Gene detail

Detailed information of amic_s0241.g5.t1 in Acropora microphthalma

Genomic Location: sc0000241_pilon:85514...89845
NR annotation: XP_044184198.1, uncharacterized protein LOC122964576 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0241.g5.t1

ATGGATCCTAACGTTCAAGCGGAGATAGAACGACAACAGTCTCAGCTGCTAGAAAAGCTGTCCACCATCTTCGACAACAAGATAGACAGTATGAAACGGCAGTTGGAAGACGTATCGAACAAAGCACATGAGTCGCAAATGAGCGAACTAAAGCGGATGCGGTTTGCTGAACCACGGTCTTTCAAGAAAAAAGGCCACGAGCAGCAATACAAACACAACGAGAAAGTGAAAACTGCTGTGACAGAAGCCAAGGAAGCCATTTTAGCACGAAAACAAGACGCCTGCATAGCTAAGCTAGATGAAGGTATTGAATTAATCGAGGGACGTCAGAAACTTATTCTTATGGCAGACCGATCAGATTTCGGTTGGAAGACGGTCGGAGAGTACTTAGATAACGAATTAGCGGAGAACGATGAAGATGCTAAGAAGATGAAGAAAGCAGAGAAAGAAGCGCAACGGAAGATAACTGAAGCACGGGCGAGCAAGATGGCGAAGAGCCGCGCTTCATTTAGTAGACTTCCAAGGCCGGTTAGCAGAAGTAGTTCATTTCCTACTCAGTACGCTTCTCCCGGAACCAGCCACCACCACACATCTGCAACGGTTGGTGTAATGAGCGCTTCCGACTTTCGTGGCCAGGTCAGGAGAAGTGGAACGTGTTTCAGTTGCGGAAAAGTAGGACACTGGAGAAATGAATGTCCACTACTAGCCGTTGCGCAGACCCACGAAGGGAAGAAGTTAAGTATACCTAACATGAGTGTAAACAGTACAGGAGTGATATTACAGAATGATGATACCTGTAATGTTATTAGTTGCCAGCAGGGCGAGTTGGGCGGGGAGTCAGACGACTTATCTCTTAACGAAGGGGATTTTCTTGAGAACGACCCTCCTCAAGCAGATCAAGTTCGAGGGCGACTCAGAGCGCATTTGCATTCCTGGGAGGAGATAGGGGCAACGGAGCCCGTTTTAAGTATAATAAGAGAGGGTTATAAACTACCCCTGCTTACTATTCCTCAGTCTGCTTTACTGCGGAACAACAAGTCCGCTTTTGATAATTGTAGTTTTGTTTCCAAAGCAATTGCTGATCTTCTTGCCAACCAGTGCGTTGATGTTGTCGACAGCCAACCATGGGTGGTTAACCCTTTGTCTGTGTCAGTTAGGGACGATGGGAAGAAACGTTTAGTCCTGGATTTGCGCCATGTAAACCCCCACCTTTATAAATATAAGTTTAAATGCGAAGACATCGCTGTCGCACAGCAACTCCTGGGGGAGGGCTACTACCTTTATACATTTGACATTAAGAGTGCTTACCACCATGTTGATATTTTTGAAAGTCATCGAACTTATTTGGGATTCCAGTGGCAGCATCATGGCAAACCAACATTTTTTGTTTTTAACGTATTGCCATTCGGTTTGTCCACAGCCCCGTATACATTTACCAAACTTTTAAAACCAGTGGTAAGTCACTGGAGAGGTTCAGGCATCAGGGTATGCATGTTTTTGGATGATGGCTTTGGTGGCAACTCTTCATTAGAGTCTGCATCTGCGGATGCTCAGGCAGTGGAGACTTGCCTTTGTGCGTTGGGTTTCACTCTGAGCAGTAGTAAGTGCAACTGGCAGCCAGCGTTAGTTCAGACCTGGCTCGGTTATGTCTTTAATATGTCAGAGAACCGGTTGTATGTCACTCAATCCAGGGTCACTAAACTAAAAGAATCTCTTTCAACTATTTTGACCAATCCAGATAGGGTTACGGCTAAAGGTCTAGCCCAAGTCACTGGTCGTATTATCTCCATGGCAGAAGCCATTGGCTCAAGTGTCTATTTACATACTAGACACATGTATTATGCAATAGAAAGCAGAACATCCTGGAATTCAATTATCCTCTGTTCTCCAAAATTGATGGAAGAGCTTAATTTTTGGGACACAAATTTAGATGTTCTGAATGGCAAGAAGCTTTTTGATCAGCCCCAAAGTTTCGATGCCATAGTATATTCAGATGCTTCAGCGCAGGGCTATGGTGGATACGTAATTTCAGATAAAGATAAGTTAATTTGCCAGGGGCAATGGGCAAGTGATGAAAAAGCGGAGAGCTCAACTTGGCGAGAGCTCAAGGCAGTACACAACATGTTACTGTCTGTGGGCAGCACTTTGCAGGGACACAAACTACAGTGGCATACAGATAACCAGAACATCACACGAATAATCCATAGGGGAAGTATGAAAACCAATTTACAAGAAATTGTCGAGGACGTTGTCCATTTGTGCACAAAGTATCATATTGTAATCACTCCCGTTTGGGTTCCCCGAGACGAGAACCGGCTTGCTGACTATCTCAGTAAATTAACAGATGTGGATGACTGGGGAATTCAACCTCATATCTTTCAATGGGTAACAACCCTTTGGGGTCCTTTCACCATTGACCGATTTGCTTCCTGGTACAACACCAAGTGCAATCGCTTCAATTCCCGTTTCTGGAATCCGGGTTGCGAGGGTATTGACGCATTCTCTCTAAACTGGCAAGGGGAAAACAATTGGGTGGTGCCCCCACCAAGCCAAATTGTCAGGGCTTGGAAGCATTTTCAGATTTGTCAGGCACGAGGGGTATTGATCATTCCTCTTTGGAAAGGGGCAGTGTTTTGGCCTTGTGTGTGCCCTGACGGCATTCATTTGGCCAAATGTGTAACGGATTGGGTTGCTCTTCCAGAATTTAATTCGCCAGCGACGGTAAAAGGCAGGACATACAATTCCATGTTTTATGGTCAACCACTCAGTTTCAAGCTCATAGCAGTTTATGTTAATTGGCAGAATTTTCATGAGCGAAGAAGTGATCGAGGGTTTTGCTTGTCAGGCAAAGGTTTGAATCTTTTCAGCCAAGGCATTTGGGCAGAGATCCAGGAACAAGCCACATCAAGTGGGAGTGCACACCTCATACATTTAGCGGGTGTCCTTAAACGAACTACCCTGGCAGCAAAAGCCAGTGGAACTGTTGTTAATTATAGCAATTCCCTTAAGCATTGGATAGAATTTTCTAAGGATAGGAATTTAGTACCTTTCCCTGCCACTGTTGTTGATATTGCCTTGTTTTTTAGTCACTTAACTTCTATCGGAGTATCAGCTTCTGTTATAGAAACAATTTATTCTGCGCTGAAATGGGTACATGATATTGCGGGTGTGACCAATCCAATGACCAACCCATTTGTCAAAACTGTCGTCGAAGGGGCAAAACGTGCAAATGCTAAACCAGTTGTAAAGAAAACGCCCATTTCTAAAGACGTCCTCAAAGCATGTTGTGAGAAATATGCAACTTGTAACGAATTACCAATACGGAGAAATATTTCCGTTGCATTGTTGTTATTCGCGGGGTTTTTTCGGTTCAGCGAGCTTGCAGGTCTCACTCTTAAGGATATAACTATTTCTGACTCTCACTTAACTATCCAAGTTACTAGAAGCAAGACAGACCAGTACAGGAAGGGTGACGAAGTTGTGATTATTCGGTCGGACAAAGTGACTTGTCCAGTTGTAAACCTAGAAAGGTACATGTTGTTAGCAAATATCGATACTTCTAAAGCCAGTTCAGATTATCTGTTTAAACCATTAGTTAAAGTAAGGTCTGGTTTCAAACTTATTGAGAAAGTCAAGCCATTGAGCTACACTAGAGCAAGGGAGTCCGTTGTAGGGCTGCTTAAGGAGTTCGTCCCAGATACTGCCAACATTAGTTTGCATTCTTTTAGGGCAGGGGGTGCAACGGCAGCAGCCAACGCCCAGGTTCCTGATCGTTGTTGGAAGCGCCACGGTAGATGGCGGTCAGATTCGGCAAAGGATGGCTATGTTGAAGACTCTATCGATAATCGCTTACTTGTTTCTCAATCCCTAGGAATTTGA

Transcript

amic_s0241.g5.t1

TTACTGCGAGGAATTCCAAAACACCAAGGAACACTCGACAGATCTGATTTTCACGTAACATGGATCCTAACGTTCAAGCGGAGATAGAACGACAACAGTCTCAGCTGCTAGAAAAGCTGTCCACCATCTTCGACAACAAGATAGACAGTATGAAACGGCAGTTGGAAGACGTATCGAACAAAGCACATGAGTCGCAAATGAGCGAACTAAAGCGGATGCGGTTTGCTGAACCACGGTCTTTCAAGAAAAAAGGCCACGAGCAGCAATACAAACACAACGAGAAAGTGAAAACTGCTGTGACAGAAGCCAAGGAAGCCATTTTAGCACGAAAACAAGACGCCTGCATAGCTAAGCTAGATGAAGGTATTGAATTAATCGAGGGACGTCAGAAACTTATTCTTATGGCAGACCGATCAGATTTCGGTTGGAAGACGGTCGGAGAGTACTTAGATAACGAATTAGCGGAGAACGATGAAGATGCTAAGAAGATGAAGAAAGCAGAGAAAGAAGCGCAACGGAAGATAACTGAAGCACGGGCGAGCAAGATGGCGAAGAGCCGCGCTTCATTTAGTAGACTTCCAAGGCCGGTTAGCAGAAGTAGTTCATTTCCTACTCAGTACGCTTCTCCCGGAACCAGCCACCACCACACATCTGCAACGGTTGGTGTAATGAGCGCTTCCGACTTTCGTGGCCAGGTCAGGAGAAGTGGAACGTGTTTCAGTTGCGGAAAAGTAGGACACTGGAGAAATGAATGTCCACTACTAGCCGTTGCGCAGACCCACGAAGGGAAGAAGTTAAGTATACCTAACATGAGTGTAAACAGTACAGGAGTGATATTACAGAATGATGATACCTGTAATGTTATTAGTTGCCAGCAGGGCGAGTTGGGCGGGGAGTCAGACGACTTATCTCTTAACGAAGGGGATTTTCTTGAGAACGACCCTCCTCAAGCAGATCAAGTTCGAGGGCGACTCAGAGCGCATTTGCATTCCTGGGAGGAGATAGGGGCAACGGAGCCCGTTTTAAGTATAATAAGAGAGGGTTATAAACTACCCCTGCTTACTATTCCTCAGTCTGCTTTACTGCGGAACAACAAGTCCGCTTTTGATAATTGTAGTTTTGTTTCCAAAGCAATTGCTGATCTTCTTGCCAACCAGTGCGTTGATGTTGTCGACAGCCAACCATGGGTGGTTAACCCTTTGTCTGTGTCAGTTAGGGACGATGGGAAGAAACGTTTAGTCCTGGATTTGCGCCATGTAAACCCCCACCTTTATAAATATAAGTTTAAATGCGAAGACATCGCTGTCGCACAGCAACTCCTGGGGGAGGGCTACTACCTTTATACATTTGACATTAAGAGTGCTTACCACCATGTTGATATTTTTGAAAGTCATCGAACTTATTTGGGATTCCAGTGGCAGCATCATGGCAAACCAACATTTTTTGTTTTTAACGTATTGCCATTCGGTTTGTCCACAGCCCCGTATACATTTACCAAACTTTTAAAACCAGTGGTAAGTCACTGGAGAGGTTCAGGCATCAGGGTATGCATGTTTTTGGATGATGGCTTTGGTGGCAACTCTTCATTAGAGTCTGCATCTGCGGATGCTCAGGCAGTGGAGACTTGCCTTTGTGCGTTGGGTTTCACTCTGAGCAGTAGTAAGTGCAACTGGCAGCCAGCGTTAGTTCAGACCTGGCTCGGTTATGTCTTTAATATGTCAGAGAACCGGTTGTATGTCACTCAATCCAGGGTCACTAAACTAAAAGAATCTCTTTCAACTATTTTGACCAATCCAGATAGGGTTACGGCTAAAGGTCTAGCCCAAGTCACTGGTCGTATTATCTCCATGGCAGAAGCCATTGGCTCAAGTGTCTATTTACATACTAGACACATGTATTATGCAATAGAAAGCAGAACATCCTGGAATTCAATTATCCTCTGTTCTCCAAAATTGATGGAAGAGCTTAATTTTTGGGACACAAATTTAGATGTTCTGAATGGCAAGAAGCTTTTTGATCAGCCCCAAAGTTTCGATGCCATAGTATATTCAGATGCTTCAGCGCAGGGCTATGGTGGATACGTAATTTCAGATAAAGATAAGTTAATTTGCCAGGGGCAATGGGCAAGTGATGAAAAAGCGGAGAGCTCAACTTGGCGAGAGCTCAAGGCAGTACACAACATGTTACTGTCTGTGGGCAGCACTTTGCAGGGACACAAACTACAGTGGCATACAGATAACCAGAACATCACACGAATAATCCATAGGGGAAGTATGAAAACCAATTTACAAGAAATTGTCGAGGACGTTGTCCATTTGTGCACAAAGTATCATATTGTAATCACTCCCGTTTGGGTTCCCCGAGACGAGAACCGGCTTGCTGACTATCTCAGTAAATTAACAGATGTGGATGACTGGGGAATTCAACCTCATATCTTTCAATGGGTAACAACCCTTTGGGGTCCTTTCACCATTGACCGATTTGCTTCCTGGTACAACACCAAGTGCAATCGCTTCAATTCCCGTTTCTGGAATCCGGGTTGCGAGGGTATTGACGCATTCTCTCTAAACTGGCAAGGGGAAAACAATTGGGTGGTGCCCCCACCAAGCCAAATTGTCAGGGCTTGGAAGCATTTTCAGATTTGTCAGGCACGAGGGGTATTGATCATTCCTCTTTGGAAAGGGGCAGTGTTTTGGCCTTGTGTGTGCCCTGACGGCATTCATTTGGCCAAATGTGTAACGGATTGGGTTGCTCTTCCAGAATTTAATTCGCCAGCGACGGTAAAAGGCAGGACATACAATTCCATGTTTTATGGTCAACCACTCAGTTTCAAGCTCATAGCAGTTTATGTTAATTGGCAGAATTTTCATGAGCGAAGAAGTGATCGAGGGTTTTGCTTGTCAGGCAAAGGTTTGAATCTTTTCAGCCAAGGCATTTGGGCAGAGATCCAGGAACAAGCCACATCAAGTGGGAGTGCACACCTCATACATTTAGCGGGTGTCCTTAAACGAACTACCCTGGCAGCAAAAGCCAGTGGAACTGTTGTTAATTATAGCAATTCCCTTAAGCATTGGATAGAATTTTCTAAGGATAGGAATTTAGTACCTTTCCCTGCCACTGTTGTTGATATTGCCTTGTTTTTTAGTCACTTAACTTCTATCGGAGTATCAGCTTCTGTTATAGAAACAATTTATTCTGCGCTGAAATGGGTACATGATATTGCGGGTGTGACCAATCCAATGACCAACCCATTTGTCAAAACTGTCGTCGAAGGGGCAAAACGTGCAAATGCTAAACCAGTTGTAAAGAAAACGCCCATTTCTAAAGACGTCCTCAAAGCATGTTGTGAGAAATATGCAACTTGTAACGAATTACCAATACGGAGAAATATTTCCGTTGCATTGTTGTTATTCGCGGGGTTTTTTCGGTTCAGCGAGCTTGCAGGTCTCACTCTTAAGGATATAACTATTTCTGACTCTCACTTAACTATCCAAGTTACTAGAAGCAAGACAGACCAGTACAGGAAGGGTGACGAAGTTGTGATTATTCGGTCGGACAAAGTGACTTGTCCAGTTGTAAACCTAGAAAGGTACATGTTGTTAGCAAATATCGATACTTCTAAAGCCAGTTCAGATTATCTGTTTAAACCATTAGTTAAAGTAAGGTCTGGTTTCAAACTTATTGAGAAAGTCAAGCCATTGAGCTACACTAGAGCAAGGGAGTCCGTTGTAGGGCTGCTTAAGGAGTTCGTCCCAGATACTGCCAACATTAGTTTGCATTCTTTTAGGGCAGGGGGTGCAACGGCAGCAGCCAACGCCCAGGTTCCTGATCGTTGTTGGAAGCGCCACGGTAGATGGCGGTCAGATTCGGCAAAGGATGGCTATGTTGAAGACTCTATCGATAATCGCTTACTTGTTTCTCAATCCCTAGGAATTTGATTGAGTTTGTTTAATAATAAATTTACGCGTTCCCG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000157 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00589 all species →	Phage_integrase	Phage integrase family	Family	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF13456 all species →	RVT_3	Reverse transcriptase-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR010998 all species →	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR002104 all species →	Domain	Integrase, catalytic domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR002156 all species →	Domain	Ribonuclease H domain	Interproscan
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0241.g5.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.