Gene detail

Detailed information of amic_s0235.g7.t1 in Acropora microphthalma

Genomic Location: sc0000235_pilon:148406...170074
NR annotation: XP_029208768.2, translation factor GUF1 homolog, mitochondrial-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0235.g7.t1

ATGCAATTTTTAAATAAAACAGGAATTGGCGTATCGGCTGTTTTTTCTAAATCGCCAGAATCTTACATACGCTCTCTGGTTGGTTTGTGCAAGAGAACAGACAAATTCATTGCTGCAGAGTTAACGGAATGCATGCATTTAAGAAGAACTCGTTGCTATAAACTCTTGGAAAAGGGAAGCAACTGCAAATCCAAGCACAACTTTTGGAGGGCATGCAGTCAATCGACTCGCCCAGGAATGTCCAAAAAGGAGAAAATTAACATGTCAGATTTTCCAGTGTCAAGGATAAAGAACTTCAGTATCATTGCTCACATTGATCATGGCAAAAGCACACTCGCTGACAGACTGCTTGAAATGACAGGAACAATATCAAGAAACACTGACAACAAGCAAGTCCTAGATAAACTTCAAGTTGAAAGGGAAAGAGGGATAACAGTCAAGGCCCAAACAGCATCACTCTTTTATCAGTACAAAGGGGAAACTTATTTGTTAAATCTTATTGATACACCAGGACATGTTGACTTTAGCTATGAAGTTTCAAGGTCCCTAGCAGCCTGTCAAGGTGTCATTCTTATGGTTGATGCAGCACAGGGTGTCCAGGCTCAGACAGTGTCCAATTTTTTCTTGGCTTTTGATAAGGATTTGCACATTATACCAGTACTCAACAAGATTGATTTAAAGAGTGCTGATCCTGATGGTGTTTCAAAGCAAATGGAGAAGCTATTTGATATAAAACAAGAAGAGATTTTAAAGATATCGGCAAAAACAGGTAGTGGGGTTGATAGTATCCTGGAAACTGCCATTCAGCAGCTGCCATGCCCTCAGGGTGACCCAAATGCTCCCCTGCGAGCCTTGCTATTTGATTCCTGGTATGACCACTACAGAGGTGTAATCTGTCTTGCTGCTGTTCTGGATGGATCACTGACAAAAGGAGATGAAATAATGTCAGCATATTCTAAACAGAGATATGAAGTTCAGGATGTGGGAATTATGTATCCAGGAGAAGTATCGACTGGGGCTCTATATGCTGGTCAAGTCGGTTTTGTCTCCTGTGGGATAAGGAACAGTAAAGATGCTCAAATAGGGGACACATTTTTCCATCCTCACTCACCAGTAGAAGCCCTGTCAGGATTTAAGCCCATTAAACCAACGGTCTTTGCAGGTATTTACCCTGTGGATCAGACAGAACACATCTATTTGCGATCTGCCATTGAAAAACTCACTCTGAATGATGCCAGTGTTACTATACACGCTGATAGCTGTTTAGCACTTGGTCAAGGCTGGCGGCTTGGCTTCCTTGGTTTGCTTCACATGGATGTTTTCAAGCAGAGATTAGAGCAGGAATACAACGCAAAAGTGATTGTAACTTCGCCGAATGTTCCTTACAAGGCAATTTTAGCTGACAAAGAAGGGAAAGAAATTGAAGTGCTTAATCCTTTGGAACTTCCAGATCCCTCGTTGGTGAAGTTCTATATGGAGCCCTTTGTCATGGGAACAATAGTTTTCCCTGAGGAATGCATGGGGAAGATGCTCACTCTTTGTGAGAGCAGGCGCGGTGAGCAACAGGAAGTGTTGTATATAGATGAGTCGCGTGTTATGATCAAATACTTGTTACCACTGAGCGAAATCATCGTGGATTTCTATGACGAGCTCAAGTCGCAGTCCTCAGGTTATGCGAGCTTTGATTATGAAGACGAAGGCTACCGAGAGACAAACATAGTCAGGATGGATATTTTAATCAACGGGACGGTGGTTGATGCGTTAAGCTGCATTGTTCATACAGACAAAGCGGTGCAATCTGGGAGGTCACTTTGCGCCAAGCTCAAAAATGTTATTCCAAAGCAACTTTTTGAGGTGGTGATTCAAGCCTCTATTCGAGGAAGAATTACAGCAAGGGAAACGATAAGAGCCCTGAGAAAGGACGTCACAGCAAAATGTTACGGTGGTGACGTAACTAGAAAAATGAAGCTACTTCAGAAGCAGAAAGAAGGGAAAAAACGAATGAAGCGAATAGGAAAAGTGGACGTTCCCCATGAAGCATTTCTGGCAATTCTGAAAAGATGA

Transcript

amic_s0235.g7.t1

GGACAATATTTAAAGGAAATTAATGATGGTACTTTCTTCGCTGTTTTACAGATTCAGATGGAAAAGAAAAACGAGGAAGAGTAGTTACTGCAATGGTATTAGAGTATAGCTATGCAATTTTTAAATAAAACAGGAATTGGCGTATCGGCTGTTTTTTCTAAATCGCCAGAATCTTACATACGCTCTCTGGTTGGTTTGTGCAAGAGAACAGACAAATTCATTGCTGCAGAGTTAACGGAATGCATGCATTTAAGAAGAACTCGTTGCTATAAACTCTTGGAAAAGGGAAGCAACTGCAAATCCAAGCACAACTTTTGGAGGGCATGCAGTCAATCGACTCGCCCAGGAATGTCCAAAAAGGAGAAAATTAACATGTCAGATTTTCCAGTGTCAAGGATAAAGAACTTCAGTATCATTGCTCACATTGATCATGGCAAAAGCACACTCGCTGACAGACTGCTTGAAATGACAGGAACAATATCAAGAAACACTGACAACAAGCAAGTCCTAGATAAACTTCAAGTTGAAAGGGAAAGAGGGATAACAGTCAAGGCCCAAACAGCATCACTCTTTTATCAGTACAAAGGGGAAACTTATTTGTTAAATCTTATTGATACACCAGGACATGTTGACTTTAGCTATGAAGTTTCAAGGTCCCTAGCAGCCTGTCAAGGTGTCATTCTTATGGTTGATGCAGCACAGGGTGTCCAGGCTCAGACAGTGTCCAATTTTTTCTTGGCTTTTGATAAGGATTTGCACATTATACCAGTACTCAACAAGATTGATTTAAAGAGTGCTGATCCTGATGGTGTTTCAAAGCAAATGGAGAAGCTATTTGATATAAAACAAGAAGAGATTTTAAAGATATCGGCAAAAACAGGTAGTGGGGTTGATAGTATCCTGGAAACTGCCATTCAGCAGCTGCCATGCCCTCAGGGTGACCCAAATGCTCCCCTGCGAGCCTTGCTATTTGATTCCTGGTATGACCACTACAGAGGTGTAATCTGTCTTGCTGCTGTTCTGGATGGATCACTGACAAAAGGAGATGAAATAATGTCAGCATATTCTAAACAGAGATATGAAGTTCAGGATGTGGGAATTATGTATCCAGGAGAAGTATCGACTGGGGCTCTATATGCTGGTCAAGTCGGTTTTGTCTCCTGTGGGATAAGGAACAGTAAAGATGCTCAAATAGGGGACACATTTTTCCATCCTCACTCACCAGTAGAAGCCCTGTCAGGATTTAAGCCCATTAAACCAACGGTCTTTGCAGGTATTTACCCTGTGGATCAGACAGAACACATCTATTTGCGATCTGCCATTGAAAAACTCACTCTGAATGATGCCAGTGTTACTATACACGCTGATAGCTGTTTAGCACTTGGTCAAGGCTGGCGGCTTGGCTTCCTTGGTTTGCTTCACATGGATGTTTTCAAGCAGAGATTAGAGCAGGAATACAACGCAAAAGTGATTGTAACTTCGCCGAATGTTCCTTACAAGGCAATTTTAGCTGACAAAGAAGGGAAAGAAATTGAAGTGCTTAATCCTTTGGAACTTCCAGATCCCTCGTTGGTGAAGTTCTATATGGAGCCCTTTGTCATGGGAACAATAGTTTTCCCTGAGGAATGCATGGGGAAGATGCTCACTCTTTGTGAGAGCAGGCGCGGTGAGCAACAGGAAGTGTTGTATATAGATGAGTCGCGTGTTATGATCAAATACTTGTTACCACTGAGCGAAATCATCGTGGATTTCTATGACGAGCTCAAGTCGCAGTCCTCAGGTTATGCGAGCTTTGATTATGAAGACGAAGGCTACCGAGAGACAAACATAGTCAGGATGGATATTTTAATCAACGGGACGGTGGTTGATGCGTTAAGCTGCATTGTTCATACAGACAAAGCGGTGCAATCTGGGAGGTCACTTTGCGCCAAGCTCAAAAATGTTATTCCAAAGCAACTTTTTGAGGTGGTGATTCAAGCCTCTATTCGAGGAAGAATTACAGCAAGGGAAACGATAAGAGCCCTGAGAAAGGACGTCACAGCAAAATGTTACGGTGGTGACGTAACTAGAAAAATGAAGCTACTTCAGAAGCAGAAAGAAGGGAAAAAACGAATGAAGCGAATAGGAAAAGTGGACGTTCCCCATGAAGCATTTCTGGCAATTCTGAAAAGATGACACGTCACAGTAAATTGAGACACAATTGCAAAACGATTCTGAAATTGCCTTGAATTCTATTTAAACTGTCAGTCTGATGACCCTTCCGTCACTCTCGGTACAAGGGAAAAATCaaggacttcccaaatacacccccctttcctaagaaaatcacacgtacacaaacattggccgcgtgcaagtgcctctttcaatgagactgcagccatttattttaatcctaggttgagaaattgcttggttgctatgattgtgatatgatcagaattacctcaggctatcagaaatgctttcgggatcttacacaaacaaacatcctttatttgtcctaaagcctttctgtacaaaaaaggtttttgtactaagacaCAGGAGTAAGGCACATTATATTGTTACTAAAATAATGTGATATCTAAGAACCCTAAGGCAAATCCAGAACTACTTTATTGGTCAACTTGTAAGTGGTGCGCTGTTTCTCGTGAAATAAGCCACCGTGATTCAAGGCACCGTAACTTAAAAACACTCCCAGTGAATTATAAACTTCTAACGGATGAACTAAGCACTATTGAGAGCCCATCAGTCAATAGTAGTTAATTCATGGTAGGCCCCCGAGCTAAATCTAAAGAACGAGCTCATAACTGTAAAATGTAACTACTAAGTTCTAACAGCTGCCCTAACTTCAATTTTCGTGGCAGTAGACCATCAGGCCACAAATCGCAAAGTTCTCTGTCAGTATCTCAGAATAAGGCAAAGAAAATTAGTAGCGTTCAACTGAAACCGTAACTCCCAAACATCAGCTCAGAGCAGCTTGTCCACTGACAGGGTTTCTCGGCTTTGTGAAGAAAATGAACAAGTGTCATGTAAATTATTGGAATTCCAGGTTGTACTCAATGGAATGGCCGTCGTGCTAGTGTGGCAAATAGCTGGATAGGTTCTTTTAATGCACATGATTGGACATGTGATTCAACAGCACTACTTACAAACGTAATAAAGATCGCAAAAGAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3RXR7	Translation factor GUF1 homolog, mitochondrial OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_56304 PE=3 SV=1
A6QLJ3	Translation factor GUF1, mitochondrial OS=Bos taurus OX=9913 GN=GUF1 PE=2 SV=1
Q8C3X4	Translation factor Guf1, mitochondrial OS=Mus musculus OX=10090 GN=Guf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002510 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF06421 all species →	LepA_C	GTP-binding protein LepA C-terminus	Family	Interproscan
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF00679 all species →	EFG_C	Elongation factor G C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035654 all species →	Domain	Elongation factor 4, domain IV	Interproscan
IPR031157 all species →	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006297 all species →	Family	Elongation factor 4	Interproscan
IPR035647 all species →	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR038363 all species →	Homologous_superfamily	LepA, C-terminal domain superfamily	Interproscan
IPR013842 all species →	Domain	GTP-binding protein LepA, C-terminal	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR000640 all species →	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43512 all species →	TRANSLATION FACTOR GUF1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0045727 all species →	Biological Process	positive regulation of translation	Interproscan
GO:0097177 all species →	Molecular Function	mitochondrial ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21594	GUF1; translation factor GUF1, mitochondrial	EC:3.6.5.-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.