAGTCTTCAGTGAGCCCGGCTTGAATGACTTTCACATGCATTTTGGACAGATGTTGGCTCACGATACCGACTTTGCTACACCGTATGCAAATTTCCTGACCACCGATAACTTAGGGATTCCCATTCCCGAGGGCGACCCGTGGTTTGACCCGCACGGCTCAGGCAAGGAGATAATGCGATTCAGACGATCTGCGACAATACAAACCAGTGGTAAACTCCATGGCAGACCAAGAGAACAGGTGAACAAGGTCACAGCTTTTGTCGATCTTTCTCTGGTGTATGGCAGTGATGAAGGCAGAGCTCTGGCTTTGCGTACAATGAAGGACGGTAAGCTGAAACATCAAACTTCCGACGTCCTTGACTTCAACAAAAACGAACTCACCAATCTCAACTTGTTGAATGGACCACGTGACAAAATGCTCGTGTCGGGTGACAATCGAGTGAACGTGCAGCCAGGCCTCATCGCTTTACATACACTGTGGTCACGTGAACACAATAAAATCTGCGACGAGCTTCTCCAGCGGCCTGGATACGAGAATATGGACGATGAAACCCTGTTCAATCATGCCCGCACTTTGGCCCGCGCAAAATGGCAAAAGATTGTCTGGACGGAGTTCCTTCCAACGGTCATCGGGCTTCAAGAGCACAAGAACCTTGGAGAGTACAAAGGTTATAACTCGTCAATCCATGTGGGCATATTCAACGAGTTTGGCACCGCAGCTTTTAGATTTGGTCACAGTCAAATCGGTAACGTAATGCCACGATTGGACGAGAATTGGACAATGATTGGCAGCGGTCATTTATCTCTACGCGACGCTTACTTCAACCCAGGACGCGTGCTCCACGAGGGTGGCATCGAACCGCTGATCCGAGGAATGATGGTCCAGAGGGCTCAGAAAGTTGATCTCAAGTTTTCGGATTCCGTGCGCAACTTTCTTTTTGGAACCAATACAATGGGCCTTGATCTGGTGGCTCTTAATATTCAGAGGGGCCGAGATCACGGCCTGCCTGACTACAACACAGTTCGAGAAGGCGTCGGGTTGCCAAAGCATGCTTCGTTTGCAGATATAACCCCTGACAAGTCCTTGCAAGAGAAACTACAAAAGGTGTACTCCAGCGTAGACGATATTGATTTATGGATCGGGGGACTAGCAGAGGAGCACGTCGAGGGAGGGTGTGTAGGGGAAACTTTTGCCCGCATCATCGCTCTTCAATATCGGGTGTTGCGTGACGGCGATCGATTCTGGTATGAAAACAAAGACACTAACCTGTACTATATGAAAGACAGGACCAATATACCGACAGAAGGCACCAGCATGGTGGATGTGTTGTACAGAAACACAGGAATAAAATGGAAAGGATCACCATTTTTCGTAAAAGCCATGTAA

Transcript

amic_s0230.g21.t1

TTACAGTAGGCAGAGAGTCTCTGAAGGCTTAGGCCAACAACACTGGAAAACCAGTCTCGAGGATAACAAGCTCATCTGCGTTTCGCATCTTGAAAATGCGACTCCTCTTTGTCGCGATTCTCTTCGCTGGAGCAGTAACAAATGCTTTGGATGACTCTTTTAGCATTACAACAGAAGAAGACGAACCAGTGACATTTGACTTTCTCAAATACAATCACGCCTCCGTCAAACTTGCGCCAAAAGTCGTCATCGTCGAGCAACCGAAACATGGTGCATTCGCTACAGCGCCAGATGGCAGTCTCAATGTTCAAAACGAAATGTGCGATGCTTATGCAACTTACATTCCCAATAAGGACTTCTCAGGCGAAGATGTCTTTGTGTACTCGTACCTTTACGAAAATCTCACGACCACTTCCGATGGGGCACTTCAAGCTCGAATTATTGTGCGACCAAAGCCCGACACTATTGTGGCAAAGTCTGACGAGGTTACCATGACAACGGAGGACGGACGTATACACATTCCAGTGCTGCAGAACGATTACAGTAAGGATAGGTCCGCAGTGTGTATAACTAAGGATGAGAAGCGATATTCTGAGGAAAAGCAGGGAAAGTTTGAAGACATTGCCCAAAGGCTTGGTATGACAGCCATAATGCAGAAACCACCAAAAGCCCCAGACTGCCTGTTTGACCAGTTTGATCCAAACCTGAAAATCTGGATCCCTGGGTCGTTTTGTATCGTCGAAATCAGCGCAGGTGGTGCAGCAGCCGCTGACTACGATGGTGACGGGCTCATTGATATTTACTACGCGCGCATGGATGGTCCAGATCAGCTATGGCGTAACCTTGGCAACGGCACATACCAGGACTACACGGCCGAAGCTAACCTGAGTTCAACTGCTTTCCATCGCTCGTCTGCGGCGGCTTGGTTGGACATCGACAACGATGGCGACCTGGATCTGTATATCGGTACCATGGCTGAAAGCAGGTTCTATCTTTATATAAACGACGGTATGGGTCATTACTCAGAGGACGCTGAGGAGAGAGGCCTCGCTTTGCACCCTCAAATACCTCCCTTCAAAACGAGCACCATGACCATCGCTTTTGGAGACTACGACAAAGATGGCTGGCTGGACATTTACACGACCGAGTGGTTACCGCATCTTGACCTTAGCTTTGACTACAACAATCATTCGCACTCGAACGTCAAGTTGCTTAGAAACCTCGGCGCGGAAGGCAAACCGGGATACTTTGAAGACGCGACAGAACGAGCGGGATTGGCCAAGACAACGGAACCGAGTGTAGATGCGGACAAGTTTGGAGGCGTGGATGTCCGTTACTATGGAGTTATGAACACAGGCTTACTAAAGGACATCATTCCAGGGCCTTTCAAGTTGGCTGCCCTGTTCACTGATCTAGACGGCGATGGCTACCAAGACCTTGTGCTAAACGGGGATTTTCGAACAAGTGATGTCTACTGGAACAATGGAGACGGAACATTCACGAGGGGGACTAAGGAGAGTAATTTGGGAACGGACGAGAATGGCATGGGTTCCACGGTGGCGGACTATGATATGGACGGCCGTCAAGACTGGTTCGTTGGCAGTATCTACATGTCCAAGACACAGATGGAACCTTTCAGGGAGGTTTACCTTGGCGGAGGGATAATATTTGGACACACCGGAAACAGGCTTTTCAGGAACGAAGGTGGTCGCAAGTTTTCCGACCGCACAGACGAGGTCGGGGTTCGATACGGAAACTGGGCCTGGGGCGCGGCCTTCTTTGACTACGACAACGATGGTGACCTGGACCTGATTCACACAAATGGTTTTGATGACCCCGATGTAACTGACACAGACTTCCTCCACCACACTCCGACGCGTCTCTATGACAACATGTTCTTCGAAGACGACGACGGGTCTGCTCGTTTTGTGGAAACAGGTTTTAATCGAGGCGTGACTGATGTTTTTGACGGCCGAGGCCTTCTTGTTTTTGACTACGAAGAAGACGGTGACTTGGACGTATTCATCTCAAACAGTGCAAACCGTCCGGTCTTATATCGCAATGATGGAAATAACAAGAAAGATTACATTCGAGTCACTGTTCTTGAGGCCAGTGTTGATAGAGAAAGCATCGGCGCGATGGTTTATCTGTATTCACCGAGGCTGAAGAGAGAGGTCATGCGCGAAATCCGAACTGCATCCGGATTCGCAGCTCAGGGCGAATTCGTTGCACACTTCGGTTTGGGTTCGGAAACCGAAGATACCTTCCGAATCCGTATCTACTGGCCAGTCACAAACAACACTCGTATTGTTCATAACGTTCCTCGTCGATCGTCGATCACTGTTCGGGATATCTGGGGGCATCGCAATGCCATCGAAGAAACGAAGAGTCCGAGTGAGTCAGCACCAAGCTGCACTCGGCTACTAGTGAAGGAGATTACCCGCGCACCAGCGCATGGGCAAGTGGTGGTGGGACCCAAACACGTGTCGTATTATCCTGACGCAGATTTTGCTGGAGAAGATAGCTTTAATTATGCTGTGGGCGACGGCATAAGCACCGCTATAGCTACAGTCAACGTGAAGGTCACTAAAGTGGATAAACCAGTTCCGTCTTCGGAGCAATTAGCAGAGAAGTTCCCTCGTTTGGATGGAGTCTTCAACAATCCCACCCACCCTGAGTGGGGAAAACCATTCATGCCCCTACTGCGCCTGCTCAGTCCGGCTTACGATGATGGCTTTGATGCGCCCGCAGGCCCCGACAGAGCTAGCCCACGACTTATTTCTAACGTTGTCTGTGACCAGCGGACTGAAGTCTTCAGTGAGCCCGGCTTGAATGACTTTCACATGCATTTTGGACAGATGTTGGCTCACGATACCGACTTTGCTACACCGTATGCAAATTTCCTGACCACCGATAACTTAGGGATTCCCATTCCCGAGGGCGACCCGTGGTTTGACCCGCACGGCTCAGGCAAGGAGATAATGCGATTCAGACGATCTGCGACAATACAAACCAGTGGTAAACTCCATGGCAGACCAAGAGAACAGGTGAACAAGGTCACAGCTTTTGTCGATCTTTCTCTGGTGTATGGCAGTGATGAAGGCAGAGCTCTGGCTTTGCGTACAATGAAGGACGGTAAGCTGAAACATCAAACTTCCGACGTCCTTGACTTCAACAAAAACGAACTCACCAATCTCAACTTGTTGAATGGACCACGTGACAAAATGCTCGTGTCGGGTGACAATCGAGTGAACGTGCAGCCAGGCCTCATCGCTTTACATACACTGTGGTCACGTGAACACAATAAAATCTGCGACGAGCTTCTCCAGCGGCCTGGATACGAGAATATGGACGATGAAACCCTGTTCAATCATGCCCGCACTTTGGCCCGCGCAAAATGGCAAAAGATTGTCTGGACGGAGTTCCTTCCAACGGTCATCGGGCTTCAAGAGCACAAGAACCTTGGAGAGTACAAAGGTTATAACTCGTCAATCCATGTGGGCATATTCAACGAGTTTGGCACCGCAGCTTTTAGATTTGGTCACAGTCAAATCGGTAACGTAATGCCACGATTGGACGAGAATTGGACAATGATTGGCAGCGGTCATTTATCTCTACGCGACGCTTACTTCAACCCAGGACGCGTGCTCCACGAGGGTGGCATCGAACCGCTGATCCGAGGAATGATGGTCCAGAGGGCTCAGAAAGTTGATCTCAAGTTTTCGGATTCCGTGCGCAACTTTCTTTTTGGAACCAATACAATGGGCCTTGATCTGGTGGCTCTTAATATTCAGAGGGGCCGAGATCACGGCCTGCCTGACTACAACACAGTTCGAGAAGGCGTCGGGTTGCCAAAGCATGCTTCGTTTGCAGATATAACCCCTGACAAGTCCTTGCAAGAGAAACTACAAAAGGTGTACTCCAGCGTAGACGATATTGATTTATGGATCGGGGGACTAGCAGAGGAGCACGTCGAGGGAGGGTGTGTAGGGGAAACTTTTGCCCGCATCATCGCTCTTCAATATCGGGTGTTGCGTGACGGCGATCGATTCTGGTATGAAAACAAAGACACTAACCTGTACTATATGAAAGACAGGACCAATATACCGACAGAAGGCACCAGCATGGTGGATGTGTTGTACAGAAACACAGGAATAAAATGGAAAGGATCACCATTTTTCGTAAAAGCCATGTAACACTTTGCAACGAAACCCAGTTCAAAGAGACACGTGGTTCGTTGGTGAGATGCTGTCAATCAATCAATCAGTCAACCTGAGTGAATCCTGGATAGACATGTGACAGCAACGTGATCACATTCACGGGAACACGTGATATATATAGGAACCCTCCAAAATTACGGCGCTAAGTCGCAGAAATCGTTTAGGTTTATTATTCGCCTTTAGTTACCAATATGAAATACAATTTGAGTTGAAAACATGACCGAAACATGAACTCTGTTAAACTTCTACATAGTATTTTCACATTATACCATAGAATGTATTAAAATAAGACACTCCTTTAAACGAAAGTAAGTTAGCTGTAATGCCAACGATGTTATAAAGTTAAAAATTTGCTTTTCTTTGATAGGTAGGCTATGCACGCCGGCCTTCAAAATGAAGCAGGGGGAAAGCTTGCGATTGCAGACAATTCGGTTTTCTTCTGATAGAAAAAAAAAACACATTGTCTCTGATTGGTTCGTGCAAAAACACAAGTTTTCGACTAGTTGCTACCTGATAAGTTTACACCACGTTTAGACTTCAATCAAAAGCACATTGTCAACTGAATTTCGACTGTACCAGAATACACTAGAGGACGACTGTTTGTCCTTGGCTGTTGAAATCGAACGAAATTCCTTCATTTTCAACGCTGAAAATTCAAGCGAGTTCACAGGTTAAGCTAGCAATGTATGTAATCGCACTAGCTCGAGATAAACTCGCCTTTGGACTCGATTTGAAGAGGAGGCTGATGTTGCGATTTCCTGTTGTTGTCTCGTCGCCTAAAACATTTACCTACTCGAATATTTTATGTAGCTTCATCTGTACATTACCAAGTATACGTATTTATTACCCACATTAAAAAAAAATCAACAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6TMK4	Peroxinectin A OS=Dictyostelium discoideum OX=44689 GN=poxA PE=1 SV=1
Q9VZZ4	Peroxidasin OS=Drosophila melanogaster OX=7227 GN=Pxn PE=1 SV=1
Q3UQ28	Peroxidasin homolog OS=Mus musculus OX=10090 GN=Pxdn PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008472 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13517 all species →	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan
PF17963 all species →	Big_9	Bacterial Ig domain	Domain	Interproscan
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF07593 all species →	UnbV_ASPIC	ASPIC and UnbV	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013517 all species →	Repeat	FG-GAP repeat	Interproscan
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR050702 all species →	Family	Peroxidase Activity and Reactive Species Generation	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR011519 all species →	Domain	ASPIC/UnbV	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11475 all species →	OXIDASE/PEROXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0230.g21.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.