Gene detail

Detailed information of amic_s0231.g6.t1 in Acropora microphthalma

Genomic Location: sc0000231_pilon:113866...169749
NR annotation: XP_044175641.1, Golgi apparatus protein 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0231.g6.t1

ATGGGGTGTTTCGGCAACAATAATAACGAAGATGAGAAGAAACAGAAAGATACCAGCAAAAGGATCGAAAAGCAGTTGAGGGACGATAAAATTGCATATCGTGCGACTCATCGCCTTCTTCTACTTGGCGCTGGAGAATCAGGCAAAAGCACCATCGTCAAACAGATGAGGATCTTACACGACGTGAATGGCTTTACGGAACAGGAAAAGAGACAAAAAATAGAAGATATTAAGAAAAATATTAGAGATGCGATATTGACCATAACAGGAGCTATGTCGACGTTAACACCGCCAGTAAAGTTAGCAAACCCCAATAACCAGTTTAGAATCGACTACCTTCATGAAGTAGCTACGACGCCCGACTTCGACTATCCCCCGGAGTTCTACGAACACACGAAAATCTTATGGCAAGACGCTGGAGTTCTAGAATGCTTCGAACGATCGAACGAGTATCAGCTCATCGACTGCGCACAATACTTTTTGGACAGGGTTGATACAGTCAAGCAGGCAAATTATTTGCCAGTGGAGCAGGACCTACTCAGATGTCGAGTGTTGACATCAGGAATCATTGAAACCAGATTTCAAGTTGACAAAGTCAAGTTCCATATGTTTGATGTTGGTGGCCAGAGAGATGAAAGAAGAAAATGGATACAGTGCTTCAATGATGTTACAGCTATAATTTTTGTGGTTGCGTGCAGTAGTTACAATTTGGTACTAAGAGAAGATCCAAGCCAGAACCGGTTGAAGGAATCTCTTGAGTTGTTCAGAAGTATTTGGAATAACAGATGGTTGAGAACAATCTCAGTAATATTGTTTCTCAACAAGCAAGACTTGTTAAAAGAAAAGGTACGGGCTGGAAAGTCCAAGATTGAGGACTATTTCCCGGACTTTGCTCGATACAGAACTCCTCCTGATGCCACGGCAGAGCCTGGTGATGAAGAAGCAGTGACAAGAGCGAAATATTTTATTCGTGACGAATTCCTTGCTGCGAGGGAAGAAGGCCAATGCCGAAAACTAAAGATGGCGACGTTTCATTTCGTTGTATCTTTGGGAATAATTGTTTTAATCACAAGCTGTTTGGTCCATTCTGGAAAAATTCCTCCTAAAACCGACAGTCCTAAAGATAAAGATGATTCAGTGAAATTGAAAGATGATCGAAACGAACACGAACAGGAAGACCAACAGAAACCAGGCGAGAGAGATAATGAAAGGGAAGAAGAAAAAGGTCCTGAAACGCGGGAAGATCACAGAGGAAGCCAAGACGAAGAAAAGGCAATGAACGACAATCAAGATAATGCTGATGTGCGTCATGTTGCAAGTGAAGATGGCAAAAAGGGCAACAGTCCTAAACTGCGATTTGTAGGAGGAAAACAAAGGCTTGATGACGACCAGTCACATTGCACAGAGGACATTGCTCGCTTGTGTCCAGAAATCCCCAAGGGAAATAACTTTGCTCTTCTTGTGTGTTTGCAAGATAAGGCGAAGGAAGATGATTTGACAACAGAATGTCACCATATGCTGTGGGATTATAAAAGGACATTTTCAAAAGATGAAAAATTTGAAAGATCTGTTGCAGATAAATTTTGTGTAGCTGATTTAAAACAATTACCAGAGTGCAACAAGCAGGGAAAAATCATTGCTTGCCTTTTGGAACATCGAGAGAATTTAACAACAGCTTCATGTAAACACATGATGACCAAAATGCAAGCTATATTTTTCAGCAATTATCTCTTAATTGAGAATTTCTTAGATGACTGTGCTAAGGATGTGAAAGAGCGACGTTGTGGCAGACTACAGACAGAAGGGGATGACGAGGATATTCATCAACAAAATGAAGTGATAGAATGTCTTGAGGATCACCAAGAAGATCTTGCAAAAGACTGCCAGAAGCAAATATTCCGACTTGCAGAGTTATCGTCTGATGATTACCATCTTGATAGACCTCTGTTCTACGCTTGTAAAGATGACAGGGAGATGTTTTGTGAAGACGTACAGTCAGGCGAGGGTAAAGTGTACAAATGTTTAAAGAAACACAAAACTGATGGCAGAATGAGTGATGAGTGCAGAAAAAAGTTGACAGAGAGGCAGAAACTGGAAGCCAACGACCCAAAGGCCAACTATCCCTTGATGAAGAACTGCTTCAAGTATTACCAGCAGTACAAAGACCAATTTAATTGTGAAAGAGGAAAAACAAAACATGGAGCCCTAGCCAACATCCTTGTTTGTCTGGAGAAAGCTATGGATGAAGGTCAAAAAGTGGGTGGTAAATGTCAAGCGGAGTTATATGATCTTCGACAGCAGATGATGGAAGATTATGCCATCAATCCCAAGCTTGTTGCTCAGTGTGACGTGGAGATAGAGAAACACTGCGGTGGAGGCAAGGGCAATGGAGGAGAAACTATTGACTGTTTGATGGGACTCGCTGAAGAGAACGAAGGCAAAACGGACATAATAAGAGAAGGCTGTTTTAAAGCTATTGAATTGCTGTTGGAAGAAACAGGTGCTGGAAAGGATTACCGTATCGATCGCACCCTGTACCGTGCATGTGAACCCGTTATCGAAACGAAGTGCAAAGATAAGGGCAAAAAGGAGGGAGATGTCATGGTGTTATCTTGCCTCATGGAGAATCTTCATACAGACAGCATAACACCAGAGTGTGAAGAACAACTGTTACACTTGGAATTTTTCATTGCGCGTGACTTCAGCATTGATGCTGAATTACAGGAAGTCTGCAAGGATGACGCGAAATCTGTTTGCCTTGTTTCGTCCATGGATGACGCAGAATCAAATCCAGGAAGCCTAGTGCTTTCTTGCCTTTATAGGAATTCCCTCATTGAGAGAGCAGAACCACGGGTTTCGGCCAAGTGTGCTTCCCATGTGCAACGTGTAATGCACCAAAGGGCTGTGGATGTTCACCTGATGCCTGAAATTCAGATGAATTGCATTCAGGATCTTGCACAGCACTGCAATGATAGGCTTAATAACGGAGAGGAAATAGAATGTTTACAAAATACATTCGAAGATCTTAGTGAGGAGTGTCAACATGCGATCTCCAATTTTACAGAAGAGGAAGGGGAGGATTACAAGCTCGACAACACTCTGGTGCGTGCATGCCATGGCATGGTGACTAAATTCTGCGAAGAAGTTGTTGCTCAAGGAGAGACGGACGGAGTTCTGCCTTGTTTGATTGAACACAAAAACGATCCAGATATGGACGAGAAGTGTCATGCTTCCATTGAACACTGGCAGCTGATTGAGAGGAAAGATTTCAAATTCTCTGCCGAATTTAAGAAGGCTTGTCGAAGGGATGCTCAGAAACTCTGCAGTGATGCTAAGGAGAAATTTAAGCTGGTCGAATGCCTCAGTTCCAAAATCCGCGACGCTGTGTTGAAAGAAGAGGAACACGTTGTTTCCGACCAATGTCGTCTTCAGTTGAAGGTTGCGAAGGAAGAGGAGTCTGAAGATGTTCGCCTTGACCCAGTCATATTTGACGCGTGTTCGGGCGACATAAAAAAGTATTGCAGCGATGTCAGTTTCGGACAAGCAAAGGTTCTGGAATGTCTCAAAGAGAGGAGGAAAGAGTTATCATACAATTGTAAAGAAAGTGTTCTCCAGCGAGAGGAGGAAGCGATGCAAGACCCCGAGGTGGATTACAAGCTTGAACGATCTTGTCGCAAAATGATCGTGTTATTCTGTAGCGATGTGAAGCCATCACAGATATTTTCTTGCCTCAAAAAGAACAAGAACGATCAACAAATGGAACGCAGTTGTAAAGATATCATCATCAAACGGCAGATAAGGCAATCGGAAGATGTTAGACTGAATCCGCAGATACTTAACTTCTGCGCGCTAGACCTCCCGAAATTCTGCCCAGAACCACATAAAGGCGAAGGAAAAATCATCGCTTGCCTCAAGAAACACGTAGATAACCTTTCTGACGAATGCCGGGAGTATACCGAACAGCTCATGCGCGCAGCAGCACATGACTACAGAATGGACGCCAGGCTTGTCGCAGAATGTGGAGATGAGATGAAGAGACTTTGTAAGAAAGAAGCGCCTTCCCAAGTAGAAGATTGCCTTAAAAAGAATTTAGGATCAATTCGTTCCAAAACTTGTCGTGTGGAAGTGTTTCGTCTCATGAAAGAAGGTCGCACTGATATCATGTCCGATCCGGTGTTGTATAGCGCATGCTCACTAGAGGTCCAGCGATATTGTTCGCAAATTCCATTTGGCAGAGGAAAAGTTGTGAAATGTCTCTTAGATGCTTTTAAATCAAACAGTGACAGTTTCGACCGAGAATGCCACTTTCAACTGGCGTCTCGACGAGCTATGTGGGGTCAGGCTGTCAAGGTTTTGCCTGGCGAATCACTTGGTGACCTTGCTGCCTTCGTGGTCGCTTCCCCTTCCAAGAACTATTTCTTTATTGTTTTTGCAACTGGTTTGGCACTTATTTTCGTCGGTGGCTTGGTATTTGGACGCTTGTCCAAGCGAATCAAGAGAGAGGTGAAGGATCGCTGA

Transcript

amic_s0231.g6.t1

CATTAGTTGAGCGATCGTTTGGCTGTGCTGTGTCTATACTTCCATACTTGCCTGCTTTCATCTTCGAAAAAAGAAACTTTTTATTTGGTGGTACGACGGGGGCGTTTTCCTCGTTCTGGAGTCGCACTTCTGTGCGATGGGGTGTTTCGGCAACAATAATAACGAAGATGAGAAGAAACAGAAAGATACCAGCAAAAGGATCGAAAAGCAGTTGAGGGACGATAAAATTGCATATCGTGCGACTCATCGCCTTCTTCTACTTGGCGCTGGAGAATCAGGCAAAAGCACCATCGTCAAACAGATGAGGATCTTACACGACGTGAATGGCTTTACGGAACAGGAAAAGAGACAAAAAATAGAAGATATTAAGAAAAATATTAGAGATGCGATATTGACCATAACAGGAGCTATGTCGACGTTAACACCGCCAGTAAAGTTAGCAAACCCCAATAACCAGTTTAGAATCGACTACCTTCATGAAGTAGCTACGACGCCCGACTTCGACTATCCCCCGGAGTTCTACGAACACACGAAAATCTTATGGCAAGACGCTGGAGTTCTAGAATGCTTCGAACGATCGAACGAGTATCAGCTCATCGACTGCGCACAATACTTTTTGGACAGGGTTGATACAGTCAAGCAGGCAAATTATTTGCCAGTGGAGCAGGACCTACTCAGATGTCGAGTGTTGACATCAGGAATCATTGAAACCAGATTTCAAGTTGACAAAGTCAAGTTCCATATGTTTGATGTTGGTGGCCAGAGAGATGAAAGAAGAAAATGGATACAGTGCTTCAATGATGTTACAGCTATAATTTTTGTGGTTGCGTGCAGTAGTTACAATTTGGTACTAAGAGAAGATCCAAGCCAGAACCGGTTGAAGGAATCTCTTGAGTTGTTCAGAAGTATTTGGAATAACAGATGGTTGAGAACAATCTCAGTAATATTGTTTCTCAACAAGCAAGACTTGTTAAAAGAAAAGGTACGGGCTGGAAAGTCCAAGATTGAGGACTATTTCCCGGACTTTGCTCGATACAGAACTCCTCCTGATGCCACGGCAGAGCCTGGTGATGAAGAAGCAGTGACAAGAGCGAAATATTTTATTCGTGACGAATTCCTTGCTGCGAGGGAAGAAGGCCAATGCCGAAAACTAAAGATGGCGACGTTTCATTTCGTTGTATCTTTGGGAATAATTGTTTTAATCACAAGCTGTTTGGTCCATTCTGGAAAAATTCCTCCTAAAACCGACAGTCCTAAAGATAAAGATGATTCAGTGAAATTGAAAGATGATCGAAACGAACACGAACAGGAAGACCAACAGAAACCAGGCGAGAGAGATAATGAAAGGGAAGAAGAAAAAGGTCCTGAAACGCGGGAAGATCACAGAGGAAGCCAAGACGAAGAAAAGGCAATGAACGACAATCAAGATAATGCTGATGTGCGTCATGTTGCAAGTGAAGATGGCAAAAAGGGCAACAGTCCTAAACTGCGATTTGTAGGAGGAAAACAAAGGCTTGATGACGACCAGTCACATTGCACAGAGGACATTGCTCGCTTGTGTCCAGAAATCCCCAAGGGAAATAACTTTGCTCTTCTTGTGTGTTTGCAAGATAAGGCGAAGGAAGATGATTTGACAACAGAATGTCACCATATGCTGTGGGATTATAAAAGGACATTTTCAAAAGATGAAAAATTTGAAAGATCTGTTGCAGATAAATTTTGTGTAGCTGATTTAAAACAATTACCAGAGTGCAACAAGCAGGGAAAAATCATTGCTTGCCTTTTGGAACATCGAGAGAATTTAACAACAGCTTCATGTAAACACATGATGACCAAAATGCAAGCTATATTTTTCAGCAATTATCTCTTAATTGAGAATTTCTTAGATGACTGTGCTAAGGATGTGAAAGAGCGACGTTGTGGCAGACTACAGACAGAAGGGGATGACGAGGATATTCATCAACAAAATGAAGTGATAGAATGTCTTGAGGATCACCAAGAAGATCTTGCAAAAGACTGCCAGAAGCAAATATTCCGACTTGCAGAGTTATCGTCTGATGATTACCATCTTGATAGACCTCTGTTCTACGCTTGTAAAGATGACAGGGAGATGTTTTGTGAAGACGTACAGTCAGGCGAGGGTAAAGTGTACAAATGTTTAAAGAAACACAAAACTGATGGCAGAATGAGTGATGAGTGCAGAAAAAAGTTGACAGAGAGGCAGAAACTGGAAGCCAACGACCCAAAGGCCAACTATCCCTTGATGAAGAACTGCTTCAAGTATTACCAGCAGTACAAAGACCAATTTAATTGTGAAAGAGGAAAAACAAAACATGGAGCCCTAGCCAACATCCTTGTTTGTCTGGAGAAAGCTATGGATGAAGGTCAAAAAGTGGGTGGTAAATGTCAAGCGGAGTTATATGATCTTCGACAGCAGATGATGGAAGATTATGCCATCAATCCCAAGCTTGTTGCTCAGTGTGACGTGGAGATAGAGAAACACTGCGGTGGAGGCAAGGGCAATGGAGGAGAAACTATTGACTGTTTGATGGGACTCGCTGAAGAGAACGAAGGCAAAACGGACATAATAAGAGAAGGCTGTTTTAAAGCTATTGAATTGCTGTTGGAAGAAACAGGTGCTGGAAAGGATTACCGTATCGATCGCACCCTGTACCGTGCATGTGAACCCGTTATCGAAACGAAGTGCAAAGATAAGGGCAAAAAGGAGGGAGATGTCATGGTGTTATCTTGCCTCATGGAGAATCTTCATACAGACAGCATAACACCAGAGTGTGAAGAACAACTGTTACACTTGGAATTTTTCATTGCGCGTGACTTCAGCATTGATGCTGAATTACAGGAAGTCTGCAAGGATGACGCGAAATCTGTTTGCCTTGTTTCGTCCATGGATGACGCAGAATCAAATCCAGGAAGCCTAGTGCTTTCTTGCCTTTATAGGAATTCCCTCATTGAGAGAGCAGAACCACGGGTTTCGGCCAAGTGTGCTTCCCATGTGCAACGTGTAATGCACCAAAGGGCTGTGGATGTTCACCTGATGCCTGAAATTCAGATGAATTGCATTCAGGATCTTGCACAGCACTGCAATGATAGGCTTAATAACGGAGAGGAAATAGAATGTTTACAAAATACATTCGAAGATCTTAGTGAGGAGTGTCAACATGCGATCTCCAATTTTACAGAAGAGGAAGGGGAGGATTACAAGCTCGACAACACTCTGGTGCGTGCATGCCATGGCATGGTGACTAAATTCTGCGAAGAAGTTGTTGCTCAAGGAGAGACGGACGGAGTTCTGCCTTGTTTGATTGAACACAAAAACGATCCAGATATGGACGAGAAGTGTCATGCTTCCATTGAACACTGGCAGCTGATTGAGAGGAAAGATTTCAAATTCTCTGCCGAATTTAAGAAGGCTTGTCGAAGGGATGCTCAGAAACTCTGCAGTGATGCTAAGGAGAAATTTAAGCTGGTCGAATGCCTCAGTTCCAAAATCCGCGACGCTGTGTTGAAAGAAGAGGAACACGTTGTTTCCGACCAATGTCGTCTTCAGTTGAAGGTTGCGAAGGAAGAGGAGTCTGAAGATGTTCGCCTTGACCCAGTCATATTTGACGCGTGTTCGGGCGACATAAAAAAGTATTGCAGCGATGTCAGTTTCGGACAAGCAAAGGTTCTGGAATGTCTCAAAGAGAGGAGGAAAGAGTTATCATACAATTGTAAAGAAAGTGTTCTCCAGCGAGAGGAGGAAGCGATGCAAGACCCCGAGGTGGATTACAAGCTTGAACGATCTTGTCGCAAAATGATCGTGTTATTCTGTAGCGATGTGAAGCCATCACAGATATTTTCTTGCCTCAAAAAGAACAAGAACGATCAACAAATGGAACGCAGTTGTAAAGATATCATCATCAAACGGCAGATAAGGCAATCGGAAGATGTTAGACTGAATCCGCAGATACTTAACTTCTGCGCGCTAGACCTCCCGAAATTCTGCCCAGAACCACATAAAGGCGAAGGAAAAATCATCGCTTGCCTCAAGAAACACGTAGATAACCTTTCTGACGAATGCCGGGAGTATACCGAACAGCTCATGCGCGCAGCAGCACATGACTACAGAATGGACGCCAGGCTTGTCGCAGAATGTGGAGATGAGATGAAGAGACTTTGTAAGAAAGAAGCGCCTTCCCAAGTAGAAGATTGCCTTAAAAAGAATTTAGGATCAATTCGTTCCAAAACTTGTCGTGTGGAAGTGTTTCGTCTCATGAAAGAAGGTCGCACTGATATCATGTCCGATCCGGTGTTGTATAGCGCATGCTCACTAGAGGTCCAGCGATATTGTTCGCAAATTCCATTTGGCAGAGGAAAAGTTGTGAAATGTCTCTTAGATGCTTTTAAATCAAACAGTGACAGTTTCGACCGAGAATGCCACTTTCAACTGGCGTCTCGACGAGCTATGTGGGGTCAGGCTGTCAAGGTTTTGCCTGGCGAATCACTTGGTGACCTTGCTGCCTTCGTGGTCGCTTCCCCTTCCAAGAACTATTTCTTTATTGTTTTTGCAACTGGTTTGGCACTTATTTTCGTCGGTGGCTTGGTATTTGGACGCTTGTCCAAGCGAATCAAGAGAGAGGTGAAGGATCGCTGAAACTTCTAAGGTCTTATGTTTTTTTTTCTCTCCAAAACATACCCCCATAAATAGAAACAACCACCAATCATTGTATATGTTTTTCTGCTGCTCTGCAGTATACATATTTGTTACAACTAGCGCAGTGAATGACCACTTACTCAATGTTTTAAGTTTTACTCGAGTGGAGATATTGTTTTTGCTAAACTTTGAGAGAAAACATTGCATGCGTCTTCATCGTTGCTGTTTCTCACTAAGTGGGTGTATCTGTTAAGGCTAAGCGTCAAATCCAAAATTTCCACAACACTTTTTTTGAAGGAGGAAAGACCTTACATTCGTTAATCGATGGCGCAACCTTGGGTGAAATTCCATCGGTTTACTTAACCGGATAGGTTCGGGGTTAAACCAGTTGAAAGACGACTTTTTAAGCCAAGTAATTGTCTTCTTCTTTTTTGGAAACAACTTTTCATTGGCTTCACTGCATTTTAACTCAACTGGTAAAATGTCTACTTTACAACCCACGCGTTTGGCAATAGTCTGCACTAGGTTGCGCCCATGAAAATTGATCATTCATTTGTAAGTTTATCTTAGCTGGACAGGTCTTGTTTGAAAATAGATAAGTAAATAAATAAATAAATATGGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62638	Golgi apparatus protein 1 OS=Rattus norvegicus OX=10116 GN=Glg1 PE=1 SV=1
Q61543	Golgi apparatus protein 1 OS=Mus musculus OX=10090 GN=Glg1 PE=1 SV=1
Q9Z1E9	Golgi apparatus protein 1 OS=Cricetulus griseus OX=10029 GN=GLG1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00839 all species →	Cys_rich_FGFR	Cysteine rich repeat	Family	Interproscan
PF00503 all species →	G-alpha	G-protein alpha subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001019 all species →	Family	Guanine nucleotide binding protein (G-protein), alpha subunit	Interproscan
IPR017873 all species →	Repeat	Cysteine-rich Golgi apparatus protein 1 repeat, eukaryote	Interproscan
IPR011025 all species →	Homologous_superfamily	G protein alpha subunit, helical insertion	Interproscan
IPR001893 all species →	Repeat	Cysteine-rich Golgi apparatus protein 1 repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000367 all species →	Family	G-protein alpha subunit, group S	Interproscan
IPR039728 all species →	Family	Golgi apparatus protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11884 all species →	SELECTIN LIGAND RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0019001 all species →	Molecular Function	guanyl nucleotide binding	Interproscan
GO:0031683 all species →	Molecular Function	G-protein beta/gamma-subunit complex binding	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06816	GLG1, ESL1; golgi apparatus protein 1	-	Cell adhesion molecules	ko04514	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.