Gene detail

Detailed information of amic_s0232.g10.t1 in Acropora microphthalma

Genomic Location: sc0000232_pilon:151126...164595
NR annotation: XP_029204964.2, LOW QUALITY PROTEIN: calcium-transporting ATPase type 2C member 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0232.g10.t1

TTGACAATCAAATGTTTCTGAGTATGTTCTGGTCTTCCGAGTCACGTAATGAATAAGTATAAATAGTTTTCAGAAGCAGTAGCATTTGACAAAGAATTTTCAGCTGAGATGTTTGCTTGTATATCTACATGTGGAAATTCCGTGATGTAGGAGGTTTTCTGCGAATATTTCCATGGAATATGCTGAATATGTCACGGAATACCCAGCTCGTGGCTGACAGAAAACAAGGAGACTAGATTTCAGGATAGCTCTGAGGAGTTCAAAGACACTTCAATGATGTCCACTGTGATTTCCTCGGGGAAGGCATCCTCGCTTTCCGTTGTCGAATTGTTAAAGCAGTTCAGGAGTGATCCTGTTCATGGTTTGACAAATGATGAAGTTGAGAGAAGGCGCAAACTTCATGGTTTGAATGAGTTTGACGTTGTCGAGGATATGCCTCTCTGGAGAAAGTATATCGAACAGTTCAAAGAGCCCATGATAGTGTTACTACTTGCTTCTGGTTTGGTTAGTGTATGTATGGGCCAGTATGATGATGCTGTAAGCATAACAGTGGCAATCTTGATTGTTGTAACTGTGGCTTTCATTCAGGAATATCGTTCAGATAAGTCTGTGGAAGCTATAAAGAAACTTGTCCCTCCTGGCTGCCACTGTATGCGTGAAGGGAAAGTGTCGGACTTCTTAGCTCGTGATCTGGTGCCAGGAGATCTTGTTATCATATCTGTGGGAGATAGGGTTCCAGCAGATTTAAGGCTCATTGAGGCTGTAGATTTAAAAATTGATGAATCAAGTTTTACTGGTGAGACAGAGCCAGCAAGTAAAATGATTGAGGTTGTTCCTCCTTTAAAGACAAGTGGTGGCATCTCACAAAGGAAAAATATTGCTTTTATGGGGACTTTAGTACGCTGCGGCCGTGGCAAGGGAATTGTCACTGGTGTTGGTGAGAATTCAGAATTTGGAGAAGTTTTCAAAATGATGAAAGCAGAGGAACCTCCCAAGACACCTTTACAGAAGAGCATGGACATTTTAGGAAAACAGTTATCTTTTTATTCTCTTTGTATTATAGGTCTTATTATTCTTTTTGGGTGGCTCCAGAAGCGACCTGTTTTGCAAATGTTTACCATTGGAGTCAGTTTGGCTGTGGCAGCCATCCCTGAGGGCCTTCCCATAGTAGTTACAGTCACTTTAGCTTTGGGTGTAATGAGAATGGCCCGACGAAATGCTATTGTAAAGAAGTTACCAATTGTAGAGACCCTTGGGTGTGCTAGTGTGATCTGCTCAGATAAAACTGGGACACTTACCAAGAATGAGATGACAGCGACACAGATATTCACTGCTGACGGATGCTTTGCTGAGGTTTCGGGAGTTGGCTATACTGGCTCAGGGCAAGTGTCCATAGATGGTTGTGCATTGACAACAAACTGTAATTTGTCCATTACAAAAACACTGGAGGCCGGTTATTTGTGTAACAATGCTCACATTGAAGATGGATCACTTTTTGGTCAGCCAACTGAAGGAGCTCTCGTTGCTGCGGCTCAAAAGCTGGGTATTGATGATCCAAGAAGATTATACACGCGCACTGAGGAAATTTCTTTTAGCTCAGAAAAAAAGTGGATGGCCGTCAAGTACAGAAAACAGGACGCTATGGAGATGTACTATATGAAGGGTGCACCTGAGAGGGTGTTACAGCAGTGCACTTCATATTACAAACAAGGCTTCAATGTTCCTATTGGTGCAAAAGACGGGGAACTGTTTGCTGACGCCGTAGCAGCCATGTCGTCCAGAGGGTTGAGAGTTTTAGCACTTGCTGAGGGCCAAGACTTGCAGCAGCTGACTTTCCTGGGCATGGTAGGTTTGTTAGACCCGCCGCGACCAGGAGTGCGTGACGCAGTGTCTACCTTATTGGATAGTGGTGTTCAAGTAAAGATGTTAACTGGAGATGCAAAAGAAACCGCTCTTACCATTGCCGAAATTCTGGGTCTTCACACCAAAGGACGTTTAGCTTTGTCAGGAGAAGAGTTAGAAACATTGGATAGCTTCCAGTTAGGAGATGCTGTGGACCAGGCATCAGTATTTTACCGGGTTAGTCCAAGACACAAGGTTGCCATTGTAAAGGCTCTACAGCAGCGTAATCACGTGGTAGCTATGACCGGCGATGGTGTCAATGACGCGGTGGCCTTGCGCCGAGCCGATATAGGCGTGGCAATGGGACGCGCCGGAACTGATGTGAGCAAGGAGGCTTCTGATATGGTGTTGGTCAACGACGATTTTTCCACTATCCTGGCTGCCATTGAAGAGGGCAAAGGAATATTTTATAACATACGGAACTTTGTCCGATTCCAATTAAGCACGAGTATTGCAGCCATTTCACTCATCACTATCTCGACCTTTCTCAAGCTTCCCAATCCGCTCAACGCCATGCAGATTTTATGGATAAATATCATCATGGACGGGCCTCCCGCCCAAAGCCTGGGCGTTGAACCCGTGGACCGTGACGTCATGAACAAACCTCCGCGAAATGTGAAAAATCCCATGATAACCCGGGCACTCATTCTGAACGTGCTGATATCTGCGACCATCATAGTCACGGGAACATTGTGGGTCTTCTGGAGGGAGATGAGAGACAATATGATCACACCACGTGATACCACCATGACGTTCACGTGTTTTGTGTTCTTTGACATGTTTAACGCCCTCAGTTGTCGCTCACAGGTGAAATCCATCCATCAAGTAGGTTTCTTCACAAACCGCATGTTCCTGTACGCTGTTGGCGCCTCTTTGATGGGACAGATGTTGGTCATTTACTTTCCACCTCTTCAAGCTGTCTTTCAGACCGAACCTTTGGATTGGACTGATATTTTATTGTTAATATGCGTCTCCTCTTCTGTTTTGTTCGTCGATGAAGTCAGAAAGTTGGTAATACGGATTCGTTCGAGGCGAAATCAGCACCAAAAGGACTTCAATTTTCTTGTATGACGAACAGGCATTGGCGGTAACTGCCGCAGATTTGGATCCAGTGGAATCTAGAAATATGTGGAGACTTTTTGTGGTCTTCTGGGGACAATTTATAGTTTAATTTTCAAAAAAAGGAAATCGTGCTTATCATCTACAAGATGTAAATTTTATGAGTCTTTCAAAGTTACTTGATGGAAGAAAATACTACTATTGTATGGTGACGGATATCGGCTAAAGATACATTTATAATTCAGATTCCGCAAAAAAATTGTGCGACATTTGACAATTTTCGAGATTCGACGAAGAAAATTTCCCATTCCAACAGAAATGACCTGGAAATATCACGGATTCTTTGTTGAACACTGAGAGAGTAGACAATTCAATTTTCTTCTAACGTCTGTGTATGCCAATTGAGGCTTGTTTTGACACAAACAGAAGAAAAATTGGGTTCATTGTTGTCAAGCATTTTTGGCACCAATTAAAGAAAAAATTGGGGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P98194	Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens OX=9606 GN=ATP2C1 PE=1 SV=3
Q5R5K5	Calcium-transporting ATPase type 2C member 1 OS=Pongo abelii OX=9601 GN=ATP2C1 PE=2 SV=1
Q64566	Calcium-transporting ATPase type 2C member 1 OS=Rattus norvegicus OX=10116 GN=Atp2c1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001630 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00689 all species →	Cation_ATPase_C	Cation transporting ATPase, C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006068 all species →	Domain	Cation-transporting P-type ATPase, C-terminal	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42861 all species →	CALCIUM-TRANSPORTING ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005388 all species →	Molecular Function	P-type calcium transporter activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006828 all species →	Biological Process	manganese ion transport	Interproscan
GO:0006874 all species →	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0015662 all species →	Molecular Function	P-type ion transporter activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0232.g10.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.