Gene detail

Detailed information of amic_s0233.g6.t1 in Acropora microphthalma

Genomic Location: sc0000233_pilon:89906...95314
NR annotation: XP_015760531.1, PREDICTED: SPRY domain-containing SOCS box protein 1-like isoform X2 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0233.g6.t1

ATCCAGGGATTCACTTGCACGACATTGTGGTGGTCATGAACACAAATTGCCTGGTTACTCGTTCGAAAAACATCTAACAAAGGGCATTCATCGTTCGCATGTAAAGGGCTCTCCAAGGACAATCTCAGCTCTGTACCAAAAATGGGATCAAGAATTTCGGCCGTGAAAAGGAACGATCACAATGACAATAGGCAAGGAGTTTACAAGTCACTTAATATCTCTCCTGAAGAAGATCGAGCAAGAGATCTAGCGAGACCAGAGAAATTAGACATTTTATTTGATCGGCCTTCTCTACCGGAAGAGGCTTTGTTAGGACATGCTTGGAATCCAAACGATAGATCAGTGAACATTTTCGTGAAAGAAGACGATCCACATACATTCCATAGGCATCCTGTCGCTCAGAGTACGGATTGCATTCGAGGGAAAAAAGGATATAGTCGCGGATTTCACGTCTGGGAGATACAATGGTCGACACGGCAGCGTGGGACACACGCCGTGGTGGGGGTAGCCACATCAAAGGCAGTTCTTCATTGCACAGGATACCAATCGTTAGTCGGCAGTAACGAAGAAAGCTGGGGTTGGGACATTGTTAGAAACAAGCTTTACCATAATGAAAAGAACATTTCTGCCGTAAAATATCCAATGTTGTCTGACAATGATCACAGCTTTGTGGTACCTGACAAGTTTCGCGTAATATTGGATATGGATGAAGGTACTATGGCTTTTGAAACGAACGATGGACGTTATCTTGGAGTCGCTTTTCGTGGAATTAAAGGAAAGACTGTATTTCCAATAGTATCTGCCGTGTGGGGTCATTGTGAAATCACCATGAAATACATTGGTGGACTTGATCCTGAACCACAGCCACTAATGGACCTTTGTCGTCGCACCATACGCAAATCCATTGGTAAGGACCAGCTGACAAAAGGCAACGTGGATAAGCTGCCAATCCCTGTGCCAATGAAGAAATACCTTTTGTACCAACAAGGATGGTGACTGCAAGCTCTTCAAACATTGAATGATAATGGTTGCTGTATATGTCTATTAATTTAATATGAATAGCAAAACAATAATTTATTATGACAATATATATTACCTGGTAAAAAGGATGAATTCCATTTGTGAAGCCATAGTATTCAGAGATCTGTCCAACCATCCACTAACACTACAAAGGTAGTTAAAGGGCAGTCTTTTGTATTCCTAGGCTCTATAAGTCATTTCAGTTCAATTTATTAAAAAAGCAACTTAAAGAACTCTACATTCAGATATTTAGGAGTCTTACAATAATGTTTGTACTTAATGATTGATCTTGAGCATTTCATATGAGCCACATTGGCTTGTGAAACCTCGTGAAATGCTACTTTGAGAGGCATGATTGTTTTAATGTAGAAATTTTATGTCTTGTGTAGACATTTTTCTTTTCGTTTTGGGGAGAGAATTTTAAGACATTTTATTGTAGTCATTAACTTATTGCAGGTTTCTAATATTTCATTATATATAATTTATATTTGCATTAAGATAATATAATTTGGCTTGCATATTTTATGGTTTTAGTTGCTAAGGAATCAAAGTGAATTATATTAGGTTCAGAATGAGGAATTTGTGTGGTGAAGAGTCATAAATATTTCAACACTTTATTAGTGATTTGACTTGTACAGAAAGACAGAGGCATTTCAAACTAGCTTTAATGCACTTGAGTTTCTTTGGATCTCTACTAggccccagttcatcctaggttggatagtgctatccattggataagtaccacctaaagctactgagatttcagtgggcagtagtttatctggtgaaaagagctatatatccaccctttgaacaactgagaccaTGTTAGGTTTTGAGGTTTGTGTTCTATAGTCATGGAATGTATGATGATTATTGTAAATAGCAATCTGACATGTTTTGTTTAAGTATTCAGAAAATTTATTTATTGTTGAAGATGACCTCCTGGCATTGCATTTTTGTTAACAATATTTTAACTTCGTTCTCATTCTTAAGAATGAAAATTAATTGCAAAAACTTCAGTGTCATATTTATTAAAATTAAAGGTCACCCATGTGACTCTCAAAGTATTCATTTCCCAGATATGAAATTTTTGTCCCTAGGCAAATGTGTTCAAAATGATACAGTAGTACCCATTCTGACCTCTTTTGTTGATTTTGAATTGGTTTTAAGTAAGATGTATGGGAGGGTGAAGTTTGAGCTCGAGAGAAGAGTTTTACATTGATAAGtatatatatatatatatatatatatatatatatatacattgataagtatatatatatatatgtatatTGATTGGGTACTATTGCCCTGCAAAATCATGATATTACAGCAGGGGAAACATTTTTTTTTGTTTAGGAAAATACATGGGAGAATTACTTCAGTAATATTAATACTTTTTTGTGTGCAAATTGAATGTGAATTATTTATTTATTTCACTACAAGAGGAATTGATTATTACATATTTATTACAAATGAACTTTTAGGATGTGTTTTACCAGGTTATGGTCTCAACATTAAAATGTCAAGTTGGGAAGTTGTTAATTTACTTTTCAACTGATTTGAATAGTGATGGATAAACGGTTACATGATATATTGAATTCTACCAGAGCAAGAGTCAAGGGGAAGTGAACACGGTTTCTTTACTACCCTAATGCCTTAATTTGCTGAAGTACAAATATTGACAAGAATCATCCAATACCTTGCTCAATACATAGAAGTTCAATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1Z6E0	Protein gustavus OS=Drosophila melanogaster OX=7227 GN=gus PE=1 SV=2
Q9D5L7	SPRY domain-containing SOCS box protein 1 OS=Mus musculus OX=10090 GN=Spsb1 PE=1 SV=1
Q5E9X6	SPRY domain-containing SOCS box protein 1 OS=Bos taurus OX=9913 GN=SPSB1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007491 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|SOCS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan
PF07525 all species →	SOCS_box	SOCS box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR036036 all species →	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR050672 all species →	Family	F-box/SPRY and SOCS box protein families	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12245 all species →	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10343	SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.