Detailed information of amic_s0232.g22.t2 in Acropora microphthalma

Genomic Location: sc0000232_pilon:256876...308528
NR annotation: XP_044165591.1, uncharacterized protein LOC114968877 isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O88738Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Mus musculus OX=10090 GN=Birc6 PE=1 SV=2
Q9NR09Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Homo sapiens OX=9606 GN=BIRC6 PE=1 SV=3
Q11076Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans OX=6239 GN=ubc-17 PE=3 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009035 (this species only)
Ubiquitin familyE2|UBC|UBC · all ubiquitin genes in this species
Ubiquitin familyUBD|UBC-like|UBC · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00179
all species →
UQ_conUbiquitin-conjugating enzymeDomainInterproscan
PF10408
all species →
Ufd2P_coreUbiquitin elongating factor coreFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016135
all species →
Homologous_superfamilyUbiquitin-conjugating enzyme/RWD-likeInterproscan
IPR000608
all species →
DomainUbiquitin-conjugating enzyme E2Interproscan
IPR045132
all species →
FamilyUbiquitin conjugation factor E4Interproscan
IPR018247
all species →
Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR019474
all species →
DomainUbiquitin conjugation factor E4, coreInterproscan
IPR002048
all species →
DomainEF-hand domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13931
all species →
UBIQUITINATION FACTOR E4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000151
all species →
Cellular Componentubiquitin ligase complexInterproscan
GO:0000209
all species →
Biological Processprotein polyubiquitinationInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0030433
all species →
Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0034450
all species →
Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0036503
all species →
Biological ProcessERAD pathwayInterproscan
GO:0006511
all species →
Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567
all species →
Biological Processprotein ubiquitinationInterproscan
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0232.g22.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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