Gene detail

Detailed information of amic_s0232.g16.t1 in Acropora microphthalma

Genomic Location: sc0000232_pilon:221856...228595
NR annotation: XP_029204939.2, protein NLRC5-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0232.g16.t1

ATGGACCCTTATCGGCTCAAATTGTTATCCCTCTCTAACGAGCTAACAAACCAAGAACTTGTGGAGTTGAAGTTTATTTGCAAGCAACACATCCCCGTGGGAGTTTTGGAGAGAATCAAAAGACCATTAGAGCTGTTTGACGAACTAGAGAATAGAAACTTGTTGGCATCAGATAACAAGGAATTTCTGGCCGCATTATTGGCTGGGATAAATCGTTTGGAGCTCAGAGATGATTTACTTGGCAAGACAAGCGAGGAAAGCAACTCATCACCGCAAATTATATTCCAACAATCTTTGTGTGATTTTTACAAAGACGTAATTGGATGGATACAGCCCCTTGCATGGAACAAATCATTTTTGATTCACATTCAGCATATTTATACCAACTTGCAAATGATAACAAAAACCCAAAAAGGAATAACCACAAACAGAGAGCCTTTGGATTCCTATGTTGATATTTTTAAGCCTCATCCTGGCTCATCAAAGTTGAAGCGCATCCTTGTTGAAGGGCAAGCAGGGGTGGGAAAGAGCACACTTGCCTCCCTCATTGTGCATGACTGGGCTTGCAGAAATCCAAACCTGCAACACTTTAAACTTGTCCTGTTTATGGAGGTTAAGCAAATGACAGGAGACTTAAAGAGTGACATTTTTGGCTTGCTTTTTCCAAGAGATTTTAATTATTCTGCCGAACAACTTTTCCAATTTATCATAGCAAACCAAGATAGTGTTCTCCTTATTCTTGACGGCTATGATGAAGTGAAACCCTCACAGTTAGGAGATGTGGAAGACCTAATCACAGGCAAGATTTTGAGAAATGCAACTGTGCTTGTGACGTCAAGACCAGATAAAGGTTCCAGGGTTCACTGGTTTATGGATTCCCGCATTGAAATAACTGGATTTACAAATGAGAATATTCGTGAATTTGTTCTCAAGTACTTCCAAGATGATTTGCCCAAGGCAGATAGCTTAATTGCACAACTTGAACTTCACCCTGTTGCAGAACACATAGCCAAGATTCCATTAACTGCCATGCTTATTTGTGCAATGTGGGAAGAAATGCCTGATACTGCATTGCTCAGTTCTGTAACATCCCTTTTTATTGAACTTACCTTATTGCTTGTGAAACAGTACTATGCGAGACAGCCTGAGAGCAGTTTTGATCCTGCAAACCTCTGTTCTTTGAACGACATCCCAGATGATCTCTTTCAAAGTCTTCTTTCACTGGGGCAGATTTCATTGGATGGATTGTTGAAAGATCAGCTTCTCTTTGATATGTATAAGCTTGAAATGGTGTGTGCTTCAAACAGAGGTGCCCTTGATCTAGGATTCCTGTCAAAGGAATCAGGAGCATCTAGATTAAAGCCTGTGCCGAAGTGTCGTTTTTCACACAGGTCTTACCAGGAATTTCTTGCTGCTCTTTGGTTGAGCCACAAAATTAAAGCCGCTTTCTCAAATTCTTCGGTTTTTGATGATGTCAGTGTTTATATTATGAATTGCTTATCGTCTGAATTGATCTCTGTTCTTTTTCTCTTTACCCCTGGACTGCTTGGGGATGCATTTCAACCTTTCTTTGAGCTTCTGTTGCAGGAAGGAAGTGAAGAGGTTGAAGGTGATGCGAGTTTGAAGCAATCCTTTTTTGAAGTTTGTGTTCTTTCCTTATATGAATCGCGCCAGGGGCACTTAGCTTACGAAGTTGAACTCCAAATGCCTGGTGGTGTTGTTGAGCTTCATCATTTTAATGCAACACCTTACAAACTCAGGGCTCTTGTGTACTTTTTGTCCAACTGCCAATCAGTGAGGTCCTTGGTTCTGGACGAAAGTCAAGTAAACAAGGAATCTCTTGTAGTTCTTGCTAGATTTCTTCCAGAAATGGTGTCTCTCAAAGAATTACACTTGAAGCTTACCATGATAACTGATCCAAGTTTGGCTGAATTTGCAATCTCACTTTCTTCTGTAACTCAGCTGGAAACACTTGACCTTTCACACAACATGATCACCAAACATGGCTTGGCTTCCCTGATGTCTTCATTCAAGGAGCTTTCGAACTTGCAAATCTTGGCTATCCAAGGGAACAGGATATCTGATGGAGGTTTCAAGGCTTTAGCATTAGCATTACCACTCTTGCCTTGTCTGGAAGAATTGTCTCTTGGAGGCCCTGTTACGTGTACTGCTGCTGAAGGTGAAACTCAGTCTGATCAAAAGAACAACAGCCCCAATCTTATCATACCATTGTCTGAGATGACGTTCAATTTGCTGATGGAGGCAGCTGTCGCTCATGGCACTCTTAAAGTAATCAGTCTCCATCCAGATGCTGTGCCTGTGGGAAAAGATCCAGCTGAGTTTAATCATCTCAAGCTGCTGAAAGAATAA

Transcript

amic_s0232.g16.t1

CAAGAAGACTGAAACACGAAAAAGACTGAAACATGTACATTCATCTGTGTCCGGATCTCACGACTCTTGCGATGGTTCATATTTGACGTAAACGACAGAACCTGAAGAGAATATGGACCCTTATCGGCTCAAATTGTTATCCCTCTCTAACGAGCTAACAAACCAAGAACTTGTGGAGTTGAAGTTTATTTGCAAGCAACACATCCCCGTGGGAGTTTTGGAGAGAATCAAAAGACCATTAGAGCTGTTTGACGAACTAGAGAATAGAAACTTGTTGGCATCAGATAACAAGGAATTTCTGGCCGCATTATTGGCTGGGATAAATCGTTTGGAGCTCAGAGATGATTTACTTGGCAAGACAAGCGAGGAAAGCAACTCATCACCGCAAATTATATTCCAACAATCTTTGTGTGATTTTTACAAAGACGTAATTGGATGGATACAGCCCCTTGCATGGAACAAATCATTTTTGATTCACATTCAGCATATTTATACCAACTTGCAAATGATAACAAAAACCCAAAAAGGAATAACCACAAACAGAGAGCCTTTGGATTCCTATGTTGATATTTTTAAGCCTCATCCTGGCTCATCAAAGTTGAAGCGCATCCTTGTTGAAGGGCAAGCAGGGGTGGGAAAGAGCACACTTGCCTCCCTCATTGTGCATGACTGGGCTTGCAGAAATCCAAACCTGCAACACTTTAAACTTGTCCTGTTTATGGAGGTTAAGCAAATGACAGGAGACTTAAAGAGTGACATTTTTGGCTTGCTTTTTCCAAGAGATTTTAATTATTCTGCCGAACAACTTTTCCAATTTATCATAGCAAACCAAGATAGTGTTCTCCTTATTCTTGACGGCTATGATGAAGTGAAACCCTCACAGTTAGGAGATGTGGAAGACCTAATCACAGGCAAGATTTTGAGAAATGCAACTGTGCTTGTGACGTCAAGACCAGATAAAGGTTCCAGGGTTCACTGGTTTATGGATTCCCGCATTGAAATAACTGGATTTACAAATGAGAATATTCGTGAATTTGTTCTCAAGTACTTCCAAGATGATTTGCCCAAGGCAGATAGCTTAATTGCACAACTTGAACTTCACCCTGTTGCAGAACACATAGCCAAGATTCCATTAACTGCCATGCTTATTTGTGCAATGTGGGAAGAAATGCCTGATACTGCATTGCTCAGTTCTGTAACATCCCTTTTTATTGAACTTACCTTATTGCTTGTGAAACAGTACTATGCGAGACAGCCTGAGAGCAGTTTTGATCCTGCAAACCTCTGTTCTTTGAACGACATCCCAGATGATCTCTTTCAAAGTCTTCTTTCACTGGGGCAGATTTCATTGGATGGATTGTTGAAAGATCAGCTTCTCTTTGATATGTATAAGCTTGAAATGGTGTGTGCTTCAAACAGAGGTGCCCTTGATCTAGGATTCCTGTCAAAGGAATCAGGAGCATCTAGATTAAAGCCTGTGCCGAAGTGTCGTTTTTCACACAGGTCTTACCAGGAATTTCTTGCTGCTCTTTGGTTGAGCCACAAAATTAAAGCCGCTTTCTCAAATTCTTCGGTTTTTGATGATGTCAGTGTTTATATTATGAATTGCTTATCGTCTGAATTGATCTCTGTTCTTTTTCTCTTTACCCCTGGACTGCTTGGGGATGCATTTCAACCTTTCTTTGAGCTTCTGTTGCAGGAAGGAAGTGAAGAGGTTGAAGGTGATGCGAGTTTGAAGCAATCCTTTTTTGAAGTTTGTGTTCTTTCCTTATATGAATCGCGCCAGGGGCACTTAGCTTACGAAGTTGAACTCCAAATGCCTGGTGGTGTTGTTGAGCTTCATCATTTTAATGCAACACCTTACAAACTCAGGGCTCTTGTGTACTTTTTGTCCAACTGCCAATCAGTGAGGTCCTTGGTTCTGGACGAAAGTCAAGTAAACAAGGAATCTCTTGTAGTTCTTGCTAGATTTCTTCCAGAAATGGTGTCTCTCAAAGAATTACACTTGAAGCTTACCATGATAACTGATCCAAGTTTGGCTGAATTTGCAATCTCACTTTCTTCTGTAACTCAGCTGGAAACACTTGACCTTTCACACAACATGATCACCAAACATGGCTTGGCTTCCCTGATGTCTTCATTCAAGGAGCTTTCGAACTTGCAAATCTTGGCTATCCAAGGGAACAGGATATCTGATGGAGGTTTCAAGGCTTTAGCATTAGCATTACCACTCTTGCCTTGTCTGGAAGAATTGTCTCTTGGAGGCCCTGTTACGTGTACTGCTGCTGAAGGTGAAACTCAGTCTGATCAAAAGAACAACAGCCCCAATCTTATCATACCATTGTCTGAGATGACGTTCAATTTGCTGATGGAGGCAGCTGTCGCTCATGGCACTCTTAAAGTAATCAGTCTCCATCCAGATGCTGTGCCTGTGGGAAAAGATCCAGCTGAGTTTAATCATCTCAAGCTGCTGAAAGAATAATGATGTAGTACAATCTATAAAAGAAGTACAAGTGTGTGAATGGGTTCATCAAATATtcagccaaatgctcactttttttgacaatctgtcagccacggcattatcagccaaagaaccagccacctggagcagtttttttaATTTAATATTTAAATTTCAATGCTCAAGTAATTTGGTCCGTACACTACACTTGATATTTGGTGTTCGTGGTACAAACCCATATTGTTGTATTTTTGGCTCTGATCATGGGTACTTTCTATCCAACCAAACCAAGTTTAGAAAATGTCAGTTTAAGATAGAATGGGACCCTCCAGAAAAGATCAGAGAAGTTTTTTTTGAAAATATTATTTCGCAATGTGTTTCAGCGGACCAATGTTCAGGAAATCAGAACAACAAGAAAATTCTGTACCTTTGGTTCAGTTTTATTCAGACCCAGGTTGGTCTACCATAATTATTTAATTAGATCATTTATAGAGTCAACCAGTTGGAGATAGTCTCAATGCAATTATTGTGTCAATCAATCAATCATTTATTTTAACACGTTACCTCAAAGAGCTATAAAACTCGTTCAAAATATGAACTTGTGTTTACACTTACTCTCAAGTGTCTTGCATATCGTGCATACGCAGACTTGACTACAAGGCTTGATCCATATTGCAGTATCAAAATTTGTATTGAAGTCATTGAGAATTATGAAACTTAATGAAGAAATTGGACAACAAACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2LKV2	NACHT, LRR and PYD domains-containing protein 1b allele 4 OS=Mus musculus OX=10090 GN=Nlrp1b PE=2 SV=1
Q2LKV5	NACHT, LRR and PYD domains-containing protein 1b allele 3 OS=Mus musculus OX=10090 GN=Nlrp1b PE=1 SV=1
Q2LKW6	NACHT, LRR and PYD domains-containing protein 1b allele 1 OS=Mus musculus OX=10090 GN=Nlrp1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000067 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01335 all species →	DED	Death effector domain	Domain	Interproscan
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR001875 all species →	Domain	Death effector domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46312 all species →	NACHT DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0232.g16.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.