Gene detail

Detailed information of amic_s0232.g31.t2 in Acropora microphthalma

Genomic Location: sc0000232_pilon:439513...453495
NR annotation: XP_044175561.1, uracil-DNA glycosylase-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0232.g31.t2

ATGGATCTCCATCAGAGACATCATTTGTATAACTGGATGATTCGCTCAACTGTTTTGATCGCTTTCTTCTCCTTCTTTTTTGGCAGAGATGCAGAATTGCTATTTGCTTCACAAACTAATCTTACTAGCAATCACTTAGGGAAAACAAATGCCATTCAGTTGGAAAGAATTGCATCGCAAAGCAACTTCCTGGCTCCCTTGGGGAATTCCTCGCCAAAAGCAAGTGCCCCGACTCCATTGGGGGACCGTCCTTTTCCAACCAATGTCCTTGCTCAGTGGAGAAACTTCTCACCAACCAATAACTCTCGCCAAAGGGTGAAAGACTTGGTGAGAGAAACAAATGTAACTCGCTTGGAAAATTTGGCTAGTATGGAAATCGACAACCGTTGTGACTCATTATCGTACAAAAGAGGCAAAGATGATGAGGGAGCAACCCTTGAGGAGTTCGTCTACAAGCACAACTGCGTTTCACCTGAATGGGAGCAGTTCTTTTACAATCCAGGGGTTAAAGAGGAAATCGAAAAAATATCGCGCCAAATTGAAGAGGACATTGAGACAAAAGAAGTTCAACCTTCTCTGAACAATGTGTTTCGAGCCTTTGAAGTCTTGCCTGCCAACTTGAAAGTCATCATCCTTGGCCAAGATCCAACACCACAACCAGGCAAAGCTACTGGCTTGGCGTTCAGTCTCTTCGCCGATGAAAACCCTAGAAATGTTCCCAGTGTGCTTAATATGCTTGTAGAATTGAAATTGGAAGGCTTTCAAGTGGATCTGTCAAACGGAGACCTTACTCCGTGGACAAACCAGGGAGTTATGCTTTTGAACTCGGCTCTGACAGTCCGACTGGATGCCAAAAGTCCGGCAGGTTCTCACGTTAGCTTGTGGAAAAAATTCGCAGAATATTTTCTGAACTATGTAGACAGAATGAGCCAACCAATAGCTTTCATATTATGGGGAGAAAAGGCAAAAGCCGCCTGCAAAAAAATGACTAAAGATCCAGCTAAGCGTTATTGCAGAGAAGGAAGTCATCCCTCTTCCCGCACTGGAGGAAGGAATACTTTCTTTGGTGGCAACTATTTTAAGTGTGTCAACGATTTTCTTGCTTTCACCAAACAAAATCAAATTGACTGGTCACTCGCACCAAGGATGCTGTTACCTTCGCGAACCAACGTCAGTCAATTGGGGAATGACGTTTCACTAACCAACCCCAGGGCGCATGCACCATTGTTGGGGCACGCTACTCCAAATGACTCTCACTTGCTGGAAAATTTTGCTGTAGGTATGGAAATTGACAACGTTTGTGACACAATGACATTTAAAAAGAGCAAAACCGACAAAGGGGCGACCATTGAGGAGTTTATCTACACATACAACTGTGTTCCCGAATGGAAAACGGAATTCTTTGAAAAAGAAGGAATCCGAAAGATTGTGGCTGAGTTGTCTTCGAAGATCAAAGAGGAAGTCCAAGCAAATGAGATTCAACCGCCTTTGTATGATGTGTTTAAGGCCTTTACGGTGCCGCCAAACAATGTAAAAGTCATTATTGTTGGTCAAGATCCAACACCACAACCAGGCAAAGCAACTGGCATGGCGTTCAGTCTCTCCCCAGACGAAGATCCCCGAAATGTGCCCAGTGTTCTTAACATGCTTGTAGAATTGAAATTGGAAGGTTTTGAAGTGAGTCTGTCAAACGGAGACCTTACTCCGTGGGTAAATGAGGGAGTGCTGCTTTTAAACACAGCCCTAACGCTCCGGCTTGGTGAAAATGCGACGGGCTCTCATCTCCGTATTTGGAAGCCATTCACGGATAAACTTGTCGAGCATATGTCGAACAGAAACGGCCACCCGGTAGCTTGGATATTATGGGGAGTGCAGGCTAAAACCTCCTGCAAAAACGTCAACAAAAATAGAAATTTTTGTAAAGAGGGAGGCCACCCATCTCCCCGTGGCGCTTCGATGAGTGCTTTCTTTGGCGGCAACTATTTCACAGAGGTGAACGAGTTTCTAACCAAGGCAGGACAAGGTAAAATCAACTGGACACTTGCTCATCCTGATGGGGCTGGTCCGGATATGTTGCCATGTCAACTGGATGAGGGCGTTTCAAGTCAAGGTGGAACGCCGATGGAAGGTGTAGAGCAAGCCGCAGGTTCCTTCATTTTGCCACGGATTAAGACAGTGACGTTACACTGGCTTAATTATCTTGTAAAAATTATACTTTTAACAAATTGCTGGGGAGACAAGAAGAAATATGTCTTAAAGGCTTCGGTGGTCAACTGGATAGAAACAATGGTGGAGGCAAAAATCTGTCAGTTGCAAATATTGATATCCTCTACGGTTTTCCTCTTGTTCCTTCCTCAAAGGACAGAAAGCAGGCCCATTGTGTCCCCATTTTATAAACCGCCTCCAGGACAGGAGTATGAGAAAATCAACGCCGTGAAAGATCATACTTATGAGGAATTTTATGGAAAAGGAAAGAAGAACAAGATAATCCACATCTCAAAGAACTCTTTCTGGTCGCCCGGCATGAAATTAACACGTGAAGCTTTATTGAAGGCAACATCGGCCCAGACCACTGCGCTTGTGGCTGCTGCGGAGGCTGCGCGCTCTTCCTTGGAGATCTCGGAACTAGCTCAAAAGGCCCAGGACATCTCGGTGAAAAGAGCACTTTGGGCACTGAAGACCATCAAGGTGGCTGCAAAAGCAGAGGAAGTAGCAGTGAATGCCATACAAACCATGTTCATCTAA

Transcript

amic_s0232.g31.t2

TTGCTGAATTGGCTGACACTGCCACATGCACAAGCGAAAGAGGTTAATAGAAATAAATGGTCGTTAATGACTTTTGAAAAACTCTAAGACTACAATTGGCACCGGCATTTCATGTATTCTCATTATATTCCTCTGCTGTAAGCCACAAGTTCAGTCATTTCGTTTCCAGCCTATTTATGGATCTCCATCAGAGACATCATTTGTATAACTGGATGATTCGCTCAACTGTTTTGATCGCTTTCTTCTCCTTCTTTTTTGGCAGAGATGCAGAATTGCTATTTGCTTCACAAACTAATCTTACTAGCAATCACTTAGGGAAAACAAATGCCATTCAGTTGGAAAGAATTGCATCGCAAAGCAACTTCCTGGCTCCCTTGGGGAATTCCTCGCCAAAAGCAAGTGCCCCGACTCCATTGGGGGACCGTCCTTTTCCAACCAATGTCCTTGCTCAGTGGAGAAACTTCTCACCAACCAATAACTCTCGCCAAAGGGTGAAAGACTTGGTGAGAGAAACAAATGTAACTCGCTTGGAAAATTTGGCTAGTATGGAAATCGACAACCGTTGTGACTCATTATCGTACAAAAGAGGCAAAGATGATGAGGGAGCAACCCTTGAGGAGTTCGTCTACAAGCACAACTGCGTTTCACCTGAATGGGAGCAGTTCTTTTACAATCCAGGGGTTAAAGAGGAAATCGAAAAAATATCGCGCCAAATTGAAGAGGACATTGAGACAAAAGAAGTTCAACCTTCTCTGAACAATGTGTTTCGAGCCTTTGAAGTCTTGCCTGCCAACTTGAAAGTCATCATCCTTGGCCAAGATCCAACACCACAACCAGGCAAAGCTACTGGCTTGGCGTTCAGTCTCTTCGCCGATGAAAACCCTAGAAATGTTCCCAGTGTGCTTAATATGCTTGTAGAATTGAAATTGGAAGGCTTTCAAGTGGATCTGTCAAACGGAGACCTTACTCCGTGGACAAACCAGGGAGTTATGCTTTTGAACTCGGCTCTGACAGTCCGACTGGATGCCAAAAGTCCGGCAGGTTCTCACGTTAGCTTGTGGAAAAAATTCGCAGAATATTTTCTGAACTATGTAGACAGAATGAGCCAACCAATAGCTTTCATATTATGGGGAGAAAAGGCAAAAGCCGCCTGCAAAAAAATGACTAAAGATCCAGCTAAGCGTTATTGCAGAGAAGGAAGTCATCCCTCTTCCCGCACTGGAGGAAGGAATACTTTCTTTGGTGGCAACTATTTTAAGTGTGTCAACGATTTTCTTGCTTTCACCAAACAAAATCAAATTGACTGGTCACTCGCACCAAGGATGCTGTTACCTTCGCGAACCAACGTCAGTCAATTGGGGAATGACGTTTCACTAACCAACCCCAGGGCGCATGCACCATTGTTGGGGCACGCTACTCCAAATGACTCTCACTTGCTGGAAAATTTTGCTGTAGGTATGGAAATTGACAACGTTTGTGACACAATGACATTTAAAAAGAGCAAAACCGACAAAGGGGCGACCATTGAGGAGTTTATCTACACATACAACTGTGTTCCCGAATGGAAAACGGAATTCTTTGAAAAAGAAGGAATCCGAAAGATTGTGGCTGAGTTGTCTTCGAAGATCAAAGAGGAAGTCCAAGCAAATGAGATTCAACCGCCTTTGTATGATGTGTTTAAGGCCTTTACGGTGCCGCCAAACAATGTAAAAGTCATTATTGTTGGTCAAGATCCAACACCACAACCAGGCAAAGCAACTGGCATGGCGTTCAGTCTCTCCCCAGACGAAGATCCCCGAAATGTGCCCAGTGTTCTTAACATGCTTGTAGAATTGAAATTGGAAGGTTTTGAAGTGAGTCTGTCAAACGGAGACCTTACTCCGTGGGTAAATGAGGGAGTGCTGCTTTTAAACACAGCCCTAACGCTCCGGCTTGGTGAAAATGCGACGGGCTCTCATCTCCGTATTTGGAAGCCATTCACGGATAAACTTGTCGAGCATATGTCGAACAGAAACGGCCACCCGGTAGCTTGGATATTATGGGGAGTGCAGGCTAAAACCTCCTGCAAAAACGTCAACAAAAATAGAAATTTTTGTAAAGAGGGAGGCCACCCATCTCCCCGTGGCGCTTCGATGAGTGCTTTCTTTGGCGGCAACTATTTCACAGAGGTGAACGAGTTTCTAACCAAGGCAGGACAAGGTAAAATCAACTGGACACTTGCTCATCCTGATGGGGCTGGTCCGGATATGTTGCCATGTCAACTGGATGAGGGCGTTTCAAGTCAAGGTGGAACGCCGATGGAAGGTGTAGAGCAAGCCGCAGGTTCCTTCATTTTGCCACGGATTAAGACAGTGACGTTACACTGGCTTAATTATCTTGTAAAAATTATACTTTTAACAAATTGCTGGGGAGACAAGAAGAAATATGTCTTAAAGGCTTCGGTGGTCAACTGGATAGAAACAATGGTGGAGGCAAAAATCTGTCAGTTGCAAATATTGATATCCTCTACGGTTTTCCTCTTGTTCCTTCCTCAAAGGACAGAAAGCAGGCCCATTGTGTCCCCATTTTATAAACCGCCTCCAGGACAGGAGTATGAGAAAATCAACGCCGTGAAAGATCATACTTATGAGGAATTTTATGGAAAAGGAAAGAAGAACAAGATAATCCACATCTCAAAGAACTCTTTCTGGTCGCCCGGCATGAAATTAACACGTGAAGCTTTATTGAAGGCAACATCGGCCCAGACCACTGCGCTTGTGGCTGCTGCGGAGGCTGCGCGCTCTTCCTTGGAGATCTCGGAACTAGCTCAAAAGGCCCAGGACATCTCGGTGAAAAGAGCACTTTGGGCACTGAAGACCATCAAGGTGGCTGCAAAAGCAGAGGAAGTAGCAGTGAATGCCATACAAACCATGTTCATCTAACTGCTTGCAAACGTCAGATCCCTGTTCTAATTCATGTACATATTTAAATAGGCAGTAAATATCATTGAAAAAATATTTATTTGCCCAGTGTTGTCCGAGTTGACCTCGGGGCAGTGTTAAGGTCAGAGGAAATCCTGAAATGTGTGCAATCAGTGTCCGAATGTGATCAGTTTGCTTGGAAAGGAGTCAAAGCTCGGCGTTTAGAAAACTGCGGCAGTACTAGTTTGATATGAGGAATGAGCTAGAAATGATGCATTGAGCTAATTTTTTAAATGAACATTTTCAAGAGCGTATAATAATAAATTTTCTTTTTATTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CIX2	Uracil-DNA glycosylase OS=Lactococcus lactis subsp. lactis (strain IL1403) OX=272623 GN=ung PE=3 SV=1
A2RHW2	Uracil-DNA glycosylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=ung PE=3 SV=1
Q032L5	Uracil-DNA glycosylase OS=Lactococcus lactis subsp. cremoris (strain SK11) OX=272622 GN=ung PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001192 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03167 all species →	UDG	Uracil DNA glycosylase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005122 all species →	Domain	Uracil-DNA glycosylase-like	Interproscan
IPR002043 all species →	Family	Uracil-DNA glycosylase family 1	Interproscan
IPR036895 all species →	Homologous_superfamily	Uracil-DNA glycosylase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11264 all species →	URACIL-DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004844 all species →	Molecular Function	uracil DNA N-glycosylase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0097510 all species →	Biological Process	base-excision repair, AP site formation via deaminated base removal	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0232.g31.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.