Detailed information of amic_s0238.g6.t1 in Acropora microphthalma

Genomic Location: sc0000238_pilon:187837...227655
NR annotation: XP_044163992.1, transcription activator BRG1-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A7Z019SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Bos taurus OX=9913 GN=SMARCA4 PE=2 SV=1
Q8K1P7SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Rattus norvegicus OX=10116 GN=Smarca4 PE=1 SV=1
Q6DIC0SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 OS=Mus musculus OX=10090 GN=Smarca2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002797 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176
all species →
SNF2-rel_domSNF2-related domainDomainInterproscan
PF08880
all species →
QLQQLQDomainInterproscan
PF00271
all species →
Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF14619
all species →
SnACSnf2-ATP coupling, chromatin remodelling complexDomainInterproscan
PF07529
all species →
HSAHSA domainFamilyInterproscan
PF00439
all species →
BromodomainBromodomainDomainInterproscan
PF07533
all species →
BRKBRK domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000330
all species →
DomainSNF2, N-terminalInterproscan
IPR001487
all species →
DomainBromodomainInterproscan
IPR014978
all species →
DomainGlutamine-Leucine-Glutamine, QLQInterproscan
IPR029295
all species →
DomainSnf2, ATP coupling domainInterproscan
IPR006576
all species →
DomainBRK domainInterproscan
IPR038718
all species →
Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR014012
all species →
DomainHelicase/SANT-associated domainInterproscan
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650
all species →
DomainHelicase, C-terminal domain-likeInterproscan
IPR036427
all species →
Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR049730
all species →
DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR037259
all species →
Homologous_superfamilyBRK domain superfamilyInterproscan
IPR018359
all species →
Conserved_siteBromodomain, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10799
all species →
SNF2/RAD54 HELICASE FAMILYInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0140658
all species →
Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006355
all species →
Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0042393
all species →
Molecular Functionhistone bindingInterproscan
GO:0003677
all species →
Molecular FunctionDNA bindingInterproscan
GO:0008094
all species →
Molecular FunctionATP-dependent activity, acting on DNAInterproscan
GO:0008134
all species →
Molecular Functiontranscription factor bindingInterproscan
GO:0045944
all species →
Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11647SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4EC:5.6.2.-
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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